Figures and Tables

From the following article:

Initial sequence of the chimpanzee genome and comparison with the human genome

The Chimpanzee Sequencing and Analysis Consortium

Nature 437, 69-87(1 September 2005)

doi:10.1038/nature04072

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Figure 1

Human-chimpanzee divergence in 1-Mb segments across the genome.

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Figure 2

Regional variation in divergence rates.

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Figure 3

Divergence rates versus G + C content for 1-Mb segments across the autosomes.

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Figure 4

Disproportionately elevated divergence and G + C content near hominid telomeres.

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Figure 5

Length distribution of small indel events, as determined using bounded sequence gaps.

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Figure 6

Length distribution of large indel events (> 15 kb), as determined using paired-end sequences from chimpanzee mapped against the human genome.

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Figure 7

Correlation of Alu age and distribution by G + C content.

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Figure 8

Dependency of homologous recombination between Alu elements on divergence and distance.

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Figure 9

Human–chimpanzee–mouse–rat tree with branch-specific KA/KS (omega) values.

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Figure 10

Purifying selection on synonymous sites.

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Figure 11

Hominid and murid KA/KS (omega) in GO categories with more than 20 analysed genes.

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Figure 12

Human and chimpanzee KA/KS (omega) in GO categories with more than 20 analysed genes.

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Figure 13

The observed fraction of ancestral alleles in 1% bins of observed frequency.

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Table 1

Chimpanzee assembly statistics

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Table 2

Transposable element activity in human and chimpanzee lineages

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Table 3

Comparison of KA/KS for divergence and human diversity

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Table 4

Rapidly diverging gene clusters in human and chimpanzee

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Table 5

GO categories with the highest divergence rates in hominids

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Table 6

GO categories with accelerated divergence rates in hominids relative to murids

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Table 7

Candidate human disease variants found in chimpanzee

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Table 8

Human regions with strongest signal of selection based on diversity relative to divergence

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