Provider: Nature Publishing Group Content: application/x-research-info-systems TY - JOUR AU - Voigt, C. A. AU - Kauffman, S. AU - Wang, Z. G. TI - Rational evolutionary design: the theory of in vitro protein evolution JO - Adv. Protein Chem. PY - 2000/// VL - 55 SP - 79 EP - 160 M3 - 10.1016/S0065-3233(01)55003-2 N1 - 10.1016/S0065-3233(01)55003-2 UR - http://dx.doi.org/10.1016/S0065-3233(01)55003-2 ER - TY - JOUR AU - Socolich, M. TI - Evolutionary information for specifying a protein fold JO - Nature PY - /// SP - EP - ER - TY - JOUR AU - Lockless, S. W. AU - Ranganathan, R. TI - Evolutionarily conserved pathways of energetic connectivity in protein families JO - Science PY - 1999/// VL - 286 SP - 295 EP - 299 M3 - 10.1126/science.286.5438.295 N1 - 10.1126/science.286.5438.295 UR - http://dx.doi.org/10.1126/science.286.5438.295 ER - TY - JOUR AU - Suel, G. M. AU - Lockless, S. W. AU - Wall, M. A. AU - Ranganathan, R. TI - Evolutionarily conserved networks of residues mediate allosteric communication in proteins JO - Nature Struct. Biol. PY - 2003/// VL - 10 SP - 59 EP - 69 M3 - 10.1038/nsb881 N1 - 10.1038/nsb881 UR - http://dx.doi.org/10.1038/nsb881 ER - TY - JOUR AU - Bedford, M. T. AU - Sarbassova, D. AU - Xu, J. AU - Leder, P. AU - Yaffe, M. B. TI - A novel pro-Arg motif recognized by WW domains JO - J. Biol. Chem. PY - 2000/// VL - 275 SP - 10359 EP - 10369 M3 - 10.1074/jbc.275.14.10359 N1 - 10.1074/jbc.275.14.10359 UR - http://dx.doi.org/10.1074/jbc.275.14.10359 ER - TY - JOUR AU - Chen, H. I. AU - Sudol, M. TI - The WW domain of Yes-associated protein binds a proline-rich ligand that differs from the consensus established for Src homology 3-binding modules JO - Proc. Natl Acad. Sci. USA PY - 1995/// VL - 92 SP - 7819 EP - 7823 ER - TY - JOUR AU - Ermekova, K. S. TI - The WW domain of neural protein FE65 interacts with proline-rich motifs in Mena, the mammalian homolog of Drosophila enabled JO - J. Biol. Chem. PY - 1997/// VL - 272 SP - 32869 EP - 32877 M3 - 10.1074/jbc.272.52.32869 N1 - 10.1074/jbc.272.52.32869 UR - http://dx.doi.org/10.1074/jbc.272.52.32869 ER - TY - JOUR AU - Lu, P. J. AU - Zhou, X. Z. AU - Shen, M. AU - Lu, K. P. TI - Function of WW domains as phosphoserine- or phosphothreonine-binding modules JO - Science PY - 1999/// VL - 283 SP - 1325 EP - 1328 M3 - 10.1126/science.283.5406.1325 N1 - 10.1126/science.283.5406.1325 UR - http://dx.doi.org/10.1126/science.283.5406.1325 ER - TY - JOUR AU - Zarrinpar, A. AU - Lim, W. A. TI - Converging on proline: the mechanism of WW domain peptide recognition JO - Nature Struct. Biol. PY - 2000/// VL - 7 SP - 611 EP - 613 M3 - 10.1038/77891 N1 - 10.1038/77891 UR - http://dx.doi.org/10.1038/77891 ER - TY - JOUR AU - Kanelis, V. AU - Rotin, D. AU - Forman-Kay, J. D. TI - Solution structure of a Nedd4 WW domain-ENaC peptide complex JO - Nature Struct. Biol. PY - 2001/// VL - 8 SP - 407 EP - 412 M3 - 10.1038/87562 N1 - 10.1038/87562 UR - http://dx.doi.org/10.1038/87562 ER - TY - JOUR AU - Verdecia, M. A. AU - Bowman, M. E. AU - Lu, K. P. AU - Hunter, T. AU - Noel, J. P. TI - Structural basis for phosphoserine-proline recognition by group IV WW domains JO - Nature Struct. Biol. PY - 2000/// VL - 7 SP - 639 EP - 643 M3 - 10.1038/77929 N1 - 10.1038/77929 UR - http://dx.doi.org/10.1038/77929 ER - TY - JOUR AU - Kato, Y. TI - Common mechanism of ligand recognition by group II/III WW domains: redefining their functional classification JO - J. Biol. Chem. PY - 2004/// VL - 279 SP - 31833 EP - 31841 M3 - 10.1074/jbc.M404719200 N1 - 10.1074/jbc.M404719200 UR - http://dx.doi.org/10.1074/jbc.M404719200 ER - TY - JOUR AU - Hu, H. TI - A map of WW domain family interactions JO - Proteomics PY - 2004/// VL - 4 SP - 643 EP - 655 M3 - 10.1002/pmic.200300632 N1 - 10.1002/pmic.200300632 UR - http://dx.doi.org/10.1002/pmic.200300632 ER - TY - JOUR AU - Otte, L. TI - WW domain sequence activity relationships identified using ligand recognition propensities of 42 WW domains JO - Protein Sci. PY - 2003/// VL - 12 SP - 491 EP - 500 M3 - 10.1110/ps.0233203 N1 - 10.1110/ps.0233203 UR - http://dx.doi.org/10.1110/ps.0233203 ER - TY - JOUR AU - Chen, H. I. TI - Characterization of the WW domain of human yes-associated protein and its polyproline-containing ligands JO - J. Biol. Chem. PY - 1997/// VL - 272 SP - 17070 EP - 17077 M3 - 10.1074/jbc.272.27.17070 N1 - 10.1074/jbc.272.27.17070 UR - http://dx.doi.org/10.1074/jbc.272.27.17070 ER - TY - JOUR AU - Espanel, X. AU - Sudol, M. TI - A single point mutation in a group I WW domain shifts its specificity to that of group II WW domains JO - J. Biol. Chem. PY - 1999/// VL - 274 SP - 17284 EP - 17289 M3 - 10.1074/jbc.274.24.17284 N1 - 10.1074/jbc.274.24.17284 UR - http://dx.doi.org/10.1074/jbc.274.24.17284 ER - TY - JOUR AU - Kasanov, J. AU - Pirozzi, G. AU - Uveges, A. J. AU - Kay, B. K. TI - Characterizing Class I WW domains defines key specificity determinants and generates mutant domains with novel specificities JO - Chem. Biol. PY - 2001/// VL - 8 SP - 231 EP - 241 M3 - 10.1016/S1074-5521(01)00005-9 N1 - 10.1016/S1074-5521(01)00005-9 UR - http://dx.doi.org/10.1016/S1074-5521(01)00005-9 ER - TY - JOUR AU - Toepert, F. AU - Pires, J. R. AU - Landgraf, C. AU - Oschkinat, H. AU - Schneider-Mergener, J. TI - Synthesis of an array comprising 837 variants of the hYAP WW protein domain JO - Angew. Chem. Int. Edn Engl. PY - 2001/// VL - 40 SP - 897 EP - 900 M3 - 10.1002/1521-3773(20010302)40:5<897::AID-ANIE897>3.3.CO;2-O N1 - 10.1002/1521-3773(20010302)40:5<897::AID-ANIE897>3.3.CO;2-O UR - http://dx.doi.org/10.1002/1521-3773(20010302)40:5<897::AID-ANIE897>3.3.CO;2-O ER - TY - JOUR AU - Huang, X. TI - Structure of a WW domain containing fragment of dystrophin in complex with [beta]-dystroglycan JO - Nature Struct. Biol. PY - 2000/// VL - 7 SP - 634 EP - 638 M3 - 10.1038/77923 N1 - 10.1038/77923 UR - http://dx.doi.org/10.1038/77923 ER - TY - JOUR AU - Carter, P. J. AU - Winter, G. AU - Wilkinson, A. J. AU - Fersht, A. R. TI - The use of double mutants to detect structural changes in the active site of the tyrosyl-tRNA synthetase (Bacillus stearothermophilus) JO - Cell PY - 1984/// VL - 38 SP - 835 EP - 840 M3 - 10.1016/0092-8674(84)90278-2 N1 - 10.1016/0092-8674(84)90278-2 UR - http://dx.doi.org/10.1016/0092-8674(84)90278-2 ER - TY - JOUR AU - Hidalgo, P. AU - MacKinnon, R. TI - Revealing the architecture of a K+ channel pore through mutant cycles with a peptide inhibitor JO - Science PY - 1995/// VL - 268 SP - 307 EP - 310 ER - TY - JOUR AU - Dahiyat, B. I. AU - Mayo, S. L. TI - De novo protein design: fully automated sequence selection JO - Science PY - 1997/// VL - 278 SP - 82 EP - 87 M3 - 10.1126/science.278.5335.82 N1 - 10.1126/science.278.5335.82 UR - http://dx.doi.org/10.1126/science.278.5335.82 ER - TY - JOUR AU - Dwyer, M. A. AU - Looger, L. L. AU - Hellinga, H. W. TI - Computational design of a biologically active enzyme JO - Science PY - 2004/// VL - 304 SP - 1967 EP - 1971 M3 - 10.1126/science.1098432 N1 - 10.1126/science.1098432 UR - http://dx.doi.org/10.1126/science.1098432 ER - TY - JOUR AU - Kortemme, T. TI - Computational redesign of protein-protein interaction specificity JO - Nature Struct. Mol. Biol. PY - 2004/// VL - 11 SP - 371 EP - 379 M3 - 10.1038/nsmb749 N1 - 10.1038/nsmb749 UR - http://dx.doi.org/10.1038/nsmb749 ER - TY - JOUR AU - Kraemer-Pecore, C. M. AU - Lecomte, J. T. AU - Desjarlais, J. R. TI - A de novo redesign of the WW domain JO - Protein Sci. PY - 2003/// VL - 12 SP - 2194 EP - 2205 M3 - 10.1110/ps.03190903 N1 - 10.1110/ps.03190903 UR - http://dx.doi.org/10.1110/ps.03190903 ER - TY - JOUR AU - Harbury, P. B. AU - Plecs, J. J. AU - Tidor, B. AU - Alber, T. AU - Kim, P. S. TI - High-resolution protein design with backbone freedom JO - Science PY - 1998/// VL - 282 SP - 1462 EP - 1467 M3 - 10.1126/science.282.5393.1462 N1 - 10.1126/science.282.5393.1462 UR - http://dx.doi.org/10.1126/science.282.5393.1462 ER - TY - JOUR AU - Kuhlman, B. TI - Design of a novel globular protein fold with atomic-level accuracy JO - Science PY - 2003/// VL - 302 SP - 1364 EP - 1368 M3 - 10.1126/science.1089427 N1 - 10.1126/science.1089427 UR - http://dx.doi.org/10.1126/science.1089427 ER - TY - JOUR AU - Thompson, J. D. AU - Higgins, D. G. AU - Gibson, T. J. TI - CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice JO - Nucleic Acids Res. PY - 1994/// VL - 22 SP - 4673 EP - 4680 ER - TY - JOUR AU - Ferguson, N. AU - Johnson, C. M. AU - Macias, M. AU - Oschkinat, H. AU - Fersht, A. TI - Ultrafast folding of WW domains without structured aromatic clusters in the denatured state JO - Proc. Natl Acad. Sci. USA PY - 2001/// VL - 98 SP - 13002 EP - 13007 M3 - 10.1073/pnas.221467198 N1 - 10.1073/pnas.221467198 UR - http://dx.doi.org/10.1073/pnas.221467198 ER - TY - GEN PY - /// ER -