TABLE 1
From the following article:
Initial sequence of the chimpanzee genome and comparison with the human genome
The Chimpanzee Sequencing and Analysis Consortium
Nature 437, 69-87(1 September 2005)
doi:10.1038/nature04072
Table 1. Chimpanzee assembly statistics.
| Assembler | PCAP | ARACHNE |
|---|---|---|
*Contigs >1 kb. | ||
†N50 length is the size x such that 50% of the assembly is in units of length at least x. | ||
| Major contigs* | 400,289 | 361,782 |
| Contig length (kb; N50)† | 13.3 | 15.7 |
| Supercontigs | 67,734 | 37,846 |
| Supercontig length (Mb; N50) | 2.3 | 8.6 |
| Sequence redundancy: all bases (Q20) | 5.0  (3.6 ) | 4.3 (3.6 ) |
| Physical redundancy | 20.7 | 19.8 |
| Consensus bases (Gb) | 2.7 | 2.7 |