Comparative Gene Catalog Human Chromosome 21 / Chimpanzee chromosome 22

by The International Chimpanzee chromosome 22 consortium
LEGEND
Human Gene symbol Aliases Gene Description Human Gene Category Human cDNA Accession No. cDNA sequence extracted from HSA21 seq/gene structure/aa seq DNA Strand on HSA21 seq Human Gene Position1 on HSA21 seq Human Gene Position2 on HSA21 seq Human gene Size (bp) Chimp Gene symbol Chimp Gene Category cDNA sequence extracted from PTR22 seq/gene structure/aa seq Chimp Gene Position1 on PTR22 seq Chimp Gene Position2 on PTR22 seq Chimp gene Size (bp) DNA Strand on PTR22 seq EST2GENOME alignment cDNA/chimp genomic clone(s) Mouse ortholog cDNA/Peptide Alignments Protein length in human/chimp %identity cDNA (nt) %identity ORF (nt) %identity ORF (aa) Protein motifs Changed splice sites (human/chimp) Peptide 3-way Alignment (human/chimp/mouse) Peptide multiple-way Alignment (all species) Structural protein changes
TPTE   tensin, putative protein-tyrosine phosphatase, EC 3.1.3.48. 1 AF007118 Available data - 7669047 7753226 84180 TPTE             sequencing gap Tpte
AJ311311 		              3-way alignment multiple-way alignment  
CYC1LP4   cytochrome c pseudogene 4     - 7698271 7698625 355 CYC1LP4             sequencing gap                      
MLL3P Pseudo1 putative zinc finger protein pseudogene 4     - 7760531 7801797 41267 MLL3P             sequencing gap                      
Pseudo1.1   pseudogene similar to cDNA DKFZp586E1423 4     - 7866295 7924547 58253 Pseudo1.1             sequencing gap                      
TTLL1P Pseudo2 tubulin tyrosine ligase-like 1 pseudogene 4     - 7876388 7876648 261 TTLL1P             sequencing gap                      
PRED1   putative gene, protein kinase C ETA type (EC 2.7.1.) like 3   Available data + 7910043 7910115 73 PRED1             sequencing gap                      
VN1R7P ORLP1 pheromone receptor pseudogene 4     - 7914933 7916675 1743 VN1R7P             sequencing gap                      
EIF3S5P   eucaryotic initiation factor-3, subunit 5 pseudogene 4     - 7942640 7943688 1049 EIF3S5P             sequencing gap                      
Centromere                                                        
C21orf99   chromosome 21 open reading frame 99 (C21orf99), mRNA 1 NM_153773 Available data + 11076976 11086203 9228 C21orf99             sequencing gap                      
ZNF355P PRED65 pseudogene with similarity to zinc finger proteins 4     - 11130506 11132296 1791 ZNF355P             sequencing gap                      
FGF7L PRED3 homolog to a Homo sapiens mRNA, proto-oncogene protein precursor like (S81661) 3   Available data + 11383451 11385008 1558 FGF7L             sequencing gap                      
C21orf110 PRED4 putative gene with similarities to KIAA1074 and KIAA0565; 2 spliced EST BQ429618 Available data - 11420593 11433588 12996 C21orf110             sequencing gap                      
GTF2IP2   pseudogene for general transcription factor 2-I (GTF2I) mRNA 4     - 11477547 11523374 45828 GTF2IP2             sequencing gap                      
VN1R8P ORLP2 pheromone receptor pseudogene 4     + 11510590 11512237 1648 VN1R8P             sequencing gap                      
SNX19P   pseudogene for D87443 4     + 11559304 11564203 4900 SNX19P             sequencing gap                      
OR4K12P GU27_RAT_9 olfactory receptor, family 4, subfamily K, member 12 pseudogene 4     - 11615270 11616197 928 OR4K12P 4 Available data 13680319 13681246 928 - PTB-520F08_RIKEN                      
ANKRD21 POTE Expressed in prostate, ovary, testis, and placenta (POTE), mRNA 1 NM_174981 Available data + 11644369 11675777 31409 ANKRD21 1 Available data 13708968 13740019 31052 + PTB-056N14_RIKEN PTB-520F08_RIKEN   2-way alignments NM_174981 (584 aa/584 aa) 98 98 96 Protein motifs        
CXADRP CXAR_HUMAN_958 coxsackie virus and adenovirus receptor pseudogene 4     + 11710161 11712606 2446 CXADRP 4 Available data 13776311 13778760 2450 + PTB-056N14_RIKEN                      
FEM1DP   pseudogene for IR2179379 4     + 11797921 11800235 2315 FEM1DP 4 Available data 13862641 13864970 2330 + PTB-056N14_RIKEN, PTB-084L06_RIKEN                      
TERF1P   pseudogene for AF003001 4     + 11810278 11812804 2527 TERF1P 4 Available data 13875005 13877551 2547 + PTB-056N14_RIKEN, PTB-084L06_RIKEN                      
CNN2 CNN2P calponin P pseudogene 4     + 11860862 11863017 2156 CNN2 4 Available data 13925599 13927760 2162 + PTB-084L06_RIKEN                      
ZNF114P1 CF2_DROME_12 pseudogene for Q8NC26 4     + 11872922 11873987 1066 ZNF114P1 4 Available data 13937676 13938739 1064 + PTB-084L06_RIKEN                      
CYP4F3LP   cytochrome P450 pseudogene 4     - 11877321 11882844 5524 CYP4F3LP 4 Available data 13942100 13947627 5528 - PTB-084L06_RIKEN                      
C21orf15   Homo sapiens C21orf15 protein (C21orf15) mRNA, partial cds 1 AY040090 Available data - 11877334 11882556 5223 C21orf15 1 Available data 13942113 13947339 5227 - PTB-084L06_RIKEN   2-way alignments AY040090 (110 aa/110 aa) 98 99 98 Protein motifs gtgag..accag/gcgag..accag      
D21S2082   pseudogene for melanoma antigen mRNA 4     + 11942451 11944627 2177 D21S2082 4 Available data 14025871 14028040 2170 + PTB-080D12_RIKEN                      
C21orf81   chromosome 21 open reading frame 81 (C21orf81), mRNA 1 NM_153750 Available data - 11977956 12014636 36681 C21orf81 4 Available data 14073333 14074092 760 - PTB-080D12_RIKEN     NM_153750 (89 aa/- aa)                
NF1L1 NF1L1P neurofibromatosis type 1 pseudogene 4     + 12033352 12041033 7682 NF1L1 4 Available data 14093902 14101582 7681 + PTB-080D12_RIKEN                      
D21S2083   pseudogene for AK002063 4     + 12041237 12049072 7836 D21S2083 4 Available data 14101786 14109473 7688 + PTB-080D12_RIKEN, PTB-258H22_RIKEN                      
C21orf126 PRED70, DKFZp434A171 spliced partial mRNA 2 spliced EST AA306657 Available data + 12098503 12103158 4656 C21orf126 2 Available data 14154172 14158756 4585 + PTB-274F15_RIKEN, PTB-407O15_RIKEN   2-way alignments AA306657 (127 aa/127 aa) 97 97 95 Protein motifs        
LIPI PRED5 putative gene, lipase (EC 3.1.1.3) like 1 BC028732 Available data - 12143005 12241141 98137 LIPI 1 Available data 14191011 14288927 97917 - PTB-005B20_RIKEN, PTB-274F15_RIKEN   2-way alignments BC028732 (273 aa/293 aa) 98         3-way alignment   Stop-codon change;
RBM11   Homo sapiens clone ns04h06 RNA binding motif protein 11 (RBM11) mRNA, complete cds 1 AF519623 AK091331 AY077695 BC030196 Available data + 12250350 12262568 12219 RBM11 1 Available data 14298146 14310330 12185 + PTB-005B20_RIKEN, RP43-011E05_RIKEN   2-way alignments AF519623 (233 aa/233 aa)
AK091331 (167 aa/167 aa)
AY077695 (167 aa/167 aa)
BC030196 (281 aa/281 aa)		 98.25 99 98.5 Protein motifs   3-way alignment    
ABCC13 C21orf73, PRED6 putative gene, multidrug resistance associated protein like 1 AF418600 AF518320 AY063514 AY063515 Available data + 12307991 12372209 64219 ABCC13 1 Available data 14356050 14385915 29866 + PTB-118J15_RIKEN, RP43-011E05_RIKEN   2-way alignments AF418600 (325 aa/19 aa)
AF518320 (245 aa/179 aa)
AY063514 (274 aa/19 aa)
AY063515 (140 aa/19 aa)		 98 99 97 Protein motifs tccta..acttt/tccta..acttt     Stop-codon change;
STCH   human microsomal stress 70 protein ATPase core 1 U04735 Available data - 12407033 12417347 10315 STCH 1 Available data 14459120 14469488 10369 - PTB-118J15_RIKEN Stch
AK021006 		2-way alignments U04735 (471 aa/471 aa) 99 99 99 Protein motifs   3-way alignment multiple-way alignment  
SAMSN1 SAMSN-1 SH3-SAM adaptor protein (HACS1) 1 AF218085 AF222927 Available data - 12519420 12617594 98175 SAMSN1 1 Available data 14584248 14682810 98563 - PTB-095F11_RIKEN, PTB-118J15_RIKEN Samsn1
AF222928 		2-way alignments AF218085 (441 aa/441 aa)
AF222927 (373 aa/373 aa)		 98 98 97 Protein motifs   3-way alignment    
POLR2CP   pseudogene similar to RNA polymerase H subunits 4     + 12791780 12793431 1652 POLR2CP 4 Available data 14854857 14856508 1652 + RP43-017I17_RIKEN                      
GAPDP16 G3P1_SCHPO_19 pseudogene for G3P2_HUMAN 4     + 12808495 12809672 1178 GAPDP16 4 Available data 14871758 14872939 1182 + RP43-017I17_RIKEN                      
NRIP1 RIP140 nuclear factor RIP140 1 X84373 Available data - 12995432 13002670 7239 NRIP1 1 Available data 15052998 15060235 7238 - RP43-009O02_RIKEN Nrip1
NM_008735 		2-way alignments X84373 (1158 aa/1158 aa) 98 99 99 Protein motifs   3-way alignment multiple-way alignment  
C21orf116 PRED82 Homo sapiens clone FLB9530 PRO2574 mRNA, complete cds 1 AF130090 Available data + 13084381 13086571 2191 C21orf116 1 Available data 15142336 15144537 2202 + RP43-009O02_RIKEN   2-way alignments AF130090 (69 aa/69 aa) 99 99 97 Protein motifs        
CYC1LP5   cytochrome C pseudogene 4     - 13523125 13524985 1861 CYC1LP5 4 Available data 15581434 15583283 1850 - PTB-080A13_RIKEN                      
RAD23BLP   UV excision repair protein pseudogene 4     - 13728490 13728582 93 RAD23BLP 4 Available data 15790372 15790464 93 - PTB-084P08_RIKEN                      
USP25   ubiquitin specific protease USP25 (EC 3.1.2.15) 1 AF170562 AK022574 AK022447 Available data + 13764215 13914248 150034 USP25 1 Available data 15823074 15972066 148993 + PTB-084P08_RIKEN, PTB-131J13_RIKEN, PTB-141K15_RIKEN Usp25
NM_013918 		2-way alignments AF170562 (1087 aa/1087 aa)
AK022447 (523 aa/523 aa)
AK022574 (737 aa/737 aa)		 99 99 99 Protein motifs   3-way alignment multiple-way alignment  
RBPMSLP   RNA-binding protein hermes pseudogene 4     - 13778194 13778379 186 RBPMSLP 4 Available data 15836959 15837144 186 - PTB-084P08_RIKEN                      
C21orf34 C21orf35 Homo sapiens C21ORF34 (C21orf34) mRNA, partial cds, alternatively spliced 1 AF486622 AK095614 Available data + 14104713 14643965 539253 C21orf34 1 Available data 16169721 16708753 539033 + PTB-018G23_RIKEN, PTB-078F18_RIKEN, PTB-087F19_RIKEN, RP43-172K02_RIKEN Full length cDNA
AK012955 		2-way alignments AF486622 (64 aa/64 aa)
AK095614 (83 aa/83 aa)		 99 99.5 98.5 Protein motifs        
VDAC2P   voltage-dependent anion channel isoform 2 pseudogene 4     - 14128697 14129597 901 VDAC2P 4 Available data 16193789 16194689 901 - PTB-018G23_RIKEN                      
RPS26P5 RS26_CRICR_30 ribosomal protein S26 pseudogene 5 4     - 14155434 14155856 423 RPS26P5 4 Available data 16221704 16222126 423 - PTB-018G23_RIKEN                      
C21orf36   unspliced partial mRNA 3 unspliced EST AA017197 HSM804588 Available data - 14647605 14653470 5866 C21orf36 3 Available data 16712411 16718306 5896 - PTB-087F19_RIKEN, RP43-172K02_RIKEN   2-way alignments   97              
C21orf37   spliced partial mRNA 2 spliced ESTs N47348 AI420675 N56968 N56968 AI360889 Available data - 15475976 15483370 7395 C21orf37 2 Available data 17546161 17553537 7377 - PTB-089G12_RIKEN   2-way alignments   99       gtatg..tacag/gtatg..tatag      
D21S2084   pseudogene for D79205 4     - 15534669 15535048 380 D21S2084 4 Available data 17605050 17605429 380 - PTB-089G12_RIKEN                      
CXADR HCAR, HCAR2, CAR, CVB3 coxsackievirus B-adenovirus receptor protein 1 BC010536 U90716 Y07593 Available data + 15547244 15601157 53914 CXADR § 1 Available data 17617686 17671698 54013 + PTB-089G12_RIKEN Cxadr
NM_009988 		2-way alignments BC010536 (365 aa/365 aa)
U90716 (365 aa/365 aa)
Y07593 (365 aa/365 aa)		 99 99 100 Protein motifs   3-way alignment    
BTG3 ANA like, TOB5 B-cell translocation gene 1 D64110 Available data - 15627925 15646976 19052 BTG3 1 Available data 17698747 17717808 19062 - PTB-003F15_RIKEN Btg3
NM_009770 		2-way alignments D64110 (252 aa/252 aa) 99 99 99 Protein motifs   3-way alignment multiple-way alignment  
C21orf114 PRED75 homolog to a Homo sapiens B lymphocyte activation-related protein BC-2048 mRNA, complete cds (AF304443) 3   Available data + 15739597 15741644 2048 C21orf114 3 Available data 17810319 17812389 2071 + PTB-003F15_RIKEN   2-way alignments AF304443 (209 aa/36 aa) 98             Stop-codon change;
C21orf91 YG81 gene of unknown function 1 AF239726 AK023825 BC015468 Available data - 15823185 15853561 30377 C21orf91 1 Available data 17895064 17924855 29792 - PTB-005J02_RIKEN D16ertd472e
NM_025967 		2-way alignments AF239726 (221 aa/221 aa)
AK023825 (297 aa/297 aa)
BC015468 (139 aa/296 aa)		 98.66666667 99 99 Protein motifs   3-way alignment multiple-way alignment  
C21orf39   spliced partial mRNA 2 spliced ESTs T74237 F12577 R54144 Available data - 15869820 15919819 50000 C21orf39 2 Available data 17941121 17991325 50205 - CH251-530H12_RIKEN, PTB-005J02_RIKEN   2-way alignments F12577 (24 aa/24 aa)
R54144 (24 aa/24 aa)
T74237 (24 aa/24 aa)		 99 100 100 Protein motifs        
RPL37P3 RL37P human ribosomal protein L37 pseudogene 4     - 15928363 15928729 367 RPL37P3 4 Available data 18000381 18000747 367 - CH251-530H12_RIKEN                      
CHODL C21orf68, PRED12 weakly similar to LECTIN BRA-2 1 AF257472 AK022689 BC009418 Available data + 15935473 16301589 366117 CHODL § 1 Available data 18007482 18373344 365863 + CH251-530H12_RIKEN, PTB-022L23_RIKEN, PTB-075B06_RIKEN, RP43-149B05_RIKEN Chodl
AK014255 		2-way alignments AF257472 (273 aa/273 aa)
AK022689 (232 aa/232 aa)
BC009418 (273 aa/273 aa)		 99 99 100 Protein motifs   3-way alignment multiple-way alignment  
PRSS7 ENTK human enterokinase; EC 3.4.21.9. 1 U09860 Available data - 16303583 16437866 134284 PRSS7 1 Available data 18375308 18509210 133903 - RP43-149B05_RIKEN, RP43-169N06_RIKEN Prss7
U73378 		2-way alignments U09860 (1019 aa/1019 aa) 98 99 98 Protein motifs gtagg..catag/gtaag..catag gtatg..ttcag/gtatc..ttcag 3-way alignment multiple-way alignment  
PPIA3L   peptidylprolyl isomerase A (cyclophilin A)-like 3 1 BC007104 BC013915 BC018843 XM_039520 Available data + 16891948 16892707 760 PPIA3L ¦ 1 Available data 18946211 18946968 758 + PTB-042H12_RIKEN   2-way alignments BC007104 (165 aa/165 aa)
BC013915 (165 aa/165 aa)
BC018843 (165 aa/165 aa)
XM_039520 (165 aa/165 aa)		 98 98 98 Protein motifs        
SLC6A6P   taurine transporter processed pseudogene 4     + 17186555 17280592 94038 SLC6A6P 4 Available data 19239013 19333951 94939 + RP43-038C12_RIKEN, RP43-069C10_RIKEN, RP43-069G03_RIKEN                      
RPL37P4 RL37P2 human ribosomal protein L37 pseudogene 4     + 17628011 17628378 368 RPL37P4 4 Available data 19672791 19673155 365 + RP43-049N07_RIKEN                      
C1QBPP   human splicing factor 2 hyaluronic acid-binding protein (SF2p32) pseudogene 4     - 17793327 17794335 1009 C1QBPP 4 Available data 19837895 19838905 1011 - RP43-136G21_RIKEN, RP43-147F06_RIKEN                      
C21orf40   spliced partial mRNA 2 spliced EST AA412132 Available data - 17927486 17933962 6477 C21orf40 2 Available data 19972454 19978951 6498 - RP43-138K13_RIKEN   2-way alignments   99       gtaag..catag/gtaag..ctgag      
FDPSP   farnesyl pyrophosphate synthetase processed pseudogene 4     + 18422538 18423050 513 FDPSP 4 Available data 20466040 20466552 513 + PTB-027C13_RIKEN                      
KRT18P2   cytokeratin 18 processed pseudogene 4     - 18459100 18460344 1245 KRT18P2 4 Available data 20502631 20503875 1245 - PTB-027C13_RIKEN                      
RPS3AP1 RPS3AP ribosomal protein S3 processed pseudogene 4     - 18464604 18464967 364 RPS3AP1 4 Available data 20507998 20508386 389 - PTB-027C13_RIKEN                      
C21orf131 FLJ37539, PRED14 human cDNA clone 280692 2 spliced EST AK094858 Available data - 18776801 18837268 60468 C21orf131 2 Available data 20821229 20878688 57460 - RP43-044K09_RIKEN   2-way alignments AK094858 (52 aa/52 aa)
N50515 (52 aa/52 aa)		 98.33333333 97 92 Protein motifs        
PPIAP   cyclophilin-related processed pseudogene 4     - 18862129 18862845 717 PPIAP 4 Available data 20904134 20904852 719 - RP43-044K09_RIKEN                      
NCAM2 NCAM21 neural cell adhesion molecule 2 precursor 1 U75330 Available data + 19032715 19574307 541593 NCAM2 1 Available data 21074670 21618136 543467 + CH251-126A17_RIKEN, PTB-401N11_RIKEN, RP43-046F21_RIKEN, RP43-073J16_RIKEN, RP43-104O21_RIKEN Ncam2
NM_010954 		2-way alignments U75330 (837 aa/837 aa) 99 99 99 Protein motifs   3-way alignment multiple-way alignment  
PRED15   exon prediction only 3   Available data + 19660738 19790540 129803 PRED15 3 Available data 21705502 21918004 212503 + PTB-072G02_RIKEN, RP43-040P11_RIKEN, RP43-104O21_RIKEN, RP43-156P08_RIKEN   2-way alignments   97       atttg..gcaac/acttg..gcaac      
C21orf117 PRED89 Homo sapiens cDNA clone IMAGE:3953669, partial cds 1 BC009878 Available data - 19757506 19771532 14027 C21orf117 1 Available data 21802648 21816706 14059 - RP43-156P08_RIKEN RP43-040P11_RIKE PTB-072G02_RIKEN   2-way alignments BC009878 (38 aa/38 aa) 95 96 89 Protein motifs        
C21orf74 PRED16 Homo sapiens clone qd65g07 PRED16 protein (PRED16) mRNA, complete cds 1 AY077696 Available data + 20132828 20150739 17912 C21orf74 1 Available data 22175199 22191815 16617 + PTB-096O09_RIKEN, RP43-076N07_RIKEN   2-way alignments AY077696 (52 aa/79 aa or 48 aa) 98             Stop-codon change;
Pseudo3   ETS-like processed pseudogene 4     - 20202128 20202626 499 Pseudo3 4 Available data 22243233 22243726 494 - RP43-076N07_RIKEN                      
Pseudo4   ERK3 protein kinase pseudogene 4     - 20469237 20473024 3788 Pseudo4 4 Available data 22479643 22483552 3910 - RP43-047O12_RIKEN                      
MAPK6P   pseudogene for L77964 4     - 20470168 20473255 3088 MAPK6P 4 Available data 22480574 22483783 3210 - RP43-047O12_RIKEN                      
ZNF299P   zinc finger-like processed pseudogene 4     - 21124020 21125750 1731 ZNF299P 4 Available data 23117448 23119180 1733 - RP43-164H01_RIKEN                      
EEF1A1P   human elongation factor EF-1-alpha processed pseudogene 4     + 21424471 21425507 1037 EEF1A1P 4 Available data 23374382 23375418 1037 + RP43-110O22_RIKEN                      
TUBAP   alpha tubulin (TUBA2) processed pseudogene 4     - 21441679 21443420 1742 TUBAP 4 Available data 23392934 23394675 1742 - RP43-110O22_RIKEN                      
RPL13AP7 RPL13AP ribosomal protein RPL13A pseudogene 4     + 23396029 23397141 1113 RPL13ALK1 3 Available data 25190421 25191556 1136 + PTB-031J04_RIKEN                      
C21orf42   Homo sapiens C21orf42 protein mRNA, complete cds 1 AY035382 AY035383 Available data - 23420031 23465905 45875 C21orf42 1 Available data 25214470 25260311 45842 - PTB-031J04_RIKEN   2-way alignments AY035382 (81 aa/81 aa)
AY035383 (81 aa/81 aa)		 98 99 98 Protein motifs        
C21orf71 PRED21 gene of unknown function 1 AF086441 Available data - 23616979 23617428 450 C21orf71 1 Available data 25410941 25411390 450 - RP43-117B17_RIKEN   2-way alignments AF086441 (83 aa/105 aa) 97 97 93 Protein motifs       Stop-codon change;
MRPL39 PRED22, PRED66 mitochondrial ribosomal protein L39 1 AK000458 AF239727 Available data - 23619860 23641685 21826 MRPL39 1 Available data 25413827 25435872 22046 - RP43-117B17_RIKEN Mrpl39
NM_017404 		2-way alignments AK000458 (338 aa/338 aa) 98 98 97 Protein motifs   3-way alignment multiple-way alignment  
JAM2 C21orf43 junctional adhesion molecule 2 1 AF255910 AY016009 BC017779 Available data + 23673792 23749126 75335 JAM2 § 1 Available data 25468040 25543603 75564 + PTB-082I14_RIKEN, RP43-117B17_RIKEN Full length cDNA
AF255911 		2-way alignments AF255910 (294 aa/294 aa)
AY016009 (294 aa/294 aa)
BC017779 (294 aa/294 aa)		 99 99 100 Protein motifs   3-way alignment    
FDXP2   adrenodoxin pseudogene 4     + 23727343 23727884 542 FDXP2 4 Available data 25521813 25522357 545 + PTB-082I14_RIKEN                      
ATP5J ATP5A mitochondrial ATPase coupling factor 6 subunit 1 AL110183 M73031 M37104 Available data - 23758703 23769129 10427 ATP5J ¦ 1 Available data 25553188 25563621 10434 - PTB-082I14_RIKEN Atp5a1
U77128 		2-way alignments AL110183 (108 aa/108 aa)
M37104 (108 aa/108 aa)
M73031 (108 aa/108 aa)		 98 98 98 Protein motifs   3-way alignment multiple-way alignment  
GABPA E4TF1-60, E4TF-60, E4TF1A human nuclear respiratory factor-2 subunit alpha 1 D13318 U13044 Available data + 23769616 23803855 34240 GABPA § 1 Available data 25564108 25598653 34546 + PTB-082I14_RIKEN Gabpa
NM_008065 		2-way alignments D13318 (454 aa/454 aa)
U13044 (454 aa/454 aa)		 99 99 100 Protein motifs   3-way alignment multiple-way alignment  
APP A4, Beta-APP, AD1, CVAP amyloid A4 precursor of Alzheimer's disease 1 Y00264 A02759 A31584 A33292 A33293 A33293 E02400 M18734 M33112 X06989 Available data - 23914527 24204977 290451 APP 1 Available data 25709735 25995076 285342 - PTB-155J22_KRIBB, RP43-093B21_KRIBB, RP43-160M11_KRIBB App
NM_007471 		2-way alignments A02759 (695 aa/695 aa)
A31584 (770 aa/770 aa)
A33292 (695 aa/695 aa)
A33293 (751 aa/751 aa)
E02400 (770 aa/770 aa)
M18734 (264 aa/264 aa)
X06989 (751 aa/751 aa)
Y00264 (695 aa/695 aa)		 98.88888889 99 99.5 Protein motifs   3-way alignment multiple-way alignment  
C21orf118 PRED85 B lymphocyte activation-related protein BC-1514 mRNA, complete cds 1 AF304442 Available data + 24252124 24253637 1514 C21orf118 1 Available data 26044502 26046016 1515 + PTB-155J22_KRIBB   2-way alignments AF304442 (130 aa/35 aa) 98           multiple-way alignment Stop-codon change;
C21orf79 PRED24 homolog to a Homo sapiens mRNA, gene similar to MARCKS (AL117624) 3   Available data + 24261909 24268437 6529 C21orf79 3 Available data 26054276 26060847 6572 + PTB-155J22_KRIBB   2-way alignments AL117624 (84 aa/38 aa) 98             Stop-codon change;
MACSL1   pseudogene for HUMKCS 4     - 24269052 24270125 1074 MACSL1 4 Available data 26061462 26062550 1089 - PTB-155J22_KRIBB                      
CYYR1   cysteine and tyrosine-rich protein 1 mRNA, complete cds 1 AF401639 AK054581 AY061853 Available data - 24500560 24607495 106936 CYYR1 1 Available data 26290663 26397836 107174 - PTB-029N08_KRIBB, RP43-017N02_KRIBB, RP43-018H16_KRIBB Cyyr1
NM_144853 		2-way alignments AF401639 (154 aa/154 aa)
AK054581 (262 aa/262 aa)
AY061853 (154 aa/154 aa)		 99 99 98 Protein motifs   3-way alignment    
RPLP1
chr.15		   ribosomal protein, large, P1   NM_001003           RPLP1LK1 3 Available data 26390907 26391416 510 + RP43-018H16_KRIBB                      
ADAMTS1 METH1 metalloproteinase with thrombospondin type 1 motifs 1 AF170084 AF060152 AF207664 Available data - 24870498 24879607 9110 ADAMTS1 1 Available data 26655879 26664992 9114 - RP43-022K21_KRIBB Adamts1
NM_009621 		2-way alignments AF060152 (967 aa/967 aa)
AF170084 (967 aa/967 aa)
AF207664 (967 aa/967 aa)		 99 99 99 Protein motifs   3-way alignment multiple-way alignment  
ADAMTS5 ADAMTS11 aggrecanase-2 mRNA 1 AF142099 Available data - 24955655 25000724 45070 ADAMTS5 1 Available data 26741120 26786360 45241 - PTB-042D04_KRIBB, RP43-022K21_KRIBB Adamts5
AF140673 		2-way alignments AF142099 (930 aa/275 aa)
NM_007038 (930 aa/275 aa)		 99         3-way alignment multiple-way alignment  
GPXP2   human glutathione peroxidase (GPXP2) pseudogene 4     - 25177334 25178278 945 GPXP2 4 Available data 26962923 26963863 941 - RP43-036K01_KRIBB                      
EIF4A1P   eukaryotic initiation factor 4AI pseudogene 4     - 25401223 25402162 940 EIF4A1P 4 Available data 27187588 27188526 939 - RP43-057N15_KRIBB                      
RPL10P1 RPL10P 60S ribosomal protein L10 pseudogene 4     - 25454502 25455274 773 RPL10P1 4 Available data 27240763 27241535 773 - RP43-057N15_KRIBB                      
D21S2073   KIAA0253 pseudogene 4     + 25526348 25527150 803 D21S2073 4 Available data 27312733 27313537 805 + PTB-004I03_KRIBB                      
C21orf23   spliced partial mRNA 2 spliced ESTs AI796012 AI793052 AI261615 AI765751 AI793228 AW290999 BF434914 AI631963 AW237689 AW294047 Available data + 25756590 25785444 28855 C21orf23 2 Available data 27546731 27575878 29148 + PTB-057K02_KRIBB   2-way alignments AI793052 (60 aa/60 aa)
AW290999 (60 aa/60 aa)		 98 97 93 Protein motifs        
C21orf94   chromosome 21 open reading frame 94 (C21orf94), mRNA 1 NM_145180 Available data + 26047593 26057165 9573 C21orf94 1 Available data 27837669 27847218 9550 + RP43-010G23_KRIBB   2-way alignments NM_145180 (62 aa/62 aa) 97 96 91 Protein motifs        
C21orf100   chromosome 21 open reading frame 100 (C21orf100), mRNA 1 AY063458 AY063459 NM_145033   + 26573532 26574569 1038 C21orf100 1 Available data 28360757 28361793 1037 + RP43-094M15_CHGC   2-way alignments AY063458 (55 aa/55 aa)
AY063459 (55 aa/55 aa)
NM_145033 (55 aa/55 aa)		 98 98 98 Protein motifs        
C21orf127 DNMTA1, PRED28 DNA-methyltransferase (adenine-specific) 1, putative (N6-DNA-methyltransferase) 1 AF139682 Available data - 26910367 26919585 9219 C21orf127 1 Available data 28691767 28700951 9185 - RP43-042E01_CHGC N6amt1
AK012019 		2-way alignments AF139682 (214 aa/214 aa) 98 98 96 Protein motifs gtgcg..ttcag/gtgcg..tttag 3-way alignment multiple-way alignment  
HSPDP7   human chaperonin pseudogene 4     - 26921200 26923504 2305 HSPDP7 4 Available data 28702561 28704858 2298 - RP43-042E01_CHGC                      
D21S2085   pseudogene for AK000281 4     - 26933992 26937978 3987 D21S2085 4 Available data 28714796 28718817 4022 - RP43-042E01_CHGC                      
ZNF294 KIAA0714 human mRNA for KIAA0714 protein 1 AB018257 Available data - 26962358 27000743 38386 ZNF294 1 Available data 28743544 28781924 38381 - RP43-042E01_CHGC Znf294
XM_128374 		2-way alignments AB018257 (680 aa/680 aa) 99 99 99 Protein motifs gtagg..tccag/gtagg..tctag 3-way alignment multiple-way alignment  
C21orf98 FLJ11053 Unknown function 1 AK001915 AK023499 Available data - 27000616 27027115 26500 C21orf98 1 Available data 28781797 28808364 26568 - RP43-042E01_CHGC   2-way alignments AK001915 (630 aa/630 aa)
AK023499 (354 aa/354 aa)		 99 99 99 Protein motifs gcaag..tttag/gcaag..tttag      
RPL23P2   60S ribosomal protein L23 pseudogene 4     - 27031781 27032257 477 RPL23P2 4 Available data 28813025 28813500 476 - RP43-042E01_CHGC                      
C21orf6   chromosome 21 open reading frame 6 1 AF212232 AK000056 BC012546 BC017912 Y19009 Available data - 27039971 27053574 13604 C21orf6 1 Available data 28821233 28835123 13891 - RP43-042E01_CHGC ORF5
NM_016924 		2-way alignments AF212232 (319 aa/319 aa)
AK000056 (319 aa/319 aa)
BC012546 (319 aa/319 aa)
BC017912 (319 aa/319 aa)
Y19009 (319 aa/319 aa)		 99 99 99 Protein motifs   3-way alignment multiple-way alignment  
USP16 Ubp-M, MSTP039 ubiquitin processing protease, EC 3.1.2.15. 1 AF113219 AF126736 AK023247 AK025104 Available data + 27058863 27088702 29840 USP16 1 Available data 28840473 28872131 31659 + PTB-083K24_CHGC Usp16
NM_024258 		2-way alignments AF113219 (644 aa/647 aa)
AF126736 (823 aa/826 aa)
AK023247 (644 aa/647 aa)
AK025104 (822 aa/825 aa)		 98.5 99 99 Protein motifs   3-way alignment multiple-way alignment 3 aa insertion;
CCT8 CCT-THETA, CCTQ, KIAA0002, TCP-1-THETA T-complex protein 1, theta subunit 1 BC012584 D13627 Available data - 27090538 27106431 15894 CCT8 ¦ 1 Available data 28873991 28891329 17339 - PTB-083K24_CHGC Cct8
NM_009840 		2-way alignments BC012584 (497 aa/497 aa)
D13627 (380 aa/380 aa)		 99 99 99 Protein motifs gcaag..tttag/gcaag..tttag 3-way alignment multiple-way alignment  
C21orf112 PRED71 exon prediction supported by unspliced ESTs 3 unspliced EST BF694301 Available data + 27106024 27106485 462 C21orf112 ¦ 3 Available data 28890922 28891479 558 + PTB-083K24_CHGC   2-way alignments BF694301 (149 aa/149 aa)
GenScan160-2 (97 aa/180 aa)		 99 99 97 Protein motifs        
C21orf7   putative gene, TGF-beta-activated kinase like 1 AF269161 AF269162 AF269163 AF269164 AY033900 Available data + 27110429 27208676 98248 C21orf7 1 Available data 28895339 28996828 101490 + PTB-083K24_CHGC, PTB-086M04_CHGC C21orf7
NM_144854 		2-way alignments AF269161 (242 aa/242 aa)
AF269162 (138 aa/138 aa)
AF269163 (145 aa/145 aa)
AF269164 (142 aa/142 aa)
AY033900 (142 aa/142 aa)		 99 99 99 Protein motifs gtaat..catag/gtgat..catag 3-way alignment multiple-way alignment  
RPL12P9 RL12_HUMAN_71 ribosomal protein L12 pseudogene 9 4     - 27160445 27161052 608 RPL12P9 4 Available data 28948543 28949150 608 - RP43-154K22_CHGC, PTB-086M04_CHGC                      
C21orf109   Homo sapiens chromosome 21 open reading frame 109 (C21orf109) mRNA, complete cds 1 AF490769 Available data + 27226269 27320994 94726 C21orf109 ¶§ 1 Available data 29014336 29111823 97488 + PTB-016G04_CHGC, PTB-086M04_CHGC   2-way alignments AF490769 (51 aa/51 aa) 100 100 100 Protein motifs gtaag..tatag/gtaag..tacag      
GAPDP14   glycerinaldehyde-3-phosphate dehydrogenase pseudogene 4     + 27255065 27256255 1191 GAPDP14 4 Available data 29043137 29044327 1191 + PTB-086M04_CHGC                      
BACH1   transcription regulator protein 1 AB002803 AF026199 Available data + 27331684 27378774 47091 BACH1 1 Available data 29122477 29170505 48029 + PTB-016G04_CHGC Bach1
NM_007520 		2-way alignments AB002803 (736 aa/736 aa)
AF026199 (736 aa/736 aa)		 99 99 99 Protein motifs   3-way alignment multiple-way alignment  
C21orf12   spliced partial mRNA (trapped exon) 2 spliced EST R82144 Available data - 27402809 27404015 1207 C21orf12 2 Available data 29194499 29195699 1201 - PTB-016G04_CHGC   2-way alignments   97       gtagg..cccag/gttgt..ttgca      
C21orf8   spliced partial mRNA 2 spliced EST AA843704 Available data + 27528869 27533171 4303 C21orf8 2 Available data 29320652 29324951 4300 + PTB-258K22_CHGC   2-way alignments AA843704 (37 aa/37 aa) 99 98 94 Protein motifs        
GRIK1 GLUR5, GLR5, GLR-5 human glutamate receptor (GLUR5) 1 L19058 Available data - 27569991 27972698 402708 GRIK1 § 1 Available data 29361788 29738405 376618 - PTB-091H17_CHGC, PTB-137B16_CHGC, RP43-006O21_CHGC Grik1
X66118 		2-way alignments AJ249208 (905 aa/905 aa)
L19058 (918 aa/918 aa)		 99 99 100 Protein motifs gcaag..cacag/gcaag..cacag 3-way alignment    
C21orf41   Homo sapiens C21ORF41 (C21ORF41) mRNA, complete cds 1 AY081145 Available data + 27628828 27663535 34708 C21orf41 ¶§ 1 Available data 29419653 29454372 34720 + PTB-137B16_CHGC   2-way alignments AY081145 (40 aa/40 aa) 98 100 100 Protein motifs        
C21orf9   Homo sapiens clone qa81f10 C21ORF9 (C21orf9) mRNA, complete cds 1 AY077697 Available data + 27781725 27796779 15055 C21orf9 1 Available data 29569710 29584804 15095 + PTB-091H17_CHGC   2-way alignments AY077697 (36 aa/29 aa) 99     Protein motifs       Methionine change;
CLDN17 Claudin-17 human CLDN17 gene for claudin-17 1 AJ250712 Available data - 28198729 28199403 675 CLDN17 1 Available data 29965451 29966125 675 - PTB-118H03_CHGC   2-way alignments AJ250712 (224 aa/224 aa) 99 99 98 Protein motifs     multiple-way alignment  
CLDN8 Claudin-8 human CLDN8 gene for claudin-8 1 AJ250711 AK022269 BC020866 Available data - 28246793 28248859 2067 CLDN8 1 Available data 30014489 30016557 2069 - PTB-118H03_CHGC, RP43-042C06_CHGC Cldn8
NM_018778 		2-way alignments AJ250711 (225 aa/225 aa)
AK022269 (225 aa/225 aa)
BC020866 (225 aa/225 aa)		 98 99 99 Protein motifs   3-way alignment multiple-way alignment  
RPL8P2   pseudogene for BC000047 4     - 28296124 28296667 544 RPL8P2 4 Available data 30063887 30064430 544 - RP43-042C06_CHGC                      
KRTAP23-1   human hair keratin-associated protein 23.1 1   Available data - 28381185 28381392 208 KRTAP23-1 1 Available data 30148900 30149102 203 - RP43-082J09_CHGC RP43-042C06_CHGC   2-way alignments (65 aa/64 aa) 98             Methionine change;
KRTAP13P2 KRTAP13B human hair keratin-associated pseudogene 4     - 28389560 28389660 101 KRTAP13P2 4 Available data 30157288 30157388 101 - RP43-082J09_CHGC RP43-042C06_CHGC                      
KRTAP13-2   human hair keratin-associated protein 13.2 1   Available data - 28404472 28404999 528 KRTAP13-2 1 Available data 30172158 30172685 528 - RP43-082J09_CHGC   2-way alignments (175 aa/175 aa) 98 98 97 Protein motifs        
KRTAP13-1   human hair keratin-associated protein 13.1 1 AJ457066 Available data + 28428992 28429608 617 KRTAP13-1 1 Available data 30196848 30197464 617 + RP43-082J09_CHGC   2-way alignments AJ457066 (132 aa/132 aa) 98 98 98 Protein motifs     multiple-way alignment  
KRTAP13-3   human hair keratin-associated protein 13.3 1   Available data - 28458179 28458698 520 KRTAP13-3             genomic gap                      
KRTAP13-4   human hair keratin-associated protein 13.4 1   Available data + 28463062 28463544 483 KRTAP13-4             genomic gap                      
KRTAP13P1 KRTAP13A human hair keratin-associated pseudogene 4     - 28469440 28469739 300 KRTAP13P1 4 Available data 30212915 30213207 293 - RP43-082J09_CHGC                      
KRTAP15-1   human hair keratin-associated protein 15.1 1   Available data + 28473114 28473566 453 KRTAP15-1 1 Available data 30216582 30217034 453 + RP43-082J09_CHGC   2-way alignments (137 aa/71 aa) 98           multiple-way alignment Stop-codon change;
KRTAP19-1   human hair keratin-associated protein 19.1 1 AJ457067 Available data - 28512486 28513100 615 KRTAP19-1 1 Available data 30253876 30254494 619 - RP43-082J09_CHGC   2-way alignments AJ457067 (88 aa/88 aa) 97 98 95 Protein motifs     multiple-way alignment  
KRTAP19-2   human hair keratin-associated protein 19.2 1   Available data - 28519977 28520135 159 KRTAP19-2             genomic gap                      
KRTAP19-3   human hair keratin-associated protein 19.3 1   Available data - 28524496 28524743 248 KRTAP19-3 1 Available data 30259910 30260157 248 - RP43-082J09_CHGC   2-way alignments (81 aa/81 aa) 95 97 98 Protein motifs        
KRTAP19-4   human hair keratin-associated protein 19.4 1   Available data - 28529642 28529896 255 KRTAP19-4 1 Available data 30265081 30265337 257 - RP43-082J09_CHGC   2-way alignments (84 aa/63 aa) 97             Stop-codon change;
KRTAP19-5   human hair keratin-associated protein 19.5 1   Available data - 28534658 28534876 219 KRTAP19-5 § 1 Available data 30270068 30270286 219 - RP43-082J09_CHGC   2-way alignments (72 aa/72 aa) 99 99 100 Protein motifs        
KRTAP19P1 KRTAP19A human hair keratin-associated pseudogene 4     - 28543072 28543274 203 KRTAP19P1 4 Available data 30278483 30278685 203 - RP43-082J09_CHGC                      
KRTAP19P2 KRTAP19B human hair keratin-associated pseudogene 4     - 28547365 28547616 252 KRTAP19P2 4 Available data 30282756 30283007 252 - RP43-082J09_CHGC                      
KRTAP19P3 KRTAP19C human hair keratin-associated pseudogene 4     - 28569964 28570194 231 KRTAP19P3 4 Available data 30305326 30305558 233 - RP43-184I13_CHGC                      
KRTAP19-6   human hair keratin-associated protein 19.6 1   Available data - 28574444 28574620 177 KRTAP19-6             genomic gap                      
KRTAP19-7   human hair keratin-associated protein 19.7 1   Available data - 28593885 28594076 192 KRTAP19-7             genomic gap                      
KRTAP6-3   human hair keratin-associated protein 6.3 1   Available data + 28625253 28625565 313 KRTAP6-3 1 Available data 30334711 30334993 283 + RP43-184I13_CHGC   2-way alignments (103 aa/93 aa) 83              
KRTAP6-2   human hair keratin-associated protein 6.2 1   Available data - 28631473 28631661 189 KRTAP6-2 1 Available data 30341687 30341875 189 - RP43-184I13_CHGC   2-way alignments (62 aa/62 aa) 96 98 98 Protein motifs        
KRTAP22-1   human hair keratin-associated protein 22.1 1   Available data + 28633908 28634054 147 KRTAP22-1 1 Available data 30344133 30344279 147 + RP43-184I13_CHGC   2-way alignments (48 aa/48 aa) 97 97 97 Protein motifs        
KRTAP6-1 C21orf103 human hair keratin-associated protein 6.1 1   Available data - 28646180 28646693 514 KRTAP6-1 1 Available data 30356397 30356909 513 - RP43-184I13_CHGC   2-way alignments (71 aa/71 aa) 98 98 98 Protein motifs        
KRTAP20-1   human hair keratin-associated protein 20.1 1   Available data + 28649242 28649412 171 KRTAP20-1 1 Available data 30359458 30359628 171 + RP43-184I13_CHGC   2-way alignments (56 aa/56 aa) 98 98 98 Protein motifs        
KRTAP20-2   human hair keratin-associated protein 20.2 1   Available data + 28668051 28668248 198 KRTAP20-2 1 Available data 30378284 30378481 198 + RP43-184I13_CHGC   2-way alignments (65 aa/65 aa) 98 98 95 Protein motifs        
KRTAP19P4 KRTAP19D human hair keratin-associated pseudogene 4     + 28675676 28675810 135 KRTAP19P4 4 Available data 30385905 30386039 135 + RP43-184I13_CHGC                      
KRTAP21P1 KRTAP21A human hair keratin-associated pseudogene 4     - 28774566 28775399 834 KRTAP21P1 4 Available data 30484622 30490454 5833 - PTB-020H02_RIKEN                      
KRTAP21-2   human hair keratin-associated protein 21.2 1   Available data - 28779737 28779988 252 KRTAP21-2 1 Available data 30490281 30490562 282 - PTB-020H02_RIKEN   2-way alignments (83 aa/83 aa) 93 93 89 Protein motifs        
KRTAP21-1   human hair keratin-associated protein 21.1 1   Available data - 28787925 28788164 240 KRTAP21-1 1 Available data 30498483 30498752 270 - PTB-020H02_RIKEN   2-way alignments (79 aa/79 aa) 94 94 89 Protein motifs     multiple-way alignment  
KRTAP8P1 KRTAP8A human hair keratin-associated pseudogene 4     - 28835028 28835150 123 KRTAP8P1 4 Available data 30545737 30545859 123 - PTB-020H02_RIKEN                      
KRTAP8P2 KRTAP8B human hair keratin-associated pseudogene 4     - 28839775 28839885 111 KRTAP8P2 4 Available data 30550482 30550592 111 - PTB-020H02_RIKEN                      
KRTAP8-1   human hair keratin-associated protein 8.1 1 AJ457064 Available data - 28845480 28846038 559 KRTAP8-1 ¶§ 1 Available data 30556161 30556723 563 - PTB-020H02_RIKEN   2-way alignments AJ457064 (63 aa/63 aa) 98 100 100 Protein motifs     multiple-way alignment  
KRTAP7-1   human hair keratin-associated protein 7.1 1 AJ457063 Available data - 28861825 28862395 571 KRTAP7-1 1 Available data 30572547 30573117 571 - PTB-237C02_RIKEN   2-way alignments AJ457063 (57 aa/57 aa) 99 98 96 Protein motifs        
KRTAP11-1 PRED29 human hair keratin-associated protein 11.1 1   Available data - 28913432 28914404 973 KRTAP11-1 1 Available data 30622132 30623104 973 - PTB-237C02_RIKEN hacl-1
U03686 		2-way alignments AJ457065 (163 aa/163 aa) 98 98 98 Protein motifs   3-way alignment multiple-way alignment  
UBE3AP2   ubiquitin protein ligase, processed pseudogene 4     - 29093364 29095964 2601 UBE3AP2 4 Available data 30802526 30805138 2613 - PTB-090P24_RIKEN, RP43-150L08_RIKEN                      
TIAM1   human T-lymphoma invasion and metastasis inducing TIAM1 protein 1 U16296 Available data - 29152958 29591767 438810 TIAM1 1 Available data 30864662 31304062 439401 - PTB-090P24_RIKEN, PTB-093K04_RIKEN, RP43-098E13_RIKEN Tiam1
NM_009384 		2-way alignments U16296 (1591 aa/1591 aa) 99 99 99 Protein motifs gtatg..cccag/gtacg..cccag 3-way alignment multiple-way alignment  
D21S2086 PRED31 pseudogene for AF151064 4     + 29485242 29486073 832 D21S2086 4 Available data 31198020 31198850 831 + RP43-076J24_RIKEN                      
FBXW1BP   pseudogene for AB014596 4     - 29656742 29661390 4649 FBXW1BP 4 Available data 31370066 31374683 4618 - RP43-098E13_RIKEN                      
FBXW1BP1 BTRC2P pseudogene similar to BTRC 4     - 29659413 29661390 1978 FBXW1BP1 4 Available data 31372730 31374683 1954 - RP43-098E13_RIKEN                      
SOD1 ALS, ALS1 Cu/Zn superoxide dismutase, EC 1.15.1.1. 1 E00882 E06743 E06789 M13267 X02317 Available data + 29692353 29701663 9311 SOD1 §¦ 1 Available data 31408261 31416210 7950 + RP43-098E13_RIKEN, RP43-168A22_RIKEN Sod1
M35725 		2-way alignments E00882 (154 aa/154 aa)
E06743 (154 aa/154 aa)
E06789 (154 aa/154 aa)
M13267 (154 aa/154 aa)
X02317 (154 aa/154 aa)		 99 99 100 Protein motifs gcaag..taaag/gcaag..taaag 3-way alignment    
SFRS15 CTDBP, CTBP2, rA4 pre-mRNA splicing SR protein rA4 1 AB032998 AF023142 AK025748 AL117417 HSM805342 Available data - 29703740 29764638 60899 SFRS15 1 Available data 31418282 31479910 61629 - RP43-098E13_RIKEN, RP43-168A22_RIKEN Ctdbp
XM_128369 		2-way alignments AB032998 (925 aa/925 aa)
AF023142 (1156 aa/1156 aa)
AK025748 (940 aa/940 aa)
AL117417 (527 aa/526 aa)
HSM805342 (1193 aa/1193 aa)		 99 99 99.6 Protein motifs   3-way alignment    
HMG14P   nonhistone chromosomal protein HMG-14 pseudogene 4     + 29739233 29739921 689 HMG14P 4 Available data 31454482 31455175 694 + RP43-168A22_RIKEN                      
TPT1P   pseudogene for X16064 4     + 29872987 29873803 817 TPT1P 4 Available data 31588242 31589055 814 + PTB-118B22_IMB, PTB-419O23_IMB                      
HUNK PRED33 hormonally upregulated Neu-associated kinase 1 AJ271722 Available data + 29906055 30036804 130750 HUNK 1 Available data 31622500 31752351 129852 + PTB-083P20_IMB, PTB-118B22_IMB, PTB-419O23_IMB Hunk
AF167987 		2-way alignments AJ271722 (714 aa/714 aa) 98 99 99 Protein motifs gtaag..tgtag/gtaag..tgcag 3-way alignment multiple-way alignment  
HNRPA1
chr.12		   heterogeneous nuclear ribonucleoprotein A1   NM_002136           HNRPA1LK1 ¦ 3 Available data 31680423 31681781 1359 + PTB-118B22_IMB                      
C21orf44   spliced partial mRNA 2 spliced ESTs AW138869 AI867145 Available data + 30113051 30230553 117503 C21orf44 2 Available data 31829640 31946483 116844 + PTB-083P20_IMB   2-way alignments   97.5       gtgag..agcag/atgag..agcag      
C21orf45   gene of unknown function 1 AF231921 AF387845 Available data - 30301691 30311776 10086 C21orf45 1 Available data 32017002 32027060 10059 - RP43-046M07_IMB Full length cDNA
AK012533 		2-way alignments AF231921 (233 aa/233 aa)
AF387845 (233 aa/232 aa)		 98 99 99 Protein motifs   3-way alignment multiple-way alignment 1 aa deletion;
C21orf61   Homo sapiens C21orf61 short form mRNA, complete cds 1 AF454915 AF454916 Available data + 30324552 30345021 20470 C21orf61 1 Available data 32039961 32060461 20501 + RP43-046M07_IMB 1110025G12Rik
BC027543 		2-way alignments AF454915 (172 aa/172 aa)
AF454916 (113 aa/113 aa)		 98 98.5 98 Protein motifs     multiple-way alignment  
C21orf108 KIAA0539 human mRNA for KIAA0539 protein 1 AB011111 AF231919 Available data - 30343758 30425578 81821 C21orf108 1 Available data 32059195 32140824 81630 - PTB-126B09_IMB, PTB-375M11_IMB, RP43-046M07_IMB 5730405K23Rik
AK017495 		2-way alignments AB011111 (2046 aa/2046 aa)
AF231919 (2248 aa/2248 aa)		 98 98 98 Protein motifs gtaac..tgcag/gtaac..tgtag 3-way alignment multiple-way alignment  
C21orf119 PRED84 hypothetical protein MGC14136 (MGC14136), mRNA 1 NM_032910 Available data + 30425867 30426697 831 C21orf119 1 Available data 32141078 32141899 822 + PTB-375M11_IMB PTB-126B09_IMB   2-way alignments NM_032910 (61 aa/61 aa) 98 97 93 Protein motifs        
C21orf63 PRED34 Homo sapiens C21orf63 isoform B rotein (C21orf63) mRNA, complete cds 1 AF358258 AY040087 Available data + 30445590 30547928 102339 C21orf63 1 Available data 32160920 32262694 101775 + PTB-126B09_IMB, PTB-375M11_IMB Full length cDNA
AK016443 		2-way alignments AF358258 (441 aa/441 aa)
AY040087 (70 aa/70 aa)		 99 99 98 Protein motifs   3-way alignment multiple-way alignment  
C21orf47   unspliced partial mRNA 3 unspliced EST H51284 Available data - 30581814 30582230 417 C21orf47 3 Available data 32296592 32297008 417 - PTB-126B09_IMB   2-way alignments H51284 (50 aa/50 aa) 99 98 95 Protein motifs        
C21orf77   unknown function 1 AK001794 BC027970 Available data - 30604977 30609029 4053 C21orf77 1 Available data 32320875 32324927 4053 - PTB-126B09_IMB   2-way alignments AK001794 (126 aa/126 aa)
BC027970 (126 aa/126 aa)		 98 97 96 Protein motifs        
TCP10L PRED77 Homo sapiens cDNA FLJ25349 fis, clone TST01443 1 AF115967 AK058078 BC022024 Available data - 30609290 30618271 8982 TCP10L 1 Available data 32325189 32333830 8642 - PTB-126B09_IMB   2-way alignments AF115967 (215 aa/217 aa)
AK058078 (215 aa/217 aa)
BC022024 (215 aa/217 aa)		 98 97 91 Protein motifs gtgac..ttcag/gtaaa..ttcag     Complex change;
C21orf59 TCP10L gene similar to TCP10, spliced ESTs AA465232/T18865 1 AF282851 AK000474 AK055328 BC000709 Available data - 30634523 30645341 10819 C21orf59 1 Available data 32350402 32362384 11983 - RP43-012J05_MOLGEN Full length cDNA
AK018510 		2-way alignments AF282851 (290 aa/290 aa)
AK000474 (138 aa/138 aa)
AK055328 (245 aa/245 aa)
BC000709 (290 aa/290 aa)		 98 98.75 98.75 Protein motifs cgcgg..gtacc/cgcgg..gtacc 3-way alignment multiple-way alignment  
OR7E92P   pseudogene for Y10529 4     + 30654005 30654833 829 OR7E92P             genomic gap                      
SYNJ1   synaptojanin-1, polyphosphoinositide phosphatase 1 AF009040 Available data - 30663728 30759658 95931 SYNJ1 1 Available data 32373840 32468679 94840 - RP43-012J05_MOLGEN   2-way alignments AF009040 (1573 aa/1575 aa) 99 99 99 Protein motifs gtaaa..ttaag/gtaaa..tttag 3-way alignment multiple-way alignment  
C21orf66 GCFC human GC-rich sequence DNA-binding factor candidate 1 AF231920 AY033903 AY033905 AY033906 BC030539 HSA279080 HSA279081 AF153208 AY033904 Available data - 30767559 30804531 36973 C21orf66 1 Available data 32476590 32513504 36915 - PTB-034G05_MOLGEN, RP43-012J05_MOLGEN Full length cDNA
AK011477 		2-way alignments AF153208 (247 aa/250 aa)
AF231920 (786 aa/786 aa)
AY033903 (917 aa/917 aa)
AY033904 (815 aa/816 aa)
AY033905 (469 aa/469 aa)
AY033906 (511 aa/511 aa)
BC030539 (398 aa/398 aa)
HSA279080 (917 aa/917 aa)
HSA279081 (511 aa/511 aa)		 99 99 99 Protein motifs gtacg..tctag/gtaag..tctag gtaaa..gggaa/gtaaa..gggaa 3-way alignment multiple-way alignment Stop-codon change (AF153208 AY033904);
C21orf49   spliced partial mRNA 2 spliced ESTs T19019 AA361369 AV655412 Available data + 30804839 30831717 26879 C21orf49 2 Available data 32513690 32540608 26919 + PTB-034G05_MOLGEN   2-way alignments AA361369 (28 aa/28 aa)
AV655412 (60 aa/60 aa)
T19019 (45 aa/45 aa)		 97.83333333 98 98 Protein motifs gtagg..ttcag/gtgga..ttcag      
C21orf120 PRED81 clone MGC:10954 IMAGE:3632392, mRNA, complete cds 1 BC004959 Available data - 30823412 30823905 494 C21orf120 ¶§ 1 Available data 32532274 32532767 494 - PTB-034G05_MOLGEN   2-way alignments BC004959 (21 aa/21 aa) 98 100 100 Protein motifs        
C21orf62   unknown function 1 AF231922 Available data - 30826303 30846386 20084 C21orf62 1 Available data 32535166 32555240 20075 - PTB-034G05_MOLGEN Full length cDNA
AK016554 		2-way alignments AF231922 (247 aa/219 aa) 99 98 90 Protein motifs   3-way alignment multiple-way alignment Stop-codon change;
PRED36   exon prediction only 3   Available data + 30846342 30852112 5771 PRED36 3 Available data 32555196 32560969 5774 + PTB-034G05_MOLGEN   2-way alignments S12-model2-riken (92 aa/92 aa) 99 99 98 Protein motifs        
OLIG2 PRKCBP2, RACK17 human protein kinase C-binding protein RACK17 1 AF221520 U48250 Available data + 31058720 31061928 3209 OLIG2 1 Available data 32769200 32772411 3212 + RP43-040C07_MOLGEN, RP43-043L10_MOLGEN Olig2
NM_016967 		2-way alignments AF221520 (323 aa/323 aa)
U48250 (321 aa/321 aa)		 98 99 99.5 Protein motifs   3-way alignment multiple-way alignment  
OLIG1 OLIGO1 homolog to a Mus musculus mRNA, Oligo1 bHLH protein (AB038696) 1 BC026989 Available data + 31102893 31105153 2261 OLIG1 1 Available data 32813308 32815580 2273 + RP43-040C07_MOLGEN Olig1
AB038696 		2-way alignments AB038696 (263 aa/263 aa)
BC026989 (255 aa/256 aa)		 98.5 98 98 Protein motifs   3-way alignment multiple-way alignment  
C21orf54   spliced partial mRNA 2 spliced ESTs AA934973 AA400147 AA400173 AA868122 Available data - 31198203 31202921 4719 C21orf54 2 Available data 32907131 32911461 4331 - PTB-026G12_MOLGEN, RP43-034B14_MOLGEN   2-way alignments AA400147 (88 aa/88 aa)
AA400173 (108 aa/- aa)
AA868122 (96 aa/96 aa)
AA934973 (95 aa/95 aa)		 98 98 96 Protein motifs gtgaa..tccag/gtgaa..tccgg      
MGC10198
chr.4		   hypothetical protein   NM_152682           FAM28ALK1 3 Available data 32934790 32937332 2543 + PTB-026G12_MOLGEN, RP43-034B14_MOLGEN                      
IFNAR2 IFNARB human interferon alpha/beta receptor 1 X77722 A45964 L41942 L41944 X89772 Available data + 31262706 31297257 34552 IFNAR2 1 Available data 32973996 33008539 34544 + RP43-034B14_MOLGEN, PTB-026G12_MOLGEN, PTB-196A08_MOLGEN Ifnar2
NM_010509 		2-way alignments A45964 (331 aa/331 aa)
L41942 (515 aa/516 aa)
L41944 (331 aa/331 aa)
X77722 (331 aa/331 aa)
X89772 (515 aa/516 aa)		 98.4 99 98.4 Protein motifs gtaac..tgcag/gtaac..tgcaa gcaag..aacag/gtaag..aacag gtacg..tcaag/gtatg..tcaag 3-way alignment   1 aa insertion (L41942, X89772);
IL10RB CRFB4, Hs.46437 human transmembrane receptor protein; cytokine receptor 1 BC001903 Z17227 Available data + 31299113 31329947 30835 IL10RB 1 Available data 33010389 33038158 27770 + PTB-073G05_MOLGEN, PTB-196A08_MOLGEN Il10rb
NM_008349 		2-way alignments BC001903 (325 aa/325 aa)
Z17227 (325 aa/325 aa)		 98 99 99 Protein motifs   3-way alignment multiple-way alignment  
IFNAR1 IFNAR, IFRC human interferon-alpha receptor (HuIFN-alpha-Rec) 1 A26593 A26595 A32389 A32391 BC021825 J03171 Available data + 31357709 31389283 31575 IFNAR1 1 Available data 33064398 33096517 32120 + PTB-073G05_MOLGEN, PTB-196A08_MOLGEN Ifnar
NM_010508 		2-way alignments A26593 (431 aa/431 aa)
A26595 (557 aa/558 aa)
A32391 (557 aa/558 aa)
BC021825 (557 aa/558 aa)
J03171 (557 aa/558 aa)		 98.66666667 99 99 Protein motifs   3-way alignment multiple-way alignment 1 aa insertion;
USF1P USF1_XENBO_967 upstream transcription factor 1 pseudogene 4     + 31367346 31367834 489 USF1P 4 Available data 33074623 33075111 498 + PTB-196A08_MOLGEN, PTB-073G05_MOLGEN                      
IFNGR2 IFGR2, IFNGT1 interferon-gamma receptor beta chain precursor 1 BC003624 U05875 U05877 Available data + 31435629 31470250 34622 IFNGR2 1 Available data 33141170 33175717 34548 + PTB-073G05_MOLGEN, PTB-196A08_MOLGEN, PTB-451A22_MOLGEN, RP43-091K15_RIKEN Ifngr2
NM_008338 		2-way alignments BC003624 (337 aa/337 aa)
U05875 (337 aa/337 aa)
U05877 (337 aa/337 aa)		 98.66666667 99 98 Protein motifs   3-way alignment multiple-way alignment  
C21orf4   chromosome 21 open reading frame 4 (Interferon receptor cluster) 1 AF045606 AF086280 BC000569 Available data - 31482939 31512678 29740 C21orf4 ¶§ 1 Available data 33188822 33228105 39284 - PTB-073G05_MOLGEN, PTB-451A22_MOLGEN, RP43-091K15_RIKEN Full length cDNA
AK020977 		2-way alignments AF045606 (158 aa/158 aa)
AF086280 (158 aa/158 aa)
BC000569 (158 aa/158 aa)		 99.33333333 100 100 Protein motifs   3-way alignment multiple-way alignment  
RPS5L   homolog to a Homo sapiens ribosomal protein S5 mRNA, complete cds (U14970) 3   Available data - 31514268 31514965 698 RPS5L 3 Available data 33229715 33230412 698 - PTB-451A22_MOLGEN, PTB-128M13_CHGC, RP43-091K15_RIKEN   2-way alignments U14970 (177 aa/177 aa) 98 98 97 Protein motifs        
C21orf55 C21orf78 Homo sapiens C21orf55 protein (C21orf55) mRNA, complete cds 1 AF462153 BC029509 Available data - 31518264 31524450 6187 C21orf55 1 Available data 33233718 33239916 6199 - PTB-451A22_MOLGEN, PTB-128M13_CHGC, RP43-091K15_RIKEN ORF28
BC005604		 2-way alignments AF462153 (388 aa/388 aa)
AK000468 (388 aa/388 aa)
BC029509 (388 aa/388 aa)		 99 99 98 Protein motifs gtacg..tatag/gtatg..tatag tgtcg..cactc/tgtcg..cactc 3-way alignment multiple-way alignment  
GART GARS, PGFT, PRGS phosphoribosylglycinamide formyltransferase, EC 2.1.2.2. 1 X54199 D32051 Available data - 31536693 31574832 38140 GART ¦ 1 Available data 33252505 33289915 37411 - PTB-128M13_CHGC, RP43-091K15_RIKEN Gart
NM_010256 		2-way alignments D32051 (433 aa/433 aa)
X54199 (1010 aa/1010 aa)		 99 99 98.5 Protein motifs   3-way alignment multiple-way alignment  
BTF3P3 BTF3_HUMAN_89 basic transcription factor 3, pseudogene 3 4     - 31551227 31551844 618 BTF3P3 4 Available data 33266202 33266819 618 - PTB-128M13_CHGC, RP43-091K15_RIKEN                      
SON C21orf50, SON3, DBP-5 SON DNA-binding protein, KIAA1019 1 AF380179 AF380180 AF380181 AF380183 AF380184 AY026895 Available data + 31575777 31610214 34438 SON ¦ 1 Available data 33290870 33325343 34474 + PTB-128M13_CHGC, RP43-091K15_RIKEN Son
NM_019973 		2-way alignments AF380179 (2140 aa/2140 aa)
AF380180 (2303 aa/2303 aa)
AF380181 (2325 aa/2325 aa)
AF380183 (2108 aa/2108 aa)
AF380184 (2426 aa/2426 aa)
AY026895 (738 aa/738 aa)		 99 99 99 Protein motifs gtagc..ctgca/gtagc..ctgca acgag..taaag/acgag..taaag atgct..cccag/atgct..cccag 3-way alignment multiple-way alignment  
DONSON   Homo sapiens B17 long form mRNA, complete cds 1 AF232674 AK001274 Available data - 31608210 31628198 19989 DONSON § 1 Available data 33323329 33343307 19979 - PTB-128M13_CHGC ORF60
AF193608 		2-way alignments AF232674 (199 aa/199 aa)
AK001274 (326 aa/326 aa)		 99 99 100 Protein motifs gtaag..cacag/gtatg..cacag caagt..acagg/caagt..acaag 3-way alignment multiple-way alignment  
CRYZL1 4P11, C21orf60 quinone oxidoreductase homolog-1 1 AF029689 AF098798 AK001293 Available data - 31622200 31674480 52281 CRYZL1 § 1 Available data 33337280 33389601 52322 - PTB-128M13_CHGC, PTB-301D17_CHGC Full length cDNA
AK010433
AK008846 		2-way alignments AF029689 (349 aa/349 aa)
AF098798 (349 aa/349 aa)
AK001293 (322 aa/322 aa)		 99 99 100 Protein motifs gtatg..gatag/gtatg..ggtag atatc..gctac/atatc..gctac atatc..tccag/atatc..tccag 3-way alignment multiple-way alignment  
ITSN1 ITSN, SH3D1A, SH3P17 human intersectin-SH3 domain-containing protein SH3P17 1 AF064243 AF064244 AF114487 AF114488 U61166 Available data + 31675211 31923005 247795 ITSN1 ¦ 1 Available data 33390335 33637683 247349 + PTB-086H16_CHGC, PTB-128M13_CHGC, PTB-301D17_CHGC, RP43-082O07_CHGC Itsn
NM_010587 		2-way alignments AF064243 (1220 aa/1220 aa)
AF064244 (1721 aa/1721 aa)
AF114487 (1721 aa/1721 aa)
AF114488 (1220 aa/1220 aa)
U61166 (520 aa/520 aa)		 99 99 99.2 Protein motifs   3-way alignment multiple-way alignment  
ATP5O OSCP human ATP synthase OSCP subunit, oligomycin sensitivity conferring protein 1 AF088071 BC021233 BC022865 X83218 Available data - 31936184 31948515 12332 ATP5O §¦ 1 Available data 33650857 33663193 12337 - PTB-008N13_CHGC, RP43-082O07_CHGC Atp5o
AK005309 		2-way alignments AF088071 (175 aa/175 aa)
BC021233 (213 aa/213 aa)
BC022865 (213 aa/213 aa)
X83218 (213 aa/213 aa)		 99 99 100 Protein motifs   3-way alignment multiple-way alignment  
SLC5A3   human solute carrier family 5, member 3, Sodium/myo-inositol cotransporter 1 AF027153 Available data + 32106170 32136905 30736 SLC5A3 1 Available data 33820725 33851458 30734 + RP43-074L01_CHGC Slc5a3
AF220915 		2-way alignments AF027153 (718 aa/718 aa) 98 99 99 Protein motifs gctgc..ctcca/gctgc..ctcca 3-way alignment    
MRPS6   mitochondrial ribosomal protein S6 1 AB049942 AK096374 AY061855 Available data + 32106250 32175761 69512 MRPS6 § 1 Available data 33820805 33890239 69435 + RP43-074L01_CHGC Mrps6
XM_128338 		2-way alignments AB049942 (166 aa/166 aa)
AK096374 (96 aa/125 aa)
AY061855 (125 aa/125 aa)		 98.66666667 99.66666667 100 Protein motifs   3-way alignment multiple-way alignment  
RPS5P2   pseudogene for U14970 4     - 32168074 32168844 771 RPS5P2 4 Available data 33882600 33883366 767 - RP43-074L01_CHGC                      
PRED37   exon prediction supported by unspliced ESTs 3 unspliced EST AA613597 Available data - 32194347 32194774 428 PRED37 3 Available data 33908823 33909250 428 - RP43-074L01_CHGC   2-way alignments AA613597 (36 aa/36 aa) 99 99 97 Protein motifs        
C21orf82   chromosome 21 open reading frame 82 (C21orf82), mRNA 1 AF426258 Available data + 32213405 32215973 2569 C21orf82 1 Available data 33928447 33931012 2566 + PTB-037I20_CHGC   2-way alignments AF426258 (64 aa/64 aa)
NM_153751 (64 aa/64 aa)		 99 98 96 Protein motifs        
KCNE2 MirP1 human minK-related peptide 1, potassium channel subunit, MiRP1 1 AF071002 AF302095 Available data + 32396750 32403871 7122 KCNE2 1 Available data 34112622 34118118 5497 + RP43-084B17_CHGC Kcne2
AK008619 		2-way alignments AF071002 (123 aa/123 aa)
AF302095 (123 aa/123 aa)		 98.5 99 99 Protein motifs   3-way alignment multiple-way alignment  
C21orf51   Homo sapiens C21ORF51 (C21ORF51) mRNA, complete cds 1 AK057880 AY033902 AY081143 AY081144 BC015596 Available data + 32408226 32435495 27270 C21orf51 1 Available data 34122481 34149739 27259 + PTB-016G16_CHGC, RP43-084B17_CHGC Full length cDNA
AK004538 		2-way alignments AK057880 (58 aa/58 aa)
AY033902 (58 aa/58 aa)
AY081143 (68 aa/68 aa)
AY081144 (58 aa/58 aa)
BC015596 (58 aa/58 aa)		 97.8 98.8 99.6 Protein motifs   3-way alignment multiple-way alignment  
PRED38   exon prediction only 3   Available data + 32451497 32476474 24978 PRED38 3 Available data 34165938 34194375 28438 + PTB-016G16_CHGC, RP43-031M16_CHGC   2-way alignments   97.5              
KCNE1 ISK human cardiac delayed rectifier potassium channel protein 1 L28168 M26685 Available data - 32481952 32482387 436 KCNE1 1 Available data 34199881 34200316 436 - RP43-031M16_CHGC Kcne1
NM_008424 		2-way alignments AY050512 (129 aa/129 aa)
L28168 (132 aa/132 aa)
M26685 (132 aa/132 aa)		 97 97 96 Protein motifs   3-way alignment multiple-way alignment  
DSCR1 DSC1 human Down syndrome candidate region protein, proline-rich protein 1 U28833 AY007090 U85265 U85266 U85267 Available data - 32549209 32647596 98388 DSCR1 1 Available data 34266875 34365470 98596 - PTB-015O01_CHGC, RP43-031M16_CHGC Dscr1
AF282255 		2-way alignments AY007090 (66 aa/66 aa)
U28833 (171 aa/171 aa)
U85265 (117 aa/117 aa)
U85266 (197 aa/197 aa)
U85267 (197 aa/197 aa)		 99 99 98.6 Protein motifs   3-way alignment multiple-way alignment  
PRED39   exon prediction supported by unspliced ESTs 3 unspliced ESTs AF146693 AI003386 Available data + 32610242 32611038 797 PRED39 3 Available data 34328023 34328822 800 + PTB-015O01_CHGC, RP43-031M16_CHGC   2-way alignments AF146693 (93 aa/60 aa)
AI003386 (93 aa/57 aa)		 97 98 97 Protein motifs        
CLIC6 CLIC1L Homo sapiens chloride intracellular channel 6 (CLIC6) mRNA 1 AF426169 AK092733 Available data + 32740099 32750954 10856 CLIC6 § 1 Available data 34457525 34468337 10813 + PTB-125M11_CHGC Clic6
NM_172469 		2-way alignments AF426169 (138 aa/138 aa)
AK092733 (175 aa/175 aa)		 98.5 99 100 Protein motifs   3-way alignment multiple-way alignment  
C21orf52   spliced partial mRNA 2 spliced ESTs AI761253 BF511060 Available data + 32756541 32766776 10236 C21orf52 2 Available data 34473920 34484185 10266 + PTB-125M11_CHGC   2-way alignments   98.5 100 100 Protein motifs        
RUNX1 PEBP2-ALPHA_B, AML1, CBF-ALPHA_B, CBFA2, PEA2-ALPHA_B acute myeloid leukemia 1 protein (oncogene AML-1), core-binding factor, alpha subunit 1 D43967 D43968 X79549 D10570 E05037 M83215 D13979 Available data - 32820541 32921423 100883 RUNX1 § 1 Available data 34537967 34639009 101043 - PTB-117K17_CHGC, PTB-125M11_CHGC Runx1
NM_009821 		2-way alignments D10570 (250 aa/250 aa)
D13979 (177 aa/177 aa)
D43967 (250 aa/250 aa)
D43968 (453 aa/453 aa)
E05037 (250 aa/250 aa)
M83215 (250 aa/250 aa)
X79549 (472 aa/472 aa)		 98.14285714 99 100 Protein motifs cctcc..cgcgc/cctcc..cgcgc 3-way alignment multiple-way alignment  
C21orf96 FLJ20856 unknown function 1 AK024509 Available data - 33070655 33072159 1505 C21orf96 1 Available data 34789319 34791032 1714 - PTB-063M23_CHGC   2-way alignments AK024509 (131 aa/115 aa) 98 97 96 Protein motifs        
RPL34P3   pseudogene with similarity to ribosomal protein L34 4     - 33504813 33505189 377 RPL34P3 4 Available data 35224179 35224555 377 - RP43-025M10_CHGC                      
RPS20P1 RPS20P pseudogene with similarity to ribosomal protein S20 4     - 33757443 33757900 458 RPS20P1 4 Available data 35471556 35472013 458 - RP43-091A22_CHGC                      
PPP1R2P2   protein phosphatase inhibitor 2 pseudogene 4     + 33919924 33922972 3049 PPP1R2P2 4 Available data 35633693 35636751 3059 + PTB-024F05_CHGC                      
MTND2P1 NU2M_FELCA_107 NADH dehydrogenase 2 pseudogene 1 4     - 33923960 33924885 926 MTND2P1 4 Available data 35637739 35638668 930 - PTB-024F05_CHGC                      
RPL23AP3   ribosomal protein L23A pseudogene 4     - 34048776 34049291 516 RPL23AP3 4 Available data 35761186 35761700 515 - PTB-047A24_CHGC                      
C21orf18   Homo sapiens C21orf18 isoform B protein (C21orf18) mRNA, complete cds 1 AF391112 AK001660 AK095215 BC036556 NM_017438 Available data - 34067276 34093226 25951 C21orf18 1 Available data 35779661 35805506 25846 - PTB-047A24_CHGC ORF21 2-way alignments AF391112 (129 aa/129 aa)
AK001660 (440 aa/440 aa)
AK095215 (440 aa/440 aa)
NM_017438 (440 aa/440 aa)
BC036556 (416 aa/378 aa)		 98.8 99 99 Protein motifs gtatg..gatag/gtacg..gatag 3-way alignment multiple-way alignment  
RIMKLP   pseudogene for KIAA1238 protein, similar to bacterial ribosomal S6 modification protein 4     + 34082894 34147011 64118 RIMKLP 4 Available data 35795234 35859140 63907 + PTB-047A24_CHGC                      
C21orf27   spliced partial mRNA 2 spliced EST AI685287 Available data - 34093166 34097142 3977 C21orf27 2 Available data 35805446 35809412 3967 - PTB-047A24_CHGC   2-way alignments   97              
CBR1 CBR, CBR-1, CRN carbonyl reductase (NADPH) 1, EC 1.1.1.184. 1 BC002511 BC015640 J04056 M62420 Available data + 34102573 34105902 3330 CBR1 §¦ 1 Available data 35814879 35818195 3317 + PTB-047A24_CHGC Cbr1
U31966 		2-way alignments AB059654 (277 aa/277 aa)
BC002511 (277 aa/277 aa)
BC015640 (277 aa/277 aa)
J04056 (277 aa/277 aa)
M62420 (120 aa/120 aa)		 98 98.8 100 Protein motifs   3-way alignment multiple-way alignment  
C21orf19   Homo sapiens C21orf19-like protein mRNA, complete cds 1 AF363446 AK057760 BC018733 Available data + 34162841 34164664 1824 C21orf19 4 Available data 35874936 35876762 1827 + PTB-047A24_CHGC                      
RPS9P1 RPS9P ribosomal protein S9 pseudogene 4     + 34165153 34165854 702 RPS9P1 4 Available data 35877248 35877949 702 + PTB-047A24_CHGC                      
CBR3 CBR2 carbonyl reductase (NADPH) 3, EC 1.1.1.184. 1 AB004854 BC018733 Available data + 34167838 34179296 11459 CBR3 1 Available data 35879926 35891170 11245 + PTB-047A24_CHGC Full length cDNA
AK028150 		2-way alignments AB004854 (277 aa/277 aa)
BC002812 (277 aa/277 aa)		 99 99 99 Protein motifs   3-way alignment multiple-way alignment  
C21orf5   mRNA for KIAA0933 protein 1 AJ237839 AB023150 Available data + 34197269 34326611 129343 C21orf5 1 Available data 35908128 36037385 129258 + PTB-047A24_CHGC, PTB-155H17_CHGC, PTB-237O15_CHGC 2610510B01Rik
AK012087		 2-way alignments AJ237839 (2298 aa/2298 aa) 99 99 99 Protein motifs gtgag..ttcag/gtgag..tccag 3-way alignment multiple-way alignment  
RPL3P1 RPL3P ribosomal protein L3 pseudogene 4     - 34201629 34202923 1295 RPL3P1 4 Available data 35912485 35913778 1294 - PTB-047A24_CHGC                      
RPS26P1 RPS26P ribosomal protein S26 pseudogene 4     - 34262397 34395425 133029 RPS26P1 4 Available data 35972942 36106216 133275 - PTB-155H17_CHGC, PTB-237O15_CHGC                      
SFRS9P1   splicing factor pseudogene 4     - 34327565 34328214 650 SFRS9P1 4 Available data 36038339 36038990 652 - PTB-155H17_CHGC                      
ZCWCC3 KIAA0136 human mRNA for KIAA0136 protein 1 D50926 Available data + 34352964 34409372 56409 ZCWCC3 1 Available data 36063682 36120108 56427 + PTB-155H17_CHGC Kiaa0136
BC026506 		2-way alignments D50926 (950 aa/950 aa) 99 99 99 Protein motifs catat..atata/catat..atata 3-way alignment multiple-way alignment  
CHAF1B CAF1A, CAF1A-LSB human chromatin assembly factor-I p60 subunit 1 BC021218 U20980 Available data + 34418800 34449561 30762 CHAF1B 1 Available data 36129527 36160011 30485 + PTB-155H17_CHGC, RP43-139K21_CHGC Chaf1b
AK011243 		2-way alignments BC021218 (559 aa/559 aa)
U20980 (559 aa/559 aa)		 99 99 99 Protein motifs   3-way alignment multiple-way alignment  
ATP5J2LP   F1Fo-ATPase synthase f subunit pseudogene 4     - 34421606 34421887 282 ATP5J2LP 4 Available data 36132358 36132639 282 - PTB-155H17_CHGC                      
CLDN14 Claudin-14 human CLDN14 gene 1 AF314090 BC012126 Available data - 34493355 34512824 19470 CLDN14 § 1 Available data 36203845 36223345 19501 - RP43-139K21_CHGC Cldn14
AF314089 		2-way alignments AF314090 (239 aa/239 aa)
BC012126 (239 aa/239 aa)		 99 99 100 Protein motifs   3-way alignment multiple-way alignment  
PSMD15 PSMD4 proteasome 26S subunit gene 1 AF050199 Available data + 34518601 34520494 1894 PSMD15 1 Available data 36229278 36231184 1907 + RP43-139K21_CHGC Psmd4
NM_008951 		2-way alignments AF050199 (218 aa/ 138 aa) 98         3-way alignment   Stop-codon change;
SIM2 HSSIM2 human transcription factor SIM2, homolog of the Drosophila single-minded gene SIM1 1 U80456 U80457 Available data + 34732410 34782654 50245 SIM2 1 Available data 36433889 36484122 50234 + RP43-027E03_RIKEN Sim2
D64135 		2-way alignments U80456 (667 aa/667 aa)
U80457 (570 aa/570 aa)		 98.5 99 98.5 Protein motifs   3-way alignment multiple-way alignment  
HLCS MCD holocarboxylase synthetase, EC 6.3.4. 1 D87328 D23672 Available data - 34783929 35022972 239044 HLCS 1 Available data 36485392 36701134 215743 - PTB-141G07_RIKEN, RP43-001G01_RIKEN, RP43-027E03_RIKEN Hlcs
AB066227 		2-way alignments D23672 (726 aa/726 aa)
D87328 (726 aa/726 aa)		 99 99 99 Protein motifs gtaac..ggcag/gtaag..cgcag 3-way alignment multiple-way alignment  
DSCR6   unknown function 1 AB037158 AB037159 Available data + 35038886 35052398 13513 DSCR6 1 Available data 36740942 36753322 12381 + RP43-001G01_RIKEN, RP43-007D11_RIKEN Dscr6
AB063284 		2-way alignments AB037158 (190 aa/163 aa)
AB037159 (106 aa/77 aa)		 98 99 99 Protein motifs gtgag..tccag/ctgag..tccag 3-way alignment multiple-way alignment Stop-codon change;
DSCR5 DCRC human Down syndrome critical region protein C 1 AB035742 AB035743 AB035744 AB035745 AB037162 AB037163 AB037164 AF216305 BC011007 Available data - 35098089 35105830 7742 DSCR5 § 1 Available data 36800208 36807924 7717 - RP43-007D11_RIKEN Dcrc
NM_019543 		2-way alignments AB035742 (134 aa/134 aa)
AB035743 (134 aa/134 aa)
AB035744 (134 aa/134 aa)
AB035745 (158 aa/19 aa)
AB037162 (134 aa/134 aa)
AB037163 (158 aa/19 aa)
AB037164 (108 aa/108 aa)
AF216305 (108 aa/108 aa)
BC011007 (134 aa/134 aa)		 99 99 100 Protein motifs   3-way alignment multiple-way alignment Stop-codon change (AB035745, AB037163);
TTC3 TPRD tetratricopeptide repeat protein (TPR repeat protein D) 1 D84294 D83077 D84295 D84296 Available data + 35115683 35235842 120160 TTC3 1 Available data 36817767 36937577 119811 + RP43-007D11_RIKEN Ttc3
AB008516 		2-way alignments D83077 (2025 aa/2025 aa)
D84294 (2025 aa/2025 aa)
D84295 (1792 aa/1792 aa)
D84296 (1715 aa/1715 aa)		 99 99 98 Protein motifs gtaag..cttag/gtcag..cctag gtaat..tttag/gtgat..tttag gtatt..ttcag/gtaat..ttcag aggca..tttgt/aggca..tttgt 3-way alignment multiple-way alignment  
DSCR9   Down syndrome critical region gene 9 (DSCR9), mRNA 1 AB066100 Available data + 35253063 35254472 1410 DSCR9 1 Available data 36954684 36956093 1410 + RP43-007D11_RIKEN   2-way alignments AB066100 (149 aa/149 aa)
NM_148675 (149 aa/149 aa)		 99 99 98 Protein motifs        
DSCR3 DCRA Down syndrome critical region protein A 1 D87343 Available data - 35256162 35300269 44108 DSCR3 1 Available data 36957801 37002012 44212 - RP43-007D11_RIKEN, RP43-058I16_RIKEN Dcra
NM_007834 		2-way alignments D87343 (297 aa/297 aa) 98 99 99 Protein motifs   3-way alignment multiple-way alignment  
DYRK1A HP86, DYRK, MNB, MNBH dual-specificity tyrosine-Y-phosphorylation regulated kinase, EC 2.7.1. 1 D85759 D86550 U52373 Available data + 35451643 35547913 96271 DYRK1A § 1 Available data 37153160 37249613 96454 + PTB-105K10_RIKEN, PTB-109N23_RIKEN, RP43-069E18_RIKEN Dyrk1a
U58497 		2-way alignments D85759 (754 aa/754 aa)
D86550 (754 aa/754 aa)
U52373 (763 aa/763 aa)		 99 99 100 Protein motifs gtaag..ttcag/gtgag..ttcag gtaaa..tacag/gtaaa..cacag 3-way alignment multiple-way alignment  
KCNJ6 GIRK2, KCNJ7, KATP2, KIR3.2 human G protein coupled inward rectifier potassium channel 2 (hiGIRK2) 1 U24660 D87327 L78480 U52153 Available data - 35657222 35949135 291914 KCNJ6 § 1 Available data 37358069 37652991 294923 - PTB-069P04_RIKEN, PTB-109N23_RIKEN, PTB-147B08_RIKEN Kcnj6
NM_010606 		2-way alignments D87327 (423 aa/423 aa)
L78480 (423 aa/423 aa)
U24660 (423 aa/423 aa)
U52153 (423 aa/423 aa)		 99 99 100 Protein motifs   3-way alignment multiple-way alignment  
DSCR4 DCRB Down syndrome critical region protein B 1 AB000099 Available data - 36086752 36153890 67139 DSCR4 § 1 Available data 37790271 37856616 66346 - PTB-099K02_RIKEN, PTB-128A24_RIKEN   2-way alignments AB000099 (118 aa/118 aa) 98 99 100 Protein motifs        
DSCR8 C21orf65 cDNA selection product, DCR1-24.0 1 AF321193 AJ001904 HSA306840 Available data + 36154015 36189047 35033 DSCR8 1 Available data 37856741 37891758 35018 + PTB-099K02_RIKEN, PTB-128A24_RIKEN   2-way alignments AF321193 (91 aa/91 aa)
AJ001904 (91 aa/91 aa)
HSA306840 (70 aa/70 aa)		 98.66666667 99.66666667 99.33333333 Protein motifs atgag..cctag/atgag..cctag      
DSCR10   Down syndrome critical region gene 10 (DSCR10), mRNA 1 NM_148676 Available data + 36238686 36241174 2489 DSCR10 1 Available data 37935146 37937220 2075 + PTB-099K02_RIKEN   2-way alignments NM_148676 (87 aa/87 aa) 98 98 97 Protein motifs        
KCNJ15 KCNJ14, KCNJ14-PEN, Kir4.2, Kir1.3 inwardly rectifing potassium channel Kir4.2. 1 BC013327 D87291 U73191 Y10745 Available data + 36289100 36333848 44749 KCNJ15 § 1 Available data 37984677 38031508 46832 + PTB-099K02_RIKEN Kcnj15
NM_019664 		2-way alignments BC013327 (375 aa/375 aa)
D87291 (375 aa/375 aa)
U73191 (375 aa/375 aa)
Y10745 (375 aa/375 aa)		 99 99 100 Protein motifs   3-way alignment    
ERG ERG2 transcriptional regulator ERG (transforming protein ERG) 1 M17254 M21535 Available data - 36413928 36617305 203378 ERG § 1 Available data 38106437 38310418 203982 - PTB-091C04_IMB, PTB-302M06_IMB, PTB-042K04_NIG, RP43-001C14_RIKEN Erg
AB073080 		2-way alignments M17254 (462 aa/462 aa)
M21535 (363 aa/363 aa)		 99 99 100 Protein motifs   3-way alignment multiple-way alignment  
C21orf24   spliced partial mRNA 2 spliced ESTs AI492145 BE973840 BF063573 Available data - 36771261 36784617 13357 C21orf24 2 Available data 38462082 38475624 13543 - PTB-091C04_IMB, PTB-058P10_NIG   2-way alignments   96.66666667 97.5 96 Protein motifs        
ETS2 ETS-2, c-ETS-2 human erythroblastosis virus oncogene homolog 2 1 AK096841 BC017040 J04102 Available data + 36837667 36856161 18495 ETS2 1 Available data 38527903 38546287 18385 + PTB-099D17_IMB, PTB-058P10_NIG Ets2
J04103 		2-way alignments AK096841 (609 aa/613 aa)
BC017040 (469 aa/469 aa)
J04102 (469 aa/469 aa)		 98.33 99 99.67 Protein motifs   3-way alignment multiple-way alignment 4 aa insertion (AK096841);
C21orf104   hypothetical protein 1 AJ011409 Available data - 37055362 37056197 836 C21orf104 4 Available data 38744274 38745110 837 - PTB-099D17_IMB, PTB-187O16_IMB                      
RPL23AP12 RPL23AP5 60S ribosomal protein pseudogene 4     + 37159917 37160438 522 RPL23AP12 4 Available data 38847559 38848081 523 - PTB-270D20_GBF                      
PCBP2P1   heteronucleotide ribosomal protein pseudogene 4     - 37203155 37203945 791 PCBP2P1 4 Available data 38888812 38889603 792 - RP43-027I07_NIG, PTB-270D20_GBF                      
DSCR2 C21LRP leucine rich protein C21-LRP 1 AJ006291 AK001455 BC010424 BC011755 BC012809 Available data - 37207820 37215838 8019 DSCR2 1 Available data 38893478 38901497 8020 - PTB-270D20_GBF, RP43-027I07_NIG Dscr2
NM_019537 		2-way alignments AJ006291 (288 aa/288 aa)
AK001455 (288 aa/288 aa)
BC010424 (288 aa/288 aa)
BC011755 (288 aa/288 aa)
BC012809 (288 aa/288 aa)		 99 99 99 Protein motifs   3-way alignment multiple-way alignment  
WDR9   gene homolog to cAMP response element binding and beta-tranducin family 1 AK002177 Available data - 37218505 37344848 126344 WDR9 1 Available data 38904153 39031385 127233 - PTB-270D20_GBF, PTB-448G23_GBF, RP43-027I07_NIG, RP43-145H09_RIKEN Wdr9
XM_128387 		2-way alignments AJ292465 (2320 aa/2320 aa)
AJ292466 (2269 aa/2269 aa)
AK002177 (625 aa/625 aa)
HSA238214 (2269 aa/2269 aa)		 99 99 98.75 Protein motifs gtctg..tccag/gtttc..tccag 3-way alignment multiple-way alignment  
C21orf107 N143 human mRNA; transcriptional unit N143 1 AJ002572 Available data - 37226222 37227420 1199 C21orf107 1 Available data 38911868 38913064 1197 - PTB-270D20_GBF   2-way alignments   99              
C21orf87   chromosome 21 open reading frame 87 (C21orf87), mRNA 1 NM_153455 Available data - 37345219 37346218 1000 C21orf87 1 Available data 39031756 39032755 1000 - RP43-145H09_RIKEN PTB-448G23_GBF   2-way alignments NM_153455 (145 aa/145 aa) 97 96 90 Protein motifs        
HMGN1 HMG14 human non-histone chromosomal protein HMG-14 1 AK056033 BC000075 BC023984 J02621 Available data - 37373573 37380319 6747 HMGN1 1 Available data 39060119 39066796 6678 - PTB-448G23_GBF, RP43-145H09_RIKEN Hmgn1
NM_008251 		2-way alignments AK056033 (168 aa/168 aa)
BC000075 (100 aa/100 aa)
BC023984 (100 aa/100 aa)
J02621 (100 aa/100 aa)		 99 99 99.5 Protein motifs gtaag..catag/gtagg..catag 3-way alignment    
WRB CHD5 tryptophan-rich protein, congenital heart disease 5 protein 1 BC012415 Y12478 Available data + 37409989 37427348 17360 WRB § 1 Available data 39099064 39116210 17147 + PTB-448G23_GBF, RP43-145H09_RIKEN Full length cDNA
AK021091 		2-way alignments BC012415 (174 aa/174 aa)
Y12478 (174 aa/174 aa)		 98 99 100 Protein motifs gtaag..tacag/gtaag..tccag 3-way alignment multiple-way alignment  
C21orf13   Homo sapiens, clone MGC:33295 IMAGE:5271223, mRNA, complete cds; myosin heavy chain and kinesin homology 1 BC031059 Available data - 37435489 37475398 39910 C21orf13 1 Available data 39124371 39164253 39883 - PTB-448G23_GBF, RP43-145H09_RIKEN   2-way alignments BC031059 (670 aa/670 aa) 99 99 98 Protein motifs gtatg..aacag/gtatg..aacag   multiple-way alignment  
SH3BGR   21-Glutamic Acid-Rich Protein (21-GARP) 1 BC006371 X93498 Available data + 37481539 37545155 63617 SH3BGR 1 Available data 39170431 39233341 62911 + PTB-448G23_GBF, PTB-126M21_GBF Sh3bgr
NM_015825 		2-way alignments BC006371 (239 aa/240 aa)
X93498 (239 aa/240 aa)		 98 98 97 Protein motifs tacaa..tatgc/tacaa..tatgc 3-way alignment multiple-way alignment  
MYL6P2 CAL2_PETHY_128 myosin, light polypeptide 6, pseudogene 2 4     + 37518144 37518342 199 MYL6P2 4 Available data 39206910 39207108 199 + PTB-126M21_GBF                      
RPS26P4 R26A_YEAST_129 ribosomal protein S26 pseudogene 4 4     - 37521121 37521563 443 RPS26P4 4 Available data 39209883 39210324 442 - PTB-126M21_GBF                      
C21orf88   chromosome 21 open reading frame 88 (C21orf88), mRNA 1 NM_153754 Available data - 37626042 37641336 15295 C21orf88 1 Available data 39315343 39330693 15351 - PTB-126M21_GBF RP43-002I19_GBF   2-way alignments NM_153754 (145 aa/145 aa) 98 97 95 Protein motifs        
B3GALT5   GlcNAc-beta-1,3-galactosyltransferase 5 1 AB020337 AF145784 AJ006078 Available data + 37686222 37691783 5562 B3GALT5 1 Available data 39375680 39381231 5552 + RP43-002I19_GBF B3galt5
AF254738 		2-way alignments AB020337 (310 aa/310 aa)
AF145784 (310 aa/310 aa)
AJ006078 (310 aa/310 aa)		 98 98 97 Protein motifs   3-way alignment multiple-way alignment  
IGSF5   putative gene, immunoglobulin superfamily 5 like 1 AK092516 Available data + 37774302 37830976 56675 IGSF5 1 Available data 39463552 39520260 56709 + PTB-060F12_NIG, RP43-002I19_GBF Full length cDNA
NM_028078 		2-way alignments AK092516 (441 aa/159 aa) 97 97 96 Protein motifs   3-way alignment multiple-way alignment Stop-codon change;
PCP4 PEP19 brain specific polypeptide PEP19 1 U52969 X93349 Available data + 37896315 37958285 61971 PCP4 ¶§¦ 1 Available data 39585520 39647218 61699 + PTB-060F12_NIG, PTB-103H04_GBF Pcp4
NM_008791 		2-way alignments BC013791 (62 aa/62 aa)
U52969 (62 aa/62 aa)
X93349 (62 aa/62 aa)		 99 100 100 Protein motifs   3-way alignment multiple-way alignment  
DSCAM CHD2-42, CHD2-52 human CHD2-52 down syndrome cell adhesion molecule 1 AF023450 AF217525 Available data - 38041797 38876030 834234 DSCAM § 1 Available data 39729669 40558836 829168 - RP43-030A20_MOLGEN, RP43-054L10_MOLGEN, PTB-080A15_MOLGEN, PTB-042G18_NIG, PTB-103H04_GBF, PTB-144O12_GBF, RP43-035C13_GBF, RP43-039B12_GBF Dscam
NM_031174 		2-way alignments AF023450 (1571 aa/1571 aa)
AF217525 (2012 aa/2012 aa)		 99 99 100 Protein motifs   3-way alignment    
C21orf130 FLJ37173, PRED42 exon prediction supported by spliced mRNA 2 spliced EST AK094492 Available data - 39153587 39181921 28335 C21orf130 2 Available data 40839826 40846396 6571 - RP43-006A20_MOLGEN   2-way alignments AK094492 (86 aa/86 aa) 98 98 97 Protein motifs        
BACE2 ASP1, CDA13 aspartyl protease Asp 1 1 AF050171 AF117892 AF178532 AF188276 AF188277 AF200192 AF200342 AF204944 AF212252 Available data + 39196693 39305486 108794 BACE2 1 Available data 40866508 40975882 109375 + PTB-028I09_MOLGEN, PTB-045O21_MOLGEN, RP43-006A20_MOLGEN Bace2
NM_019517 		2-way alignments AF050171 (518 aa/518 aa)
AF117892 (518 aa/518 aa)
AF178532 (518 aa/518 aa)
AF188276 (468 aa/468 aa)
AF188277 (396 aa/396 aa)
AF200192 (518 aa/518 aa)
AF200342 (518 aa/518 aa)
AF204944 (518 aa/518 aa)
AF212252 (439 aa/439 aa)		 99 99 99 Protein motifs   3-way alignment multiple-way alignment  
C21orf75 PRED43 spliced partial mRNA 2 spliced ESTs AI149439 AI189527 BF985338 BF998266 Available data - 39205338 39215418 10081 C21orf75 2 Available data 40875279 40885574 10296 - PTB-028I09_MOLGEN, RP43-006A20_MOLGEN   2-way alignments   97.75              
C21orf115 PRED78 Homo sapiens PP1416 mRNA, complete cds 1 AF269287 Available data - 39207467 39210380 2914 C21orf115 4 Available data 40877415 40880537 3123 - PTB-028I09_MOLGEN, RP43-006A20_MOLGEN                      
FAM3B C21orf11, PRED44 Homo sapiens putative C21orf11 isoform B protein (C21orf11) mRNA, complete cds 1 AF375989 AJ409094 Available data + 39345706 39386307 40602 FAM3B 1 Available data 41016386 41058076 41691 + PTB-045O21_MOLGEN, RP43-181I17_MOLGEN ORF9
AK018571 		2-way alignments AF375989 (235 aa/235 aa)
HSA409094 (274 aa/30 aa)		 99 99 99 Protein motifs ggaaa..ctgca/ggaaa..ctgca 3-way alignment multiple-way alignment Stop-codon change (AJ409094);
MX2   human interferon-regulated resistance GTP-binding protein MXB 1 M30818 M33883 Available data + 39390915 39437834 46920 MX2 1 Available data 41062672 41109744 47073 + PTB-045O21_MOLGEN, RP43-181I17_MOLGEN Mx2
NM_013606 		2-way alignments M30818 (715 aa/715 aa)
M33883 (687 aa/687 aa)		 99 99 98 Protein motifs   3-way alignment multiple-way alignment  
MX1 IFI-78K, IFI78 human interferon-regulated resistance GTP-binding protein MXA 1 AK093008 BC014222 BC032602 M30817 M33882 Available data + 39455119 39488106 32988 MX1 1 Available data 41128567 41161467 32901 + RP43-181I17_MOLGEN Mx1
NM_010846 		2-way alignments AK093008 (662 aa/662 aa)
BC014222 (579 aa/579 aa)
BC032602 (662 aa/662 aa)
M30817 (662 aa/662 aa)
M33882 (662 aa/662 aa)		 98 98 98 Protein motifs gtcag..tacag/gtcag..tatag gggga..tccta/gggga..tccta 3-way alignment multiple-way alignment  
TMPRSS2   transmembrane protease, serine 2, EC 3.4.21. 1 AF329454 U75329 Available data - 39493443 39537043 43601 TMPRSS2 1 Available data 41166809 41210559 43751 - RP43-181I17_MOLGEN Tmprss2
NM_015775 		2-way alignments AF329454 (492 aa/492 aa)
U75329 (492 aa/492 aa)		 99 99 97 Protein motifs   3-way alignment multiple-way alignment  
C21orf20   spliced partial mRNA 2 spliced EST AW138631 Available data - 39588012 39591850 3839 C21orf20 2 Available data 41250514 41254344 3831 - PTB-242K04_RIKEN   2-way alignments AW138631 (82 aa/82 aa) 99 99 98 Protein motifs        
C21orf21   spliced partial mRNA 2 spliced EST AA969880 Available data - 39721627 39739661 18035 C21orf21 2 Available data 41384531 41402644 18114 - CH251-010A09_RIKEN   2-way alignments   97       gtaag..caaag/ataag..caaag gtaga..tgcag/gtaga..tgcaa      
C21orf129 FLJ32835, PRED76 Homo sapiens cDNA FLJ32835 fis, clone TESTI2003255 1 AK057397 Available data - 39753845 39758100 4256 C21orf129 1 Available data 41415621 41419877 4257 - CH251-010A09_RIKEN   2-way alignments AK057397 (130 aa/130 aa) 96 97 94 Protein motifs gtgct..tccag/gtgct..tccgg gtgag..caaag/gtgag..cgaag      
C21orf22   Homo sapiens C21orf22 protein (C21orf22) mRNA, partial sequence 1 AY040089 Available data + 39758761 39759905 1145 C21orf22 1 Available data 41420538 41421676 1139 + CH251-010A09_RIKEN   2-way alignments AY040089 (85 aa/83 aa) 96 98 96 Protein motifs       2 aa deletion;
ANKRD3   putative gene, ankirin like, possible dual-specificity Ser/Thr/Tyr kinase domain 1 AB047783 AJ278016 AK027424 Available data - 39781693 39809431 27739 ANKRD3 1 Available data 41443507 41471329 27823 - CH251-010A09_RIKEN Ankrd3
AF302127 		2-way alignments AB047783 (784 aa/786 aa)
AJ278016 (784 aa/786 aa)
AK027424 (784 aa/786 aa)		 98 98 99 Protein motifs   3-way alignment multiple-way alignment 2 aa insertion;
PRDM15 ZNF298, C21orf83 PR-domain zinc finger protein 15 1 AF276513 XM_029600 Available data - 39840550 39930296 89747 PRDM15 1 Available data 41549110 41591036 41927 - PTB-315N10_RIKEN Prdm15
NM_144789 		2-way alignments                  
C21orf25   human cDNA DKFZp586F0422, AL050173 1 AL050173 Available data - 39935926 39952466 16541 C21orf25 1 Available data 41596660 41613090 16431 - PTB-315N10_RIKEN   2-way alignments AL050173 (181 aa/181 aa) 98 99 98 Protein motifs        
ZNF295   KIAA1227 protein 1 AB033053 Available data - 40039452 40061155 21704 ZNF295 1 Available data 41699993 41721629 21637 - PTB-058M07_YMGC Zfp295
NM_175428 		2-way alignments AB033053 (1066 aa/1066 aa) 99 99 99 Protein motifs   3-way alignment multiple-way alignment  
C21orf121 PRED87 hypothetical gene LOC150142, clone MGC:39705 IMAGE:5271985, mRNA, complete cds 1 BC029588 Available data + 40073083 40075737 2655 C21orf121 ¦ 1 Available data 41733564 41736175 2612 + PTB-058M07_YMGC   2-way alignments BC029588 (137 aa/151 aa) 98             Methionine change;
C21orf128 FLJ33471 hypothetical protein FLJ33471 (FLJ33471), mRNA 1 NM_152507 Available data - 40152949 40159263 6315 C21orf128 1 Available data 41813623 41819948 6326 - PTB-059D22_YMGC PTB-304P03_RIKEN PTB-058M07_YMGC   2-way alignments NM_152507 (162 aa/32 aa) 98             Stop-codon change;
UMODL1   gene similar to uromodulin 1 spliced EST BM554176 Available data + 40171971 40193810 21840 UMODL1 1 Available data 41832770 41854975 22206 + PTB-059D22_YMGC   2-way alignments AK093654 (272 aa/272 aa) 98 98 97 Protein motifs     multiple-way alignment  
ABCG1 ABC8, WHITE, WHT1, WHITE1-LSB white protein homolog (ATP-binding cassette transporter 8) 1 AY048757 X91249 Available data + 40270084 40348059 77976 ABCG1 § 1 Available data 41923560 42000430 76871 + PTB-059D22_YMGC, PTB-292C11_RIKEN, RP43-052N14_RIKEN Abcg1
U34920 		2-way alignments AY048757 (824 aa/246 aa)
X91249 (674 aa/674 aa)		 99 99 100 Protein motifs gtgag..tgcag/gtaag..tgcag aaggt..ttcag/aaggt..ttcag 3-way alignment multiple-way alignment Stop-codon change (AY048757);
TFF3 HP1.B, ITF, TFI trefoil factor 3, HITF, human intestinal trefoil factor 1 BC017859 L08044 Available data - 40362889 40366224 3336 TFF3 1 Available data 42015175 42018506 3332 - PTB-292C11_RIKEN Tff3
NM_011575 		2-way alignments BC017859 (73 aa/73 aa)
L08044 (73 aa/73 aa)		 98 99 98 Protein motifs   3-way alignment    
TFF2 SML1, SP trefoil factor 2, SML1, human spasmolytic polypeptide (SP) 1 BC032820 X51698 Available data - 40397171 40401792 4622 TFF2 1 Available data 42040525 42044747 4223 - PTB-292C11_RIKEN Tff2
NM_009363 		2-way alignments BC032820 (129 aa/129 aa)
X51698 (130 aa/130 aa)		 98 99 99 Protein motifs   3-way alignment multiple-way alignment  
TFF1 BCEI, D21S21, PS2, HPS2 trefoil factor, BCE1, human pS2 induced by estrogen from human breast cancer cell line MCF-7 1 E02904 X00474 X52003 Available data - 40413096 40417349 4254 TFF1 1 Available data 42055924 42060162 4239 - PTB-292C11_RIKEN Tff1
NM_009362 		2-way alignments E02904 (84 aa/84 aa)
X00474 (84 aa/84 aa)
X52003 (84 aa/84 aa)		 99 99 98 Protein motifs   3-way alignment multiple-way alignment  
TMPRSS3   mRNA for serine protease 1 AB038157 AB038158 AB038159 AB038160 AF201380 Available data - 40422704 40446905 24202 TMPRSS3 1 Available data 42065514 42089846 24333 - PTB-292C11_RIKEN Tmprss3
NM_080727 		2-way alignments AB038157 (454 aa/454 aa)
AB038158 (327 aa/327 aa)
AB038159 (327 aa/327 aa)
AB038160 (344 aa/354 aa)
AF201380 (453 aa/453 aa)		 98 98 98.5 Protein motifs   3-way alignment multiple-way alignment  
UBASH3A   gene similar to UBA containing SH3 domain 1 AJ277750 BC028138 Available data + 40454724 40498479 43756 UBASH3A 1 Available data 42097652 42141709 44058 + RP43-139F08_YMGC, PTB-292C11_RIKEN   2-way alignments AJ277750 (661 aa/661 aa)
BC028138 (451 aa/451 aa)		 98 98 98 Protein motifs gtgag..tgcag/gtgag..cgcag   multiple-way alignment  
TSGA2   Homo sapiens TSGA2 mRNA for testis specific protein A2, complete cds 1 AB006536 AB041016 Available data - 40523304 40547169 23866 TSGA2 1 Available data 42166467 42190073 23607 - RP43-139F08_YMGC Tsga2
NM_025290 		2-way alignments AB006536 (309 aa/309 aa)
AB041016 (309 aa/309 aa)		 98 98 98 Protein motifs   3-way alignment multiple-way alignment  
SLC37A1   glycerol 3-phosphate permease 1 AJ269529 AF311320 AK025993 Available data + 40550447 40632235 81789 SLC37A1 1 Available data 42193359 42276859 83501 + RP43-139F08_YMGC, RP43-114M01_RIKEN Slc37a1
NM_020258 		2-way alignments AF311320 (533 aa/533 aa)
AJ269529 (533 aa/533 aa)		 98 99 99 Protein motifs gtaag..tgcag/gtaag..cacag 3-way alignment multiple-way alignment  
PDE9A PDE9A2 CGMP-specific 3', 5'-cyclic phosphodiesterase type 9, EC 3.1.4.17. 1 AF048837 AF067223 AF067224 AF067225 AF067226 BC009047 Available data + 40704570 40826327 121758 PDE9A 1 Available data 42345576 42468409 122834 + PTB-105H12_YMGC, RP43-015P20_YMGC Pde9a
AF031147 		2-way alignments AF048837 (593 aa/593 aa)
AF067223 (593 aa/593 aa)
AF067224 (533 aa/533 aa)
AF067225 (466 aa/466 aa)
AF067226 (465 aa/37 aa)
BC009047 (533 aa/533 aa)		 99 99 99 Protein motifs   3-way alignment multiple-way alignment Stop-codon change (AF067226);
WDR4   WD repeat domain 4 1 AJ243912 AJ243913 AK056343 Available data - 40893909 40930342 36434 WDR4 1 Available data 42535786 42571339 35554 - PTB-053J19_YMGC, PTB-105H12_YMGC Wdr4
NM_021322 		2-way alignments AJ243912 (412 aa/412 aa)
AJ243913 (412 aa/412 aa)
AK056343 (266 aa/266 aa)		 97.66666667 98 97.66666667 Protein motifs gtcag..tctag/gttag..tctag 3-way alignment multiple-way alignment  
NDUFV3   NADH-ubiquinone oxidoreductase 9 kD subunit precursor, EC 1.6.5.3. 1 AK056041 BC021217 Available data + 40930459 40959918 29460 NDUFV3 1 Available data 42571458 42601261 29804 + PTB-053J19_YMGC, PTB-105H12_YMGC Ndufv3
BC013640 		2-way alignments AK056041 (456 aa/456 aa)
BC021217 (473 aa/473 aa)		 99 99 98 Protein motifs gtaag..cccag/gtaag..cctag 3-way alignment multiple-way alignment  
C21orf105   Homo sapiens, clone IMAGE:3840937 1 BC005107 Available data - 40967618 40976433 8816 C21orf105 1 Available data 42609976 42618343 8368 - PTB-053J19_YMGC, PTB-071B01_YMGC, PTB-105H12_YMGC   2-way alignments BC005107 (179 aa/179 aa) 97 97 95 Protein motifs        
PKNOX1   human homeobox-containing protein 1 BC007746 U68727 Y13613 Available data + 41025421 41082771 57351 PKNOX1 § 1 Available data 42662583 42720464 57882 + PTB-053J19_YMGC, PTB-071B01_YMGC Pknox1
NM_016670 		2-way alignments BC007746 (436 aa/436 aa)
U68727 (436 aa/436 aa)
Y13613 (436 aa/436 aa)		 98.33333333 99 100 Protein motifs   3-way alignment multiple-way alignment  
CBS   human cystathionine-beta-synthase, EC 4.2.1.22. 1 AL137314 BC007257 BC010242 BC011381 L00972 L14577 L19501 Available data - 41104006 41127177 23172 CBS 1 Available data 42741672 42768363 26692 - CH251-445J22_YMGC, PTB-053J19_YMGC, PTB-071B01_YMGC Cbs
NM_144855 		2-way alignments BC007257 (551 aa/551 aa)
BC010242 (551 aa/551 aa)
BC011381 (551 aa/551 aa)
L00972 (446 aa/446 aa)
L14577 (551 aa/551 aa)
L19501 (551 aa/551 aa)		 98 99 99 Protein motifs gtaca..tccag/gtaca..tccgg 3-way alignment multiple-way alignment  
U2AF1 U2AF35 human U2 snRNP auxiliary factor small subunit 1 M96982 Available data - 41143772 41158339 14568 U2AF1 § 1 Available data 42782892 42797374 14483 - CH251-445J22_YMGC U2af1
NM_024187 		2-way alignments M96982 (240 aa/240 aa) 99 99 100 Protein motifs   3-way alignment multiple-way alignment  
D21S2087   pseudogene for HSPC241 mRNA, complete cds 4     - 41166014 41166662 649 D21S2087 4 Available data 42805033 42805682 650 - CH251-445J22_YMGC                      
CRYAA CRYA1 human alphaA-crystallin (CRYA1) 1 U05569 U66584 Available data + 41219846 41223618 3773 CRYAA § 1 Available data 42857630 42861406 3777 + CH251-445J22_YMGC Cryaa
AJ310308 		2-way alignments U05569 (173 aa/173 aa)
U66584 (173 aa/173 aa)		 99 99 100 Protein motifs   3-way alignment multiple-way alignment  
PRED47   exon prediction supported by unspliced ESTs 3 unspliced EST AW516786 Available data - 41362052 41362511 460 PRED47 3 Available data 42991956 42992415 460 - PTB-013J17_YMGC, PTB-058L13_YMGC, PTB-190I13_YMGC   2-way alignments AW516786 (37 aa/37 aa) 96 97 97 Protein motifs        
PRED48   exon prediction supported by unspliced ESTs 3 unspliced ESTs AL530227 BE792872 Available data - 41373690 41394418 20729 PRED48 3 Available data 43003021 43004319 1299 - PTB-013J17_YMGC, PTB-058L13_YMGC, PTB-190I13_YMGC   2-way alignments AL530227 (88 aa/88 aa)
XM_071328 (628 aa/- aa)		 98 99 100 Protein motifs gtcag..tctag/ctcag..tctag      
SNF1LK   homolog to a Rattus norvegicus and a Mus musculus protein kinase KID2 (Kid2) (EC 2.7.1.37) (AF106937, U11494); 2 BC038504 Available data - 41427149 41439765 12617 SNF1LK 2 Available data 43055919 43068531 12613 - PTB-058L13_YMGC Snf1lk
NM_010831 		2-way alignments BC038504 (783/786) 98.625 99 100 Protein motifs gtagg..cacag/gcagg..gacag 3-way alignment multiple-way alignment  
C21orf125 FLJ38036, PRED49 spliced partial mRNA 2 spliced EST AK095355 Available data + 41459252 41466536 7285 C21orf125 2 Available data 43088066 43095359 7294 + PTB-058L13_YMGC   2-way alignments   97.5       ccagc..ccacc/ccagc..cctcc      
C21orf84   chromosome 21 open reading frame 84 (C21orf84), mRNA 1 NM_153752 Available data - 41474745 41490874 16130 C21orf84 1 Available data 43103583 43120508 16926 - PTB-044B23_YMGC PTB-058L13_YMGC   2-way alignments NM_153752 (77 aa/77 aa) 98 99 98 Protein motifs        
C21orf72 PRED50 spliced partial mRNA 2 spliced EST AA411910 Available data + 41477960 41479949 1990 C21orf72 2 Available data 43106821 43108810 1990 + PTB-058L13_YMGC   2-way alignments   98              
HSF2BP   heat shock transcription factor 2 binding protein 1 AB007131 Available data - 41541843 41672145 130303 HSF2BP 1 Available data 43167568 43295885 128318 - PTB-016O01_YMGC, PTB-044B23_YMGC, PTB-109N16_GBF Hsf2bp
AK016553 		2-way alignments AB007131 (334 aa/334 aa)
BC000153 (334 aa/334 aa)		 99 99 99 Protein motifs gttag..tgcag/gtgag..tgcag 3-way alignment multiple-way alignment  
RPL31P1 RPL31P ribosomal protein L31 pseudogene 4     + 41563893 41564294 402 RPL31P1 4 Available data 43189544 43189945 402 + PTB-016O01_YMGC, PTB-044B23_YMGC                      
H2BFS H2Bf H2B histone family S member 1 AB041017 Available data + 41577851 41578280 430 H2BFS             genomic gap                      
KIAA0179   human mRNA for KIAA0179 protein 1 D80001 Available data + 41672251 41708729 36479 KIAA0179 1 Available data 43295991 43332452 36462 + PTB-016O01_YMGC, PTB-109N16_GBF Full length cDNA
XM_128486 		2-way alignments D80001 (762 aa/762 aa) 99 99 99 Protein motifs tctga..ccgcc/tctaa..ccgcc 3-way alignment multiple-way alignment  
PDXK PKH, PNK human pyridoxal kinase, EC 2.7.1.35. 1 BC000123 BC005825 U89606 Available data + 41731748 41768911 37164 PDXK 1 Available data 43356559 43394968 38410 + PTB-111H18_RIKEN, PTB-109N16_GBF Pdxk
XM_125778 		2-way alignments BC000123 (312 aa/312 aa)
BC005825 (284 aa/284 aa)
U89606 (312 aa/312 aa)		 98 98 98 Protein motifs gtaag..gctag/gtaag..gccag gtaag..cctag/gtaag..tctag gtacg..cgcag/gtatg..cgcag 3-way alignment multiple-way alignment  
C21orf124 FLJ31940, PRED79 Homo sapiens, hypothetical protein MGC15873 1 AK056502 BC008008 BC021550 Available data + 41741552 41751513 9962 C21orf124 1 Available data 43366599 43376760 10162 + PTB-016O01_YMGC, PTB-109N16_GBF   2-way alignments AK056502 (162 aa/79 aa)
BC008008 (162 aa/79 aa)
BC021550 (162 aa/79 aa)		 97             Stop-codon change;
C21orf97 FLJ21324 unknown function 1 AK024977 BC003651 Available data + 41773147 41774949 1803 C21orf97 1 Available data 43399197 43401000 1804 + PTB-109N16_GBF   2-way alignments AK024977 (228 aa/214 aa)
BC003651 (630 aa/214 aa)		 98 97 96 Protein motifs       Methionine change;
CSTB CST6, STFB cystatin B (liver thiol proteinase inhibitor) 1 BC003370 BC010532 L03558 Available data - 41786601 41789016 2416 CSTB 1 Available data 43410121 43412567 2447 - PTB-111H18_RIKEN, PTB-109N16_GBF Cstb
NM_007793 		2-way alignments BC003370 (98 aa/98 aa)
BC010532 (98 aa/98 aa)
L03558 (98 aa/98 aa)		 98 99 98 Protein motifs   3-way alignment    
D21S2056E NNP-1, NNP1 human NNP-1/Nop52 (NNP-1), novel nuclear protein 1 1 AY033999 BC014787 U79775 Available data + 41802245 41816757 14513 D21S2056E 1 Available data 43424965 43439559 14595 + PTB-016O01_YMGC, PTB-111H18_RIKEN, PTB-109N16_GBF Nnp1
NM_010925 		2-way alignments AY033999 (328 aa/311 aa)
BC014787 (359 aa/359 aa)
U79775 (461 aa/461 aa)		 98 99 99 Protein motifs gtgag..caaag/gtgag..cacag 3-way alignment multiple-way alignment Methionine change (AY033999);
MYL6P   myosine alkali light chain 6 pseudogene 4     - 41868385 41869025 641 MYL6P 4 Available data 43490962 43491602 641 - PTB-111H18_RIKEN                      
AGPAT3   1-acylglycerol-3-phosphate O-acyltransferase 3 1 AF156774 AB040138 AF156775 Available data + 41877913 41995376 117464 AGPAT3 1 Available data 43500430 43618183 117754 + PTB-047B05_RIKEN, PTB-111H18_RIKEN Agpat3
NM_053014 		2-way alignments AB040138 (376 aa/376 aa)
AF156774 (376 aa/376 aa)
AF156775 (314 aa/314 aa)
BC011971 (376 aa/376 aa)		 98 98 99 Protein motifs   3-way alignment multiple-way alignment  
TMEM1 EHOC1, GT334 epilepsy holoprosencephaly candidate-1 protein 1 U19252 U61500 Available data + 42024993 42118907 93915 TMEM1 1 Available data 43648137 43742459 94323 + PTB-047B05_RIKEN Tmem1
XM_125775 		2-way alignments U19252 (1259 aa/1259 aa)
U61500 (1259 aa/1259 aa)		 99 99 99 Protein motifs   3-way alignment multiple-way alignment  
H2AFZP   histone H2AZ pseudogene 4     - 42058602 42059798 1197 H2AFZP 4 Available data 43682673 43683863 1191 - PTB-047B05_RIKEN                      
PWP2H PWP2 periodic tryptophan protein 2 homolog 1 BC013309 BC014988 X95263 U53346 U56085 Available data + 42120034 42143834 23801 PWP2H 1 Available data 43743590 43768337 24748 + PTB-047B05_RIKEN, PTB-051O03_RIKEN Pwp2h
XM_125751 		2-way alignments BC013309 (917 aa/917 aa)
BC014988 (917 aa/917 aa)
U53346 (919 aa/919 aa)
U56085 (919 aa/919 aa)
X95263 (919 aa/919 aa)		 99 99 99 Protein motifs gtatg..tgcag/gtacg..tgcag 3-way alignment multiple-way alignment  
C21orf33 ES1, KNPH, HES1 human HES1 protein, homolog to E.coli and zebrafish ES1 protein 1 BC002370 BC003587 D86061 U53003 Y07572 Available data + 42146267 42158376 12110 C21orf33 1 Available data 43770764 43782785 12022 + PTB-051O03_RIKEN D10jhu81e
AK003866 		2-way alignments BC002370 (268 aa/268 aa)
BC003587 (268 aa/268 aa)
D86061 (268 aa/268 aa)
U53003 (268 aa/268 aa)
Y07572 (268 aa/268 aa)		 98 99 99 Protein motifs catat..gcaca/catat..gcaca 3-way alignment    
C21orf32   putative gene with similarities to yeast gene YDL038c 3 unspliced EST R72937 Available data - 42180220 42180683 464 C21orf32 3 Available data 43804762 43805225 464 - PTB-051O03_RIKEN   2-way alignments   98              
ICOSL KIAA0653 human mRNA for KIAA0653 protein 1 AB014553 Available data - 42239488 42253599 14112 ICOSL 1 Available data 43865168 43879371 14204 - PTB-051O03_RIKEN Icosl
NM_015790 		2-way alignments AB014553 (515 aa/77 aa) 98       gtggt..ctgag/gtggc..ctgag gagac..tccag/gagac..cccag 3-way alignment multiple-way alignment Stop-codon change;
DNMT3L   human cytosine-5-methyltransferase 3-like protein 1 AF194032 BC002560 Available data - 42258994 42274870 15877 DNMT3L 1 Available data 43884715 43900278 15564 - CH251-479I13_MOLGEN, PTB-051O03_RIKEN Dnmt3l
AF220524 		2-way alignments AF194032 (387 aa/387 aa)
BC002560 (386 aa/386 aa)		 99 99 99 Protein motifs gtgag..cttag/gtgag..ctcag gtgag..cacag/gtgaa..cgcag 3-way alignment multiple-way alignment  
AIRE   autoimmune regulator (APECED protein) 1 AB006682 AB006683 AB006685 Z97990 Available data + 42298534 42310873 12340 AIRE 1 Available data 43923354 43936291 12938 + CH251-479I13_MOLGEN Aire
AJ243821 		2-way alignments AB006682 (545 aa/545 aa)
Z97990 (545 aa/545 aa)
AB006685 (254 aa/229 aa)
AB006683 (348 aa/223 aa)		 97.5 98 98 Protein motifs   3-way alignment multiple-way alignment Methionine change (AB006683, AB006685);
PFKL   human liver-type 1-phosphofructokinase, EC 2.7.1.11. 1 BC007536 BC008964 BC009919 X15573 Available data + 42312705 42340027 27323 PFKL § 1 Available data 43938093 43964919 26827 + CH251-479I13_MOLGEN Pfkl
NM_008826 		2-way alignments AK054735 (367 aa/367 aa)
BC007536 (780 aa/780 aa)
BC008964 (780 aa/780 aa)
BC009919 (780 aa/780 aa)
BC018295 (465 aa/465 aa)
X15573 (780 aa/780 aa)		 98 98 100 Protein motifs gtggg..cccag/gtgag..cccag gtgag..ctcag/gtgag..cttag gtgag..cgcag/gtgag..tgcag 3-way alignment multiple-way alignment  
C21orf2 KNP-5, YFS/A2 nuclear encoded mitochondrial protein, cDNA A2-YF5 1 BC031300 Y11392 U84569 Z93322 Available data - 42341598 42352047 10450 C21orf2 1 Available data 43966488 43976670 10183 - CH251-479I13_MOLGEN Full length cDNA
AK004032 		2-way alignments BC031300 (375 aa/376 aa)
U84569 (255 aa/255 aa)
Y11392 (256 aa/256 aa)
Z93322 (256 aa/256 aa)		 98.25 98.25 98.25 Protein motifs   3-way alignment multiple-way alignment 1 aa insertion (BC031300);
TRPM2 TRPC7, KPN3 transient receptor potential-related channel 7, a novel putative Ca2+ channel protein 1 AB001535 Available data + 42365910 42455735 89826 TRPM2 1 Available data 43990645 44088112 97468 + PTB-061A04_MOLGEN, CH251-479I13_MOLGEN, PTB-061A04_RIKEN Trpc7
NM_012035 		2-way alignments AB001535 (1503 aa/1502 aa)
HSA417076 (1450 aa/1449 aa)		 98 98 98 Protein motifs gttgg..cgcag/gttgg..tgcag 3-way alignment multiple-way alignment 1 aa deletion;
LRRC3   mRNA for LRRC3 1 AB058646 Available data + 42469289 42470082 794 LRRC3 1 Available data 44101763 44102556 794 + PTB-061A04_MOLGEN, PTB-061A04_RIKEN Lrrc3
NM_145152 		2-way alignments AB058646 (257 aa/257 aa) 98 99 98 Protein motifs   3-way alignment multiple-way alignment  
C21orf30   intronless long ORF, AL117578 1 AL117578 Available data + 42472585 42474854 2270 C21orf30 1 Available data 44105055 44107465 2411 + PTB-061A04_MOLGEN, PTB-061A04_RIKEN   2-way alignments AL117578 (247 aa/268 aa) 97 98 97 Protein motifs       Stop-codon change;
C21orf29 PRED53 Unknown function 1 BC021197 HSA487962 Available data - 42510546 42724266 213721 C21orf29 1 Available data 44142775 44357910 215136 - PTB-061A04_MOLGEN, PTB-105M10_MOLGEN, PTB-061A04_RIKEN Full length cDNA
NM_145855		 2-way alignments</