Supplementary information

From the following article:

The map-based sequence of the rice genome

International Rice Genome Sequencing Project

Nature 436, 793-800(11 August 2005)

doi:10.1038/nature03895

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Supplementary Notes

Contains Supplementary Methods, Supplementary Results and Supplementary Figure Legends.

Supplementary Tables

Supplementary Tables S1–S21, excluding Supplementary Tables S17 and S18.

Supplementary Table 17

Locations of SSRs relative to genetic markers

Supplementary Table 18

Information on all SSRs

Supplementary Figure S1.

Rice gene models that align with cereal EST sequences. This data may be biased by the depth of species-specific cDNA libraries and does not reflect evolutionary distances.

Supplementary Figure S2.

The density of expressed genes on the twelve rice chromosomes.

Supplementary Figure S3a.

Functional classification of predicted proteins and protein domains. a, Biological process (proteins).

Supplementary Figure S3b.

Functional classification of predicted proteins and protein domains b, Molecular function (domains).

Supplementary Figure S4.

Comparison of the predicted rice proteome with other model species.

Supplementary Figure S5.

Distribution of Tos17insertions on the twelve rice chromosomes.

Supplementary Figure S6.

Array sizes of tandemly repeated genes.

Supplementary Figure S7.

The density of tRNA genes on the twelve rice chromosomes.

Supplementary Figure S8.

Distribution of organellar inserts on the Nipponbare pseudomolecules.

Supplementary Figure S9.

Frequency of the ten most frequent SSR motif families in the rice genome.

Supplementary Figure S10.

Comparison of the 93-11 and Syngenta assemblies with a portion of IRGSP chromosome 1S.

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