Supplementary information
From the following article:
A genome-wide comparison of recent chimpanzee and human segmental duplications
Ze Cheng, Mario Ventura, Xinwei She, Philipp Khaitovich, Tina Graves, Kazutoyo Osoegawa, Deanna Church, Pieter DeJong, Richard K. Wilson, Svante Pääbo, Mariano Rocchi & Evan E. Eichler
Nature 437, 88-93(1 September 2005)
doi:10.1038/nature04000
Supplementary Methods
Additional description of the methods used in this study.
Supplementary Figure Legends
Text to accompany the below Supplementary Figures.
Supplementary Figures
This file contains Supplementary Figures S1-S6, S8.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome 1. (See chimpparalogy.gs.washington.edu)
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome 2.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome 3.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome 4.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome 5.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome 6.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome 7.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome 8.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome 9.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome 10.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome 11.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome 12.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome 13.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome 14.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome 15.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome 16.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome 17.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome 18.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome 19.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome 20.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome 21.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome 22.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, chromosome X.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, Chimpanzee Sequence Y.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, Chimpanzee Sequence, PTR Chr22.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, Chimpanzee Sequence, PTR Specific Sequence.
Supplementary Figure S7
Chromosome views of chimpanzee and human segmental duplications, Chimpanzee Sequence, Unaligned PTR Sequence.
Supplementary Table S1
Comparison of human and chimpanzee WSSD duplications
Supplementary Table S2
WSSD duplications and triallelic variants
Supplementary Table S3
FISH results for shared (CH) duplications
Supplementary Table S4
Chimpanzee-human array CGH vs. chimpanzee WSSD duplications
Supplementary Table S5
cDNA/ESTs with copy number verification from Fortna, A. et al.
Supplementary Table S6
Duplication statistics and duplication shadowing simulation results
Supplementary Table S7
Human specific gene duplications
Supplementary Table S8
Chimpanzee specific gene duplications
Supplementary Table S9
Genes differentially expressed and specifically duplicated in human or chimpanzee
Supplementary Table S10
Differentially expressed genes between human and chimpanzee vs. duplication regions
Supplementary Table S11
FISH results with chimpanzee-only duplications.
Supplementary Table S12
FISH results with chimpanzee-only duplications.
Supplementary Table S13
Human and chimpanzee single nucleotide variation in unique regions and duplication/unique transition regions.
Supplementary Table S14
Sequence identity of shared vs. human-only duplications
Supplementary Table S15
Regions where human copy # exceeds chimp copy# by >5
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