#cparse("/super/config/super.config.vm") #cparse("${superIncludes}/super.before-doctype.fhtml") #cparse("${superIncludes}/super.head-top.fhtml") Comparative Gene Catalog #cparse("${superIncludes}/super.head-bottom.fhtml") #cparse("${superIncludes}/super.body-top.fhtml")

Comparative Gene Catalog Human Chromosome 21 / Chimpanzee chromosome 22

by The International Chimpanzee chromosome 22 consortium
LEGEND
Human Gene symbol Aliases Gene Description Human Gene Category Human cDNA Accession No. cDNA sequence extracted from HSA21 seq/gene structure/aa seq DNA Strand on HSA21 seq Human Gene Position1 on HSA21 seq Human Gene Position2 on HSA21 seq Human gene Size (bp) Chimp Gene symbol Chimp Gene Category cDNA sequence extracted from PTR22 seq/gene structure/aa seq Chimp Gene Position1 on PTR22 seq Chimp Gene Position2 on PTR22 seq Chimp gene Size (bp) DNA Strand on PTR22 seq EST2GENOME alignment cDNA/chimp genomic clone(s) Mouse ortholog cDNA/Peptide Alignments Protein length in human/chimp %identity cDNA (nt) %identity ORF (nt) %identity ORF (aa) Protein motifs Changed splice sites (human/chimp) Peptide 3-way Alignment (human/chimp/mouse) Peptide multiple-way Alignment (all species) Structural protein changes
TPTE   tensin, putative protein-tyrosine phosphatase, EC 3.1.3.48. 1 AF007118 Available data - 7669047 7753226 84180 TPTE             sequencing gap Tpte
AJ311311 		              3-way alignment multiple-way alignment  
CYC1LP4   cytochrome c pseudogene 4     - 7698271 7698625 355 CYC1LP4             sequencing gap                      
MLL3P Pseudo1 putative zinc finger protein pseudogene 4     - 7760531 7801797 41267 MLL3P             sequencing gap                      
Pseudo1.1   pseudogene similar to cDNA DKFZp586E1423 4     - 7866295 7924547 58253 Pseudo1.1             sequencing gap                      
TTLL1P Pseudo2 tubulin tyrosine ligase-like 1 pseudogene 4     - 7876388 7876648 261 TTLL1P             sequencing gap                      
PRED1   putative gene, protein kinase C ETA type (EC 2.7.1.) like 3   Available data + 7910043 7910115 73 PRED1             sequencing gap                      
VN1R7P ORLP1 pheromone receptor pseudogene 4     - 7914933 7916675 1743 VN1R7P             sequencing gap                      
EIF3S5P   eucaryotic initiation factor-3, subunit 5 pseudogene 4     - 7942640 7943688 1049 EIF3S5P             sequencing gap                      
Centromere                                                        
C21orf99   chromosome 21 open reading frame 99 (C21orf99), mRNA 1 NM_153773 Available data + 11076976 11086203 9228 C21orf99             sequencing gap                      
ZNF355P PRED65 pseudogene with similarity to zinc finger proteins 4     - 11130506 11132296 1791 ZNF355P             sequencing gap                      
FGF7L PRED3 homolog to a Homo sapiens mRNA, proto-oncogene protein precursor like (S81661) 3   Available data + 11383451 11385008 1558 FGF7L             sequencing gap                      
C21orf110 PRED4 putative gene with similarities to KIAA1074 and KIAA0565; 2 spliced EST BQ429618 Available data - 11420593 11433588 12996 C21orf110             sequencing gap                      
GTF2IP2   pseudogene for general transcription factor 2-I (GTF2I) mRNA 4     - 11477547 11523374 45828 GTF2IP2             sequencing gap                      
VN1R8P ORLP2 pheromone receptor pseudogene 4     + 11510590 11512237 1648 VN1R8P             sequencing gap                      
SNX19P   pseudogene for D87443 4     + 11559304 11564203 4900 SNX19P             sequencing gap                      
OR4K12P GU27_RAT_9 olfactory receptor, family 4, subfamily K, member 12 pseudogene 4     - 11615270 11616197 928 OR4K12P 4 Available data 13680319 13681246 928 - PTB-520F08_RIKEN                      
ANKRD21 POTE Expressed in prostate, ovary, testis, and placenta (POTE), mRNA 1 NM_174981 Available data + 11644369 11675777 31409 ANKRD21 1 Available data 13708968 13740019 31052 + PTB-056N14_RIKEN PTB-520F08_RIKEN   2-way alignments NM_174981 (584 aa/584 aa) 98 98 96 Protein motifs        
CXADRP CXAR_HUMAN_958 coxsackie virus and adenovirus receptor pseudogene 4     + 11710161 11712606 2446 CXADRP 4 Available data 13776311 13778760 2450 + PTB-056N14_RIKEN                      
FEM1DP   pseudogene for IR2179379 4     + 11797921 11800235 2315 FEM1DP 4 Available data 13862641 13864970 2330 + PTB-056N14_RIKEN, PTB-084L06_RIKEN                      
TERF1P   pseudogene for AF003001 4     + 11810278 11812804 2527 TERF1P 4 Available data 13875005 13877551 2547 + PTB-056N14_RIKEN, PTB-084L06_RIKEN                      
CNN2 CNN2P calponin P pseudogene 4     + 11860862 11863017 2156 CNN2 4 Available data 13925599 13927760 2162 + PTB-084L06_RIKEN                      
ZNF114P1 CF2_DROME_12 pseudogene for Q8NC26 4     + 11872922 11873987 1066 ZNF114P1 4 Available data 13937676 13938739 1064 + PTB-084L06_RIKEN                      
CYP4F3LP   cytochrome P450 pseudogene 4     - 11877321 11882844 5524 CYP4F3LP 4 Available data 13942100 13947627 5528 - PTB-084L06_RIKEN                      
C21orf15   Homo sapiens C21orf15 protein (C21orf15) mRNA, partial cds 1 AY040090 Available data - 11877334 11882556 5223 C21orf15 1 Available data 13942113 13947339 5227 - PTB-084L06_RIKEN   2-way alignments AY040090 (110 aa/110 aa) 98 99 98 Protein motifs gtgag..accag/gcgag..accag      
D21S2082   pseudogene for melanoma antigen mRNA 4     + 11942451 11944627 2177 D21S2082 4 Available data 14025871 14028040 2170 + PTB-080D12_RIKEN                      
C21orf81   chromosome 21 open reading frame 81 (C21orf81), mRNA 1 NM_153750 Available data - 11977956 12014636 36681 C21orf81 4 Available data 14073333 14074092 760 - PTB-080D12_RIKEN     NM_153750 (89 aa/- aa)                
NF1L1 NF1L1P neurofibromatosis type 1 pseudogene 4     + 12033352 12041033 7682 NF1L1 4 Available data 14093902 14101582 7681 + PTB-080D12_RIKEN                      
D21S2083   pseudogene for AK002063 4     + 12041237 12049072 7836 D21S2083 4 Available data 14101786 14109473 7688 + PTB-080D12_RIKEN, PTB-258H22_RIKEN                      
C21orf126 PRED70, DKFZp434A171 spliced partial mRNA 2 spliced EST AA306657 Available data + 12098503 12103158 4656 C21orf126 2 Available data 14154172 14158756 4585 + PTB-274F15_RIKEN, PTB-407O15_RIKEN   2-way alignments AA306657 (127 aa/127 aa) 97 97 95 Protein motifs        
LIPI PRED5 putative gene, lipase (EC 3.1.1.3) like 1 BC028732 Available data - 12143005 12241141 98137 LIPI 1 Available data 14191011 14288927 97917 - PTB-005B20_RIKEN, PTB-274F15_RIKEN   2-way alignments BC028732 (273 aa/293 aa) 98         3-way alignment   Stop-codon change;
RBM11   Homo sapiens clone ns04h06 RNA binding motif protein 11 (RBM11) mRNA, complete cds 1 AF519623 AK091331 AY077695 BC030196 Available data + 12250350 12262568 12219 RBM11 1 Available data 14298146 14310330 12185 + PTB-005B20_RIKEN, RP43-011E05_RIKEN   2-way alignments AF519623 (233 aa/233 aa)
AK091331 (167 aa/167 aa)
AY077695 (167 aa/167 aa)
BC030196 (281 aa/281 aa)		 98.25 99 98.5 Protein motifs   3-way alignment    
ABCC13 C21orf73, PRED6 putative gene, multidrug resistance associated protein like 1 AF418600 AF518320 AY063514 AY063515 Available data + 12307991 12372209 64219 ABCC13 1 Available data 14356050 14385915 29866 + PTB-118J15_RIKEN, RP43-011E05_RIKEN   2-way alignments AF418600 (325 aa/19 aa)
AF518320 (245 aa/179 aa)
AY063514 (274 aa/19 aa)
AY063515 (140 aa/19 aa)		 98 99 97 Protein motifs tccta..acttt/tccta..acttt     Stop-codon change;
STCH   human microsomal stress 70 protein ATPase core 1 U04735 Available data - 12407033 12417347 10315 STCH 1 Available data 14459120 14469488 10369 - PTB-118J15_RIKEN Stch
AK021006 		2-way alignments U04735 (471 aa/471 aa) 99 99 99 Protein motifs   3-way alignment multiple-way alignment  
SAMSN1 SAMSN-1 SH3-SAM adaptor protein (HACS1) 1 AF218085 AF222927 Available data - 12519420 12617594 98175 SAMSN1 1 Available data 14584248 14682810 98563 - PTB-095F11_RIKEN, PTB-118J15_RIKEN Samsn1
AF222928 		2-way alignments AF218085 (441 aa/441 aa)
AF222927 (373 aa/373 aa)		 98 98 97 Protein motifs   3-way alignment    
POLR2CP   pseudogene similar to RNA polymerase H subunits 4     + 12791780 12793431 1652 POLR2CP 4 Available data 14854857 14856508 1652 + RP43-017I17_RIKEN                      
GAPDP16 G3P1_SCHPO_19 pseudogene for G3P2_HUMAN 4     + 12808495 12809672 1178 GAPDP16 4 Available data 14871758 14872939 1182 + RP43-017I17_RIKEN                      
NRIP1 RIP140 nuclear factor RIP140 1 X84373 Available data - 12995432 13002670 7239 NRIP1 1 Available data 15052998 15060235 7238 - RP43-009O02_RIKEN Nrip1
NM_008735 		2-way alignments X84373 (1158 aa/1158 aa) 98 99 99 Protein motifs   3-way alignment multiple-way alignment  
C21orf116 PRED82 Homo sapiens clone FLB9530 PRO2574 mRNA, complete cds 1 AF130090 Available data + 13084381 13086571 2191 C21orf116 1 Available data 15142336 15144537 2202 + RP43-009O02_RIKEN   2-way alignments AF130090 (69 aa/69 aa) 99 99 97 Protein motifs        
CYC1LP5   cytochrome C pseudogene 4     - 13523125 13524985 1861 CYC1LP5 4 Available data 15581434 15583283 1850 - PTB-080A13_RIKEN                      
RAD23BLP   UV excision repair protein pseudogene 4     - 13728490 13728582 93 RAD23BLP 4 Available data 15790372 15790464 93 - PTB-084P08_RIKEN                      
USP25   ubiquitin specific protease USP25 (EC 3.1.2.15) 1 AF170562 AK022574 AK022447 Available data + 13764215 13914248 150034 USP25 1 Available data 15823074 15972066 148993 + PTB-084P08_RIKEN, PTB-131J13_RIKEN, PTB-141K15_RIKEN Usp25
NM_013918 		2-way alignments AF170562 (1087 aa/1087 aa)
AK022447 (523 aa/523 aa)
AK022574 (737 aa/737 aa)		 99 99 99 Protein motifs   3-way alignment multiple-way alignment  
RBPMSLP   RNA-binding protein hermes pseudogene 4     - 13778194 13778379 186 RBPMSLP 4 Available data 15836959 15837144 186 - PTB-084P08_RIKEN                      
C21orf34 C21orf35 Homo sapiens C21ORF34 (C21orf34) mRNA, partial cds, alternatively spliced 1 AF486622 AK095614 Available data + 14104713 14643965 539253 C21orf34 1 Available data 16169721 16708753 539033 + PTB-018G23_RIKEN, PTB-078F18_RIKEN, PTB-087F19_RIKEN, RP43-172K02_RIKEN Full length cDNA
AK012955 		2-way alignments AF486622 (64 aa/64 aa)
AK095614 (83 aa/83 aa)		 99 99.5 98.5 Protein motifs        
VDAC2P   voltage-dependent anion channel isoform 2 pseudogene 4     - 14128697 14129597 901 VDAC2P 4 Available data 16193789 16194689 901 - PTB-018G23_RIKEN                      
RPS26P5 RS26_CRICR_30 ribosomal protein S26 pseudogene 5 4     - 14155434 14155856 423 RPS26P5 4 Available data 16221704 16222126 423 - PTB-018G23_RIKEN                      
C21orf36   unspliced partial mRNA 3 unspliced EST AA017197 HSM804588 Available data - 14647605 14653470 5866 C21orf36 3 Available data 16712411 16718306 5896 - PTB-087F19_RIKEN, RP43-172K02_RIKEN   2-way alignments   97              
C21orf37   spliced partial mRNA 2 spliced ESTs N47348 AI420675 N56968 N56968 AI360889 Available data - 15475976 15483370 7395 C21orf37 2 Available data 17546161 17553537 7377 - PTB-089G12_RIKEN   2-way alignments   99       gtatg..tacag/gtatg..tatag      
D21S2084   pseudogene for D79205 4     - 15534669 15535048 380 D21S2084 4 Available data 17605050 17605429 380 - PTB-089G12_RIKEN                      
CXADR HCAR, HCAR2, CAR, CVB3 coxsackievirus B-adenovirus receptor protein 1 BC010536 U90716 Y07593 Available data + 15547244 15601157 53914 CXADR § 1 Available data 17617686 17671698 54013 + PTB-089G12_RIKEN Cxadr
NM_009988 		2-way alignments BC010536 (365 aa/365 aa)
U90716 (365 aa/365 aa)
Y07593 (365 aa/365 aa)		 99 99 100 Protein motifs   3-way alignment    
BTG3 ANA like, TOB5 B-cell translocation gene 1 D64110 Available data - 15627925 15646976 19052 BTG3 1 Available data 17698747 17717808 19062 - PTB-003F15_RIKEN Btg3
NM_009770 		2-way alignments D64110 (252 aa/252 aa) 99 99 99 Protein motifs   3-way alignment multiple-way alignment  
C21orf114 PRED75 homolog to a Homo sapiens B lymphocyte activation-related protein BC-2048 mRNA, complete cds (AF304443) 3   Available data + 15739597 15741644 2048 C21orf114 3 Available data 17810319 17812389 2071 + PTB-003F15_RIKEN   2-way alignments AF304443 (209 aa/36 aa) 98             Stop-codon change;
C21orf91 YG81 gene of unknown function 1 AF239726 AK023825 BC015468 Available data - 15823185 15853561 30377 C21orf91 1 Available data 17895064 17924855 29792 - PTB-005J02_RIKEN D16ertd472e
NM_025967 		2-way alignments AF239726 (221 aa/221 aa)
AK023825 (297 aa/297 aa)
BC015468 (139 aa/296 aa)		 98.66666667 99 99 Protein motifs   3-way alignment multiple-way alignment  
C21orf39   spliced partial mRNA 2 spliced ESTs T74237 F12577 R54144 Available data - 15869820 15919819 50000 C21orf39 2 Available data 17941121 17991325 50205 - CH251-530H12_RIKEN, PTB-005J02_RIKEN   2-way alignments F12577 (24 aa/24 aa)
R54144 (24 aa/24 aa)
T74237 (24 aa/24 aa)		 99 100 100 Protein motifs        
RPL37P3 RL37P human ribosomal protein L37 pseudogene 4     - 15928363 15928729 367 RPL37P3 4 Available data 18000381 18000747 367 - CH251-530H12_RIKEN                      
CHODL C21orf68, PRED12 weakly similar to LECTIN BRA-2 1 AF257472 AK022689 BC009418 Available data + 15935473 16301589 366117 CHODL § 1 Available data 18007482 18373344 365863 + CH251-530H12_RIKEN, PTB-022L23_RIKEN, PTB-075B06_RIKEN, RP43-149B05_RIKEN Chodl
AK014255 		2-way alignments AF257472 (273 aa/273 aa)
AK022689 (232 aa/232 aa)
BC009418 (273 aa/273 aa)		 99 99 100 Protein motifs   3-way alignment multiple-way alignment  
PRSS7 ENTK human enterokinase; EC 3.4.21.9. 1 U09860 Available data - 16303583 16437866 134284 PRSS7 1 Available data 18375308 18509210 133903 - RP43-149B05_RIKEN, RP43-169N06_RIKEN Prss7
U73378 		2-way alignments U09860 (1019 aa/1019 aa) 98 99 98 Protein motifs gtagg..catag/gtaag..catag gtatg..ttcag/gtatc..ttcag 3-way alignment multiple-way alignment  
PPIA3L   peptidylprolyl isomerase A (cyclophilin A)-like 3 1 BC007104 BC013915 BC018843 XM_039520 Available data + 16891948 16892707 760 PPIA3L ¦ 1 Available data 18946211 18946968 758 + PTB-042H12_RIKEN   2-way alignments BC007104 (165 aa/165 aa)
BC013915 (165 aa/165 aa)
BC018843 (165 aa/165 aa)
XM_039520 (165 aa/165 aa)		 98 98 98 Protein motifs        
SLC6A6P   taurine transporter processed pseudogene 4     + 17186555 17280592 94038 SLC6A6P 4 Available data 19239013 19333951 94939 + RP43-038C12_RIKEN, RP43-069C10_RIKEN, RP43-069G03_RIKEN                      
RPL37P4 RL37P2 human ribosomal protein L37 pseudogene 4     + 17628011 17628378 368 RPL37P4 4 Available data 19672791 19673155 365 + RP43-049N07_RIKEN                      
C1QBPP   human splicing factor 2 hyaluronic acid-binding protein (SF2p32) pseudogene 4     - 17793327 17794335 1009 C1QBPP 4 Available data 19837895 19838905 1011 - RP43-136G21_RIKEN, RP43-147F06_RIKEN                      
C21orf40   spliced partial mRNA 2 spliced EST AA412132 Available data - 17927486 17933962 6477 C21orf40 2 Available data 19972454 19978951 6498 - RP43-138K13_RIKEN   2-way alignments   99       gtaag..catag/gtaag..ctgag      
FDPSP   farnesyl pyrophosphate synthetase processed pseudogene 4     + 18422538 18423050 513 FDPSP 4 Available data 20466040 20466552 513 + PTB-027C13_RIKEN                      
KRT18P2   cytokeratin 18 processed pseudogene 4     - 18459100 18460344 1245 KRT18P2 4 Available data 20502631 20503875 1245 - PTB-027C13_RIKEN                      
RPS3AP1 RPS3AP ribosomal protein S3 processed pseudogene 4     - 18464604 18464967 364 RPS3AP1 4 Available data 20507998 20508386 389 - PTB-027C13_RIKEN                      
C21orf131 FLJ37539, PRED14 human cDNA clone 280692 2 spliced EST AK094858 Available data - 18776801 18837268 60468 C21orf131 2 Available data 20821229 20878688 57460 - RP43-044K09_RIKEN   2-way alignments AK094858 (52 aa/52 aa)
N50515 (52 aa/52 aa)		 98.33333333 97 92 Protein motifs        
PPIAP   cyclophilin-related processed pseudogene 4     - 18862129 18862845 717 PPIAP 4 Available data 20904134 20904852 719 - RP43-044K09_RIKEN                      
NCAM2 NCAM21 neural cell adhesion molecule 2 precursor 1 U75330 Available data + 19032715 19574307 541593 NCAM2 1 Available data 21074670 21618136 543467 + CH251-126A17_RIKEN, PTB-401N11_RIKEN, RP43-046F21_RIKEN, RP43-073J16_RIKEN, RP43-104O21_RIKEN Ncam2
NM_010954 		2-way alignments U75330 (837 aa/837 aa) 99 99 99 Protein motifs   3-way alignment multiple-way alignment  
PRED15   exon prediction only 3   Available data + 19660738 19790540 129803 PRED15 3 Available data 21705502 21918004 212503 + PTB-072G02_RIKEN, RP43-040P11_RIKEN, RP43-104O21_RIKEN, RP43-156P08_RIKEN   2-way alignments   97       atttg..gcaac/acttg..gcaac      
C21orf117 PRED89 Homo sapiens cDNA clone IMAGE:3953669, partial cds 1 BC009878 Available data - 19757506 19771532 14027 C21orf117 1 Available data 21802648 21816706 14059 - RP43-156P08_RIKEN RP43-040P11_RIKE PTB-072G02_RIKEN   2-way alignments BC009878 (38 aa/38 aa) 95 96 89 Protein motifs        
C21orf74 PRED16 Homo sapiens clone qd65g07 PRED16 protein (PRED16) mRNA, complete cds 1 AY077696 Available data + 20132828 20150739 17912 C21orf74 1 Available data 22175199 22191815 16617 + PTB-096O09_RIKEN, RP43-076N07_RIKEN   2-way alignments AY077696 (52 aa/79 aa or 48 aa) 98             Stop-codon change;
Pseudo3   ETS-like processed pseudogene 4     - 20202128 20202626 499 Pseudo3 4 Available data 22243233 22243726 494 - RP43-076N07_RIKEN                      
Pseudo4   ERK3 protein kinase pseudogene 4     - 20469237 20473024 3788 Pseudo4 4 Available data 22479643 22483552 3910 - RP43-047O12_RIKEN                      
MAPK6P   pseudogene for L77964 4     - 20470168 20473255 3088 MAPK6P 4 Available data 22480574 22483783 3210 - RP43-047O12_RIKEN                      
ZNF299P   zinc finger-like processed pseudogene 4     - 21124020 21125750 1731 ZNF299P 4 Available data 23117448 23119180 1733 - RP43-164H01_RIKEN                      
EEF1A1P   human elongation factor EF-1-alpha processed pseudogene 4     + 21424471 21425507 1037 EEF1A1P 4 Available data 23374382 23375418 1037 + RP43-110O22_RIKEN                      
TUBAP   alpha tubulin (TUBA2) processed pseudogene 4     - 21441679 21443420 1742 TUBAP 4 Available data 23392934 23394675 1742 - RP43-110O22_RIKEN                      
RPL13AP7 RPL13AP ribosomal protein RPL13A pseudogene 4     + 23396029 23397141 1113 RPL13ALK1 3 Available data 25190421 25191556 1136 + PTB-031J04_RIKEN                      
C21orf42   Homo sapiens C21orf42 protein mRNA, complete cds 1 AY035382 AY035383 Available data - 23420031 23465905 45875 C21orf42 1 Available data 25214470 25260311 45842 - PTB-031J04_RIKEN   2-way alignments AY035382 (81 aa/81 aa)
AY035383 (81 aa/81 aa)		 98 99 98 Protein motifs        
C21orf71 PRED21 gene of unknown function 1 AF086441 Available data - 23616979 23617428 450 C21orf71 1 Available data 25410941 25411390 450 - RP43-117B17_RIKEN   2-way alignments AF086441 (83 aa/105 aa) 97 97 93 Protein motifs       Stop-codon change;
MRPL39 PRED22, PRED66 mitochondrial ribosomal protein L39 1 AK000458 AF239727 Available data - 23619860 23641685 21826 MRPL39 1 Available data 25413827 25435872 22046 - RP43-117B17_RIKEN Mrpl39
NM_017404 		2-way alignments AK000458 (338 aa/338 aa) 98 98 97 Protein motifs   3-way alignment multiple-way alignment  
JAM2 C21orf43 junctional adhesion molecule 2 1 AF255910 AY016009 BC017779 Available data + 23673792 23749126 75335 JAM2 § 1 Available data 25468040 25543603 75564 + PTB-082I14_RIKEN, RP43-117B17_RIKEN Full length cDNA
AF255911 		2-way alignments AF255910 (294 aa/294 aa)
AY016009 (294 aa/294 aa)
BC017779 (294 aa/294 aa)		 99 99 100 Protein motifs   3-way alignment    
FDXP2   adrenodoxin pseudogene 4     + 23727343 23727884 542 FDXP2 4 Available data 25521813 25522357 545 + PTB-082I14_RIKEN                      
ATP5J ATP5A mitochondrial ATPase coupling factor 6 subunit 1 AL110183 M73031 M37104 Available data - 23758703 23769129 10427 ATP5J ¦ 1 Available data 25553188 25563621 10434 - PTB-082I14_RIKEN Atp5a1
U77128 		2-way alignments AL110183 (108 aa/108 aa)
M37104 (108 aa/108 aa)
M73031 (108 aa/108 aa)		 98 98 98 Protein motifs   3-way alignment multiple-way alignment  
GABPA E4TF1-60, E4TF-60, E4TF1A human nuclear respiratory factor-2 subunit alpha 1 D13318 U13044 Available data + 23769616 23803855 34240 GABPA § 1 Available data 25564108 25598653 34546 + PTB-082I14_RIKEN Gabpa
NM_008065 		2-way alignments D13318 (454 aa/454 aa)
U13044 (454 aa/454 aa)		 99 99 100 Protein motifs   3-way alignment multiple-way alignment  
APP A4, Beta-APP, AD1, CVAP amyloid A4 precursor of Alzheimer's disease 1 Y00264 A02759 A31584 A33292 A33293 A33293 E02400 M18734 M33112 X06989 Available data - 23914527 24204977 290451 APP 1 Available data 25709735 25995076 285342 - PTB-155J22_KRIBB, RP43-093B21_KRIBB, RP43-160M11_KRIBB App
NM_007471 		2-way alignments A02759 (695 aa/695 aa)
A31584 (770 aa/770 aa)
A33292 (695 aa/695 aa)
A33293 (751 aa/751 aa)
E02400 (770 aa/770 aa)
M18734 (264 aa/264 aa)
X06989 (751 aa/751 aa)
Y00264 (695 aa/695 aa)		 98.88888889 99 99.5 Protein motifs   3-way alignment multiple-way alignment  
C21orf118 PRED85 B lymphocyte activation-related protein BC-1514 mRNA, complete cds 1 AF304442 Available data + 24252124 24253637 1514 C21orf118 1 Available data 26044502 26046016 1515 + PTB-155J22_KRIBB   2-way alignments AF304442 (130 aa/35 aa) 98           multiple-way alignment Stop-codon change;
C21orf79 PRED24 homolog to a Homo sapiens mRNA, gene similar to MARCKS (AL117624) 3   Available data + 24261909 24268437 6529 C21orf79 3 Available data 26054276 26060847 6572 + PTB-155J22_KRIBB   2-way alignments AL117624 (84 aa/38 aa) 98             Stop-codon change;
MACSL1   pseudogene for HUMKCS 4     - 24269052 24270125 1074 MACSL1 4 Available data 26061462 26062550 1089 - PTB-155J22_KRIBB                      
CYYR1   cysteine and tyrosine-rich protein 1 mRNA, complete cds 1 AF401639 AK054581 AY061853 Available data - 24500560 24607495 106936 CYYR1 1 Available data 26290663 26397836 107174 - PTB-029N08_KRIBB, RP43-017N02_KRIBB, RP43-018H16_KRIBB Cyyr1
NM_144853 		2-way alignments AF401639 (154 aa/154 aa)
AK054581 (262 aa/262 aa)
AY061853 (154 aa/154 aa)		 99 99 98 Protein motifs   3-way alignment    
RPLP1
chr.15		   ribosomal protein, large, P1   NM_001003           RPLP1LK1 3 Available data 26390907 26391416 510 + RP43-018H16_KRIBB                      
ADAMTS1 METH1 metalloproteinase with thrombospondin type 1 motifs 1 AF170084 AF060152 AF207664 Available data - 24870498 24879607 9110 ADAMTS1 1 Available data 26655879 26664992 9114 - RP43-022K21_KRIBB Adamts1
NM_009621 		2-way alignments AF060152 (967 aa/967 aa)
AF170084 (967 aa/967 aa)
AF207664 (967 aa/967 aa)		 99 99 99 Protein motifs   3-way alignment multiple-way alignment  
ADAMTS5 ADAMTS11 aggrecanase-2 mRNA 1 AF142099 Available data - 24955655 25000724 45070 ADAMTS5 1 Available data 26741120 26786360 45241 - PTB-042D04_KRIBB, RP43-022K21_KRIBB Adamts5
AF140673 		2-way alignments AF142099 (930 aa/275 aa)
NM_007038 (930 aa/275 aa)		 99         3-way alignment multiple-way alignment  
GPXP2   human glutathione peroxidase (GPXP2) pseudogene 4     - 25177334 25178278 945 GPXP2 4 Available data 26962923 26963863 941 - RP43-036K01_KRIBB                      
EIF4A1P   eukaryotic initiation factor 4AI pseudogene 4     - 25401223 25402162 940 EIF4A1P 4 Available data 27187588 27188526 939 - RP43-057N15_KRIBB                      
RPL10P1 RPL10P 60S ribosomal protein L10 pseudogene 4     - 25454502 25455274 773 RPL10P1 4 Available data 27240763 27241535 773 - RP43-057N15_KRIBB                      
D21S2073   KIAA0253 pseudogene 4     + 25526348 25527150 803 D21S2073 4 Available data 27312733 27313537 805 + PTB-004I03_KRIBB                      
C21orf23   spliced partial mRNA 2 spliced ESTs AI796012 AI793052 AI261615 AI765751 AI793228 AW290999 BF434914 AI631963 AW237689 AW294047 Available data + 25756590 25785444 28855 C21orf23 2 Available data 27546731 27575878 29148 + PTB-057K02_KRIBB   2-way alignments AI793052 (60 aa/60 aa)
AW290999 (60 aa/60 aa)		 98 97 93 Protein motifs        
C21orf94   chromosome 21 open reading frame 94 (C21orf94), mRNA 1 NM_145180 Available data + 26047593 26057165 9573 C21orf94 1 Available data 27837669 27847218 9550 + RP43-010G23_KRIBB   2-way alignments NM_145180 (62 aa/62 aa) 97 96 91 Protein motifs        
C21orf100   chromosome 21 open reading frame 100 (C21orf100), mRNA 1 AY063458 AY063459 NM_145033   + 26573532 26574569 1038 C21orf100 1 Available data 28360757 28361793 1037 + RP43-094M15_CHGC   2-way alignments AY063458 (55 aa/55 aa)
AY063459 (55 aa/55 aa)
NM_145033 (55 aa/55 aa)		 98 98 98 Protein motifs        
C21orf127 DNMTA1, PRED28 DNA-methyltransferase (adenine-specific) 1, putative (N6-DNA-methyltransferase) 1 AF139682 Available data - 26910367 26919585 9219 C21orf127 1 Available data 28691767 28700951 9185 - RP43-042E01_CHGC N6amt1
AK012019 		2-way alignments AF139682 (214 aa/214 aa) 98 98 96 Protein motifs gtgcg..ttcag/gtgcg..tttag 3-way alignment multiple-way alignment  
HSPDP7   human chaperonin pseudogene 4     - 26921200 26923504 2305 HSPDP7 4 Available data 28702561 28704858 2298 - RP43-042E01_CHGC                      
D21S2085   pseudogene for AK000281 4     - 26933992 26937978 3987 D21S2085 4 Available data 28714796 28718817 4022 - RP43-042E01_CHGC                      
ZNF294 KIAA0714 human mRNA for KIAA0714 protein 1 AB018257 Available data - 26962358 27000743 38386 ZNF294 1 Available data 28743544 28781924 38381 - RP43-042E01_CHGC Znf294
XM_128374 		2-way alignments AB018257 (680 aa/680 aa) 99 99 99 Protein motifs gtagg..tccag/gtagg..tctag 3-way alignment multiple-way alignment  
C21orf98 FLJ11053 Unknown function 1 AK001915 AK023499 Available data - 27000616 27027115 26500 C21orf98 1 Available data 28781797 28808364 26568 - RP43-042E01_CHGC   2-way alignments AK001915 (630 aa/630 aa)
AK023499 (354 aa/354 aa)		 99 99 99 Protein motifs gcaag..tttag/gcaag..tttag      
RPL23P2   60S ribosomal protein L23 pseudogene 4     - 27031781 27032257 477 RPL23P2 4 Available data 28813025 28813500 476 - RP43-042E01_CHGC                      
C21orf6   chromosome 21 open reading frame 6 1 AF212232 AK000056 BC012546 BC017912 Y19009 Available data - 27039971 27053574 13604 C21orf6 1 Available data 28821233 28835123 13891 - RP43-042E01_CHGC ORF5
NM_016924 		2-way alignments AF212232 (319 aa/319 aa)
AK000056 (319 aa/319 aa)
BC012546 (319 aa/319 aa)
BC017912 (319 aa/319 aa)
Y19009 (319 aa/319 aa)		 99 99 99 Protein motifs   3-way alignment multiple-way alignment  
USP16 Ubp-M, MSTP039 ubiquitin processing protease, EC 3.1.2.15. 1 AF113219 AF126736 AK023247 AK025104 Available data + 27058863 27088702 29840 USP16 1 Available data 28840473 28872131 31659 + PTB-083K24_CHGC Usp16
NM_024258 		2-way alignments AF113219 (644 aa/647 aa)
AF126736 (823 aa/826 aa)
AK023247 (644 aa/647 aa)
AK025104 (822 aa/825 aa)		 98.5 99 99 Protein motifs   3-way alignment multiple-way alignment 3 aa insertion;
CCT8 CCT-THETA, CCTQ, KIAA0002, TCP-1-THETA T-complex protein 1, theta subunit 1 BC012584 D13627 Available data - 27090538 27106431 15894 CCT8 ¦ 1 Available data 28873991 28891329 17339 - PTB-083K24_CHGC Cct8
NM_009840 		2-way alignments BC012584 (497 aa/497 aa)
D13627 (380 aa/380 aa)		 99 99 99 Protein motifs gcaag..tttag/gcaag..tttag 3-way alignment multiple-way alignment  
C21orf112 PRED71 exon prediction supported by unspliced ESTs 3 unspliced EST BF694301 Available data + 27106024 27106485 462 C21orf112 ¦ 3 Available data 28890922 28891479 558 + PTB-083K24_CHGC   2-way alignments BF694301 (149 aa/149 aa)
GenScan160-2 (97 aa/180 aa)		 99 99 97 Protein motifs        
C21orf7   putative gene, TGF-beta-activated kinase like 1 AF269161 AF269162 AF269163 AF269164 AY033900 Available data + 27110429 27208676 98248 C21orf7 1 Available data 28895339 28996828 101490 + PTB-083K24_CHGC, PTB-086M04_CHGC C21orf7
NM_144854 		2-way alignments AF269161 (242 aa/242 aa)
AF269162 (138 aa/138 aa)
AF269163 (145 aa/145 aa)
AF269164 (142 aa/142 aa)
AY033900 (142 aa/142 aa)		 99 99 99 Protein motifs gtaat..catag/gtgat..catag 3-way alignment multiple-way alignment  
RPL12P9 RL12_HUMAN_71 ribosomal protein L12 pseudogene 9 4     - 27160445 27161052 608 RPL12P9 4 Available data 28948543 28949150 608 - RP43-154K22_CHGC, PTB-086M04_CHGC                      
C21orf109   Homo sapiens chromosome 21 open reading frame 109 (C21orf109) mRNA, complete cds 1 AF490769 Available data + 27226269 27320994 94726 C21orf109 ¶§ 1 Available data 29014336 29111823 97488 + PTB-016G04_CHGC, PTB-086M04_CHGC   2-way alignments AF490769 (51 aa/51 aa) 100 100 100 Protein motifs gtaag..tatag/gtaag..tacag      
GAPDP14   glycerinaldehyde-3-phosphate dehydrogenase pseudogene 4     + 27255065 27256255 1191 GAPDP14 4 Available data 29043137 29044327 1191 + PTB-086M04_CHGC                      
BACH1   transcription regulator protein 1 AB002803 AF026199 Available data + 27331684 27378774 47091 BACH1 1 Available data 29122477 29170505 48029 + PTB-016G04_CHGC Bach1
NM_007520 		2-way alignments AB002803 (736 aa/736 aa)
AF026199 (736 aa/736 aa)		 99 99 99 Protein motifs   3-way alignment multiple-way alignment  
C21orf12   spliced partial mRNA (trapped exon) 2 spliced EST R82144 Available data - 27402809 27404015 1207 C21orf12 2 Available data 29194499 29195699 1201 - PTB-016G04_CHGC   2-way alignments   97       gtagg..cccag/gttgt..ttgca      
C21orf8   spliced partial mRNA 2 spliced EST AA843704 Available data + 27528869 27533171 4303 C21orf8 2 Available data 29320652 29324951 4300 + PTB-258K22_CHGC   2-way alignments AA843704 (37 aa/37 aa) 99 98 94 Protein motifs        
GRIK1 GLUR5, GLR5, GLR-5 human glutamate receptor (GLUR5) 1 L19058 Available data - 27569991 27972698 402708 GRIK1 § 1 Available data 29361788 29738405 376618 - PTB-091H17_CHGC, PTB-137B16_CHGC, RP43-006O21_CHGC Grik1
X66118 		2-way alignments AJ249208 (905 aa/905 aa)
L19058 (918 aa/918 aa)		 99 99 100 Protein motifs gcaag..cacag/gcaag..cacag 3-way alignment    
C21orf41   Homo sapiens C21ORF41 (C21ORF41) mRNA, complete cds 1 AY081145 Available data + 27628828 27663535 34708 C21orf41 ¶§ 1 Available data 29419653 29454372 34720 + PTB-137B16_CHGC   2-way alignments AY081145 (40 aa/40 aa) 98 100 100 Protein motifs        
C21orf9   Homo sapiens clone qa81f10 C21ORF9 (C21orf9) mRNA, complete cds 1 AY077697 Available data + 27781725 27796779 15055 C21orf9 1 Available data 29569710 29584804 15095 + PTB-091H17_CHGC   2-way alignments AY077697 (36 aa/29 aa) 99     Protein motifs       Methionine change;
CLDN17 Claudin-17 human CLDN17 gene for claudin-17 1 AJ250712 Available data - 28198729 28199403 675 CLDN17 1 Available data 29965451 29966125 675 - PTB-118H03_CHGC   2-way alignments AJ250712 (224 aa/224 aa) 99 99 98 Protein motifs     multiple-way alignment  
CLDN8 Claudin-8 human CLDN8 gene for claudin-8 1 AJ250711 AK022269 BC020866 Available data - 28246793 28248859 2067 CLDN8 1 Available data 30014489 30016557 2069 - PTB-118H03_CHGC, RP43-042C06_CHGC Cldn8
NM_018778 		2-way alignments AJ250711 (225 aa/225 aa)
AK022269 (225 aa/225 aa)
BC020866 (225 aa/225 aa)		 98 99 99 Protein motifs   3-way alignment multiple-way alignment  
RPL8P2   pseudogene for BC000047 4     - 28296124 28296667 544 RPL8P2 4 Available data 30063887 30064430 544 - RP43-042C06_CHGC                      
KRTAP23-1   human hair keratin-associated protein 23.1 1   Available data - 28381185 28381392 208 KRTAP23-1 1 Available data 30148900 30149102 203 - RP43-082J09_CHGC RP43-042C06_CHGC   2-way alignments (65 aa/64 aa) 98             Methionine change;
KRTAP13P2 KRTAP13B human hair keratin-associated pseudogene 4     - 28389560 28389660 101 KRTAP13P2 4 Available data 30157288 30157388 101 - RP43-082J09_CHGC RP43-042C06_CHGC                      
KRTAP13-2   human hair keratin-associated protein 13.2 1   Available data - 28404472 28404999 528 KRTAP13-2 1 Available data 30172158 30172685 528 - RP43-082J09_CHGC   2-way alignments (175 aa/175 aa) 98 98 97 Protein motifs        
KRTAP13-1   human hair keratin-associated protein 13.1 1 AJ457066 Available data + 28428992 28429608 617 KRTAP13-1 1 Available data 30196848 30197464 617 + RP43-082J09_CHGC   2-way alignments AJ457066 (132 aa/132 aa) 98 98 98 Protein motifs     multiple-way alignment  
KRTAP13-3   human hair keratin-associated protein 13.3 1   Available data - 28458179 28458698 520 KRTAP13-3             genomic gap                      
KRTAP13-4   human hair keratin-associated protein 13.4 1   Available data + 28463062 28463544 483 KRTAP13-4             genomic gap                      
KRTAP13P1 KRTAP13A human hair keratin-associated pseudogene 4     - 28469440 28469739 300 KRTAP13P1 4 Available data 30212915 30213207 293 - RP43-082J09_CHGC                      
KRTAP15-1   human hair keratin-associated protein 15.1 1   Available data + 28473114 28473566 453 KRTAP15-1 1 Available data 30216582 30217034 453 + RP43-082J09_CHGC   2-way alignments (137 aa/71 aa) 98           multiple-way alignment Stop-codon change;
KRTAP19-1   human hair keratin-associated protein 19.1 1 AJ457067 Available data - 28512486 28513100 615 KRTAP19-1 1 Available data 30253876 30254494 619 - RP43-082J09_CHGC   2-way alignments AJ457067 (88 aa/88 aa) 97 98 95 Protein motifs     multiple-way alignment  
KRTAP19-2   human hair keratin-associated protein 19.2 1   Available data - 28519977 28520135 159 KRTAP19-2             genomic gap                      
KRTAP19-3   human hair keratin-associated protein 19.3 1   Available data - 28524496 28524743 248 KRTAP19-3 1 Available data 30259910 30260157 248 - RP43-082J09_CHGC   2-way alignments (81 aa/81 aa) 95 97 98 Protein motifs        
KRTAP19-4   human hair keratin-associated protein 19.4 1   Available data - 28529642 28529896 255 KRTAP19-4 1 Available data 30265081 30265337 257 - RP43-082J09_CHGC   2-way alignments (84 aa/63 aa) 97             Stop-codon change;
KRTAP19-5   human hair keratin-associated protein 19.5 1   Available data - 28534658 28534876 219 KRTAP19-5 § 1 Available data 30270068 30270286 219 - RP43-082J09_CHGC   2-way alignments (72 aa/72 aa) 99 99 100 Protein motifs        
KRTAP19P1 KRTAP19A human hair keratin-associated pseudogene 4     - 28543072 28543274 203 KRTAP19P1 4 Available data 30278483 30278685 203 - RP43-082J09_CHGC                      
KRTAP19P2 KRTAP19B human hair keratin-associated pseudogene 4     - 28547365 28547616 252 KRTAP19P2 4 Available data 30282756 30283007 252 - RP43-082J09_CHGC                      
KRTAP19P3 KRTAP19C human hair keratin-associated pseudogene 4     - 28569964 28570194 231 KRTAP19P3 4 Available data 30305326 30305558 233 - RP43-184I13_CHGC                      
KRTAP19-6   human hair keratin-associated protein 19.6 1   Available data - 28574444 28574620 177 KRTAP19-6             genomic gap                      
KRTAP19-7   human hair keratin-associated protein 19.7 1   Available data - 28593885 28594076 192 KRTAP19-7             genomic gap                      
KRTAP6-3   human hair keratin-associated protein 6.3 1   Available data + 28625253 28625565 313 KRTAP6-3 1 Available data 30334711 30334993 283 + RP43-184I13_CHGC   2-way alignments (103 aa/93 aa) 83              
KRTAP6-2   human hair keratin-associated protein 6.2 1   Available data - 28631473 28631661 189 KRTAP6-2 1 Available data 30341687 30341875 189 - RP43-184I13_CHGC   2-way alignments (62 aa/62 aa) 96 98 98 Protein motifs        
KRTAP22-1   human hair keratin-associated protein 22.1 1   Available data + 28633908 28634054 147 KRTAP22-1 1 Available data 30344133 30344279 147 + RP43-184I13_CHGC   2-way alignments (48 aa/48 aa) 97 97 97 Protein motifs        
KRTAP6-1 C21orf103 human hair keratin-associated protein 6.1 1   Available data - 28646180 28646693 514 KRTAP6-1 1 Available data 30356397 30356909 513 - RP43-184I13_CHGC   2-way alignments (71 aa/71 aa) 98 98 98 Protein motifs        
KRTAP20-1   human hair keratin-associated protein 20.1 1   Available data + 28649242 28649412 171 KRTAP20-1 1 Available data 30359458 30359628 171 + RP43-184I13_CHGC   2-way alignments (56 aa/56 aa) 98 98 98 Protein motifs        
KRTAP20-2   human hair keratin-associated protein 20.2 1   Available data + 28668051 28668248 198 KRTAP20-2 1 Available data 30378284 30378481 198 + RP43-184I13_CHGC   2-way alignments (65 aa/65 aa) 98 98 95 Protein motifs        
KRTAP19P4 KRTAP19D human hair keratin-associated pseudogene 4     + 28675676 28675810 135 KRTAP19P4 4 Available data 30385905 30386039 135 + RP43-184I13_CHGC                      
KRTAP21P1 KRTAP21A human hair keratin-associated pseudogene 4     - 28774566 28775399 834 KRTAP21P1 4 Available data 30484622 30490454 5833 - PTB-020H02_RIKEN                      
KRTAP21-2   human hair keratin-associated protein 21.2 1   Available data - 28779737 28779988 252 KRTAP21-2 1 Available data 30490281 30490562 282 - PTB-020H02_RIKEN   2-way alignments (83 aa/83 aa) 93 93 89 Protein motifs        
KRTAP21-1   human hair keratin-associated protein 21.1 1   Available data - 28787925 28788164 240 KRTAP21-1 1 Available data 30498483 30498752 270 - PTB-020H02_RIKEN   2-way alignments (79 aa/79 aa) 94 94 89 Protein motifs     multiple-way alignment  
KRTAP8P1 KRTAP8A human hair keratin-associated pseudogene 4     - 28835028 28835150 123 KRTAP8P1 4 Available data 30545737 30545859 123 - PTB-020H02_RIKEN                      
KRTAP8P2 KRTAP8B human hair keratin-associated pseudogene 4     - 28839775 28839885 111 KRTAP8P2 4 Available data 30550482 30550592 111 - PTB-020H02_RIKEN                      
KRTAP8-1   human hair keratin-associated protein 8.1 1 AJ457064 Available data - 28845480 28846038 559 KRTAP8-1 ¶§ 1 Available data 30556161 30556723 563 - PTB-020H02_RIKEN   2-way alignments AJ457064 (63 aa/63 aa) 98 100 100 Protein motifs     multiple-way alignment  
KRTAP7-1   human hair keratin-associated protein 7.1 1 AJ457063 Available data - 28861825 28862395 571 KRTAP7-1 1 Available data 30572547 30573117 571 - PTB-237C02_RIKEN   2-way alignments AJ457063 (57 aa/57 aa) 99 98 96 Protein motifs        
KRTAP11-1 PRED29 human hair keratin-associated protein 11.1 1   Available data - 28913432 28914404 973 KRTAP11-1 1 Available data 30622132 30623104 973 - PTB-237C02_RIKEN hacl-1
U03686 		2-way alignments AJ457065 (163 aa/163 aa) 98 98 98 Protein motifs   3-way alignment multiple-way alignment  
UBE3AP2   ubiquitin protein ligase, processed pseudogene 4     - 29093364 29095964 2601 UBE3AP2 4 Available data 30802526 30805138 2613 - PTB-090P24_RIKEN, RP43-150L08_RIKEN                      
TIAM1   human T-lymphoma invasion and metastasis inducing TIAM1 protein 1 U16296 Available data - 29152958 29591767 438810 TIAM1 1 Available data 30864662 31304062 439401 - PTB-090P24_RIKEN, PTB-093K04_RIKEN, RP43-098E13_RIKEN Tiam1
NM_009384 		2-way alignments U16296 (1591 aa/1591 aa) 99 99 99 Protein motifs gtatg..cccag/gtacg..cccag 3-way alignment multiple-way alignment  
D21S2086 PRED31 pseudogene for AF151064 4     + 29485242 29486073 832 D21S2086 4 Available data 31198020 31198850 831 + RP43-076J24_RIKEN                      
FBXW1BP   pseudogene for AB014596 4     - 29656742 29661390 4649 FBXW1BP 4 Available data 31370066 31374683 4618 - RP43-098E13_RIKEN                      
FBXW1BP1 BTRC2P pseudogene similar to BTRC 4     - 29659413 29661390 1978 FBXW1BP1 4 Available data 31372730 31374683 1954 - RP43-098E13_RIKEN                      
SOD1 ALS, ALS1 Cu/Zn superoxide dismutase, EC 1.15.1.1. 1 E00882 E06743 E06789 M13267 X02317 Available data + 29692353 29701663 9311 SOD1 §¦ 1 Available data 31408261 31416210 7950 + RP43-098E13_RIKEN, RP43-168A22_RIKEN Sod1
M35725 		2-way alignments E00882 (154 aa/154 aa)
E06743 (154 aa/154 aa)
E06789 (154 aa/154 aa)
M13267 (154 aa/154 aa)
X02317 (154 aa/154 aa)		 99 99 100 Protein motifs gcaag..taaag/gcaag..taaag 3-way alignment    
SFRS15 CTDBP, CTBP2, rA4 pre-mRNA splicing SR protein rA4 1 AB032998 AF023142 AK025748 AL117417 HSM805342 Available data - 29703740 29764638 60899 SFRS15 1 Available data 31418282 31479910 61629 - RP43-098E13_RIKEN, RP43-168A22_RIKEN Ctdbp
XM_128369 		2-way alignments AB032998 (925 aa/925 aa)
AF023142 (1156 aa/1156 aa)
AK025748 (940 aa/940 aa)
AL117417 (527 aa/526 aa)
HSM805342 (1193 aa/1193 aa)		 99 99 99.6 Protein motifs   3-way alignment    
HMG14P   nonhistone chromosomal protein HMG-14 pseudogene 4     + 29739233 29739921 689 HMG14P 4 Available data 31454482 31455175 694 + RP43-168A22_RIKEN                      
TPT1P   pseudogene for X16064 4     + 29872987 29873803 817 TPT1P 4 Available data 31588242 31589055 814 + PTB-118B22_IMB, PTB-419O23_IMB                      
HUNK PRED33 hormonally upregulated Neu-associated kinase 1 AJ271722 Available data + 29906055 30036804 130750 HUNK 1 Available data 31622500 31752351 129852 + PTB-083P20_IMB, PTB-118B22_IMB, PTB-419O23_IMB Hunk
AF167987 		2-way alignments AJ271722 (714 aa/714 aa) 98 99 99 Protein motifs gtaag..tgtag/gtaag..tgcag 3-way alignment multiple-way alignment  
HNRPA1
chr.12		   heterogeneous nuclear ribonucleoprotein A1   NM_002136           HNRPA1LK1 ¦ 3 Available data 31680423 31681781 1359 + PTB-118B22_IMB                      
C21orf44   spliced partial mRNA 2 spliced ESTs AW138869 AI867145 Available data + 30113051 30230553 117503 C21orf44 2 Available data 31829640 31946483 116844 + PTB-083P20_IMB   2-way alignments   97.5       gtgag..agcag/atgag..agcag      
C21orf45   gene of unknown function 1 AF231921 AF387845 Available data - 30301691 30311776 10086 C21orf45 1 Available data 32017002 32027060 10059 - RP43-046M07_IMB Full length cDNA
AK012533 		2-way alignments AF231921 (233 aa/233 aa)
AF387845 (233 aa/232 aa)		 98 99 99 Protein motifs   3-way alignment multiple-way alignment 1 aa deletion;
C21orf61   Homo sapiens C21orf61 short form mRNA, complete cds 1 AF454915 AF454916 Available data + 30324552 30345021 20470 C21orf61 1 Available data 32039961 32060461 20501 + RP43-046M07_IMB 1110025G12Rik
BC027543 		2-way alignments AF454915 (172 aa/172 aa)
AF454916 (113 aa/113 aa)		 98 98.5 98 Protein motifs     multiple-way alignment  
C21orf108 KIAA0539 human mRNA for KIAA0539 protein 1 AB011111 AF231919 Available data - 30343758 30425578 81821 C21orf108 1 Available data 32059195 32140824 81630 - PTB-126B09_IMB, PTB-375M11_IMB, RP43-046M07_IMB 5730405K23Rik
AK017495 		2-way alignments AB011111 (2046 aa/2046 aa)
AF231919 (2248 aa/2248 aa)		 98 98 98 Protein motifs gtaac..tgcag/gtaac..tgtag 3-way alignment multiple-way alignment  
C21orf119 PRED84 hypothetical protein MGC14136 (MGC14136), mRNA 1 NM_032910 Available data + 30425867 30426697 831 C21orf119 1 Available data 32141078 32141899 822 + PTB-375M11_IMB PTB-126B09_IMB   2-way alignments NM_032910 (61 aa/61 aa) 98 97 93 Protein motifs        
C21orf63 PRED34 Homo sapiens C21orf63 isoform B rotein (C21orf63) mRNA, complete cds 1 AF358258 AY040087 Available data + 30445590 30547928 102339 C21orf63 1 Available data 32160920 32262694 101775 + PTB-126B09_IMB, PTB-375M11_IMB Full length cDNA
AK016443 		2-way alignments AF358258 (441 aa/441 aa)
AY040087 (70 aa/70 aa)		 99 99 98 Protein motifs   3-way alignment multiple-way alignment  
C21orf47   unspliced partial mRNA 3 unspliced EST H51284 Available data - 30581814 30582230 417 C21orf47 3 Available data 32296592 32297008 417 - PTB-126B09_IMB   2-way alignments H51284 (50 aa/50 aa) 99 98 95 Protein motifs        
C21orf77   unknown function 1 AK001794 BC027970 Available data - 30604977 30609029 4053 C21orf77 1 Available data 32320875 32324927 4053 - PTB-126B09_IMB   2-way alignments AK001794 (126 aa/126 aa)
BC027970 (126 aa/126 aa)		 98 97 96 Protein motifs        
TCP10L PRED77 Homo sapiens cDNA FLJ25349 fis, clone TST01443 1 AF115967 AK058078 BC022024 Available data - 30609290 30618271 8982 TCP10L 1 Available data 32325189 32333830 8642 - PTB-126B09_IMB   2-way alignments AF115967 (215 aa/217 aa)
AK058078 (215 aa/217 aa)
BC022024 (215 aa/217 aa)		 98 97 91 Protein motifs gtgac..ttcag/gtaaa..ttcag     Complex change;
C21orf59 TCP10L gene similar to TCP10, spliced ESTs AA465232/T18865 1 AF282851 AK000474 AK055328 BC000709 Available data - 30634523 30645341 10819 C21orf59 1 Available data 32350402 32362384 11983 - RP43-012J05_MOLGEN Full length cDNA
AK018510 		2-way alignments AF282851 (290 aa/290 aa)
AK000474 (138 aa/138 aa)
AK055328 (245 aa/245 aa)
BC000709 (290 aa/290 aa)		 98 98.75 98.75 Protein motifs cgcgg..gtacc/cgcgg..gtacc 3-way alignment multiple-way alignment  
OR7E92P   pseudogene for Y10529 4     + 30654005 30654833 829 OR7E92P             genomic gap                      
SYNJ1   synaptojanin-1, polyphosphoinositide phosphatase 1 AF009040 Available data - 30663728 30759658 95931 SYNJ1 1 Available data 32373840 32468679 94840 - RP43-012J05_MOLGEN   2-way alignments AF009040 (1573 aa/1575 aa) 99 99 99 Protein motifs gtaaa..ttaag/gtaaa..tttag 3-way alignment multiple-way alignment  
C21orf66 GCFC human GC-rich sequence DNA-binding factor candidate 1 AF231920 AY033903 AY033905 AY033906 BC030539 HSA279080 HSA279081 AF153208 AY033904 Available data - 30767559 30804531 36973 C21orf66 1 Available data 32476590 32513504 36915 - PTB-034G05_MOLGEN, RP43-012J05_MOLGEN Full length cDNA
AK011477 		2-way alignments AF153208 (247 aa/250 aa)
AF231920 (786 aa/786 aa)
AY033903 (917 aa/917 aa)
AY033904 (815 aa/816 aa)
AY033905 (469 aa/469 aa)
AY033906 (511 aa/511 aa)
BC030539 (398 aa/398 aa)
HSA279080 (917 aa/917 aa)
HSA279081 (511 aa/511 aa)		 99 99 99 Protein motifs gtacg..tctag/gtaag..tctag gtaaa..gggaa/gtaaa..gggaa 3-way alignment multiple-way alignment Stop-codon change (AF153208 AY033904);
C21orf49   spliced partial mRNA 2 spliced ESTs T19019 AA361369 AV655412 Available data + 30804839 30831717 26879 C21orf49 2 Available data 32513690 32540608 26919 + PTB-034G05_MOLGEN   2-way alignments AA361369 (28 aa/28 aa)
AV655412 (60 aa/60 aa)
T19019 (45 aa/45 aa)		 97.83333333 98 98 Protein motifs gtagg..ttcag/gtgga..ttcag      
C21orf120 PRED81 clone MGC:10954 IMAGE:3632392, mRNA, complete cds 1 BC004959 Available data - 30823412 30823905 494 C21orf120 ¶§ 1 Available data 32532274 32532767 494 - PTB-034G05_MOLGEN   2-way alignments BC004959 (21 aa/21 aa) 98 100 100 Protein motifs        
C21orf62   unknown function 1 AF231922 Available data - 30826303 30846386 20084 C21orf62 1 Available data 32535166 32555240 20075 - PTB-034G05_MOLGEN Full length cDNA
AK016554 		2-way alignments AF231922 (247 aa/219 aa) 99 98 90 Protein motifs   3-way alignment multiple-way alignment Stop-codon change;
PRED36   exon prediction only 3   Available data + 30846342 30852112 5771 PRED36 3 Available data 32555196 32560969 5774 + PTB-034G05_MOLGEN   2-way alignments S12-model2-riken (92 aa/92 aa) 99 99 98 Protein motifs        
OLIG2 PRKCBP2, RACK17 human protein kinase C-binding protein RACK17 1 AF221520 U48250 Available data + 31058720 31061928 3209 OLIG2 1 Available data 32769200 32772411 3212 + RP43-040C07_MOLGEN, RP43-043L10_MOLGEN Olig2
NM_016967 		2-way alignments AF221520 (323 aa/323 aa)
U48250 (321 aa/321 aa)		 98 99 99.5 Protein motifs   3-way alignment multiple-way alignment  
OLIG1 OLIGO1 homolog to a Mus musculus mRNA, Oligo1 bHLH protein (AB038696) 1 BC026989 Available data + 31102893 31105153 2261 OLIG1 1 Available data 32813308 32815580 2273 + RP43-040C07_MOLGEN Olig1
AB038696 		2-way alignments AB038696 (263 aa/263 aa)
BC026989 (255 aa/256 aa)		 98.5 98 98 Protein motifs   3-way alignment multiple-way alignment  
C21orf54   spliced partial mRNA 2 spliced ESTs AA934973 AA400147 AA400173 AA868122 Available data - 31198203 31202921 4719 C21orf54 2 Available data 32907131 32911461 4331 - PTB-026G12_MOLGEN, RP43-034B14_MOLGEN   2-way alignments AA400147 (88 aa/88 aa)
AA400173 (108 aa/- aa)
AA868122 (96 aa/96 aa)
AA934973 (95 aa/95 aa)		 98 98 96 Protein motifs gtgaa..tccag/gtgaa..tccgg      
MGC10198
chr.4		   hypothetical protein   NM_152682           FAM28ALK1 3 Available data 32934790 32937332 2543 + PTB-026G12_MOLGEN, RP43-034B14_MOLGEN                      
IFNAR2 IFNARB human interferon alpha/beta receptor 1 X77722 A45964 L41942 L41944 X89772 Available data + 31262706 31297257 34552 IFNAR2 1 Available data 32973996 33008539 34544 + RP43-034B14_MOLGEN, PTB-026G12_MOLGEN, PTB-196A08_MOLGEN Ifnar2
NM_010509 		2-way alignments A45964 (331 aa/331 aa)
L41942 (515 aa/516 aa)
L41944 (331 aa/331 aa)
X77722 (331 aa/331 aa)
X89772 (515 aa/516 aa)		 98.4 99 98.4 Protein motifs gtaac..tgcag/gtaac..tgcaa gcaag..aacag/gtaag..aacag gtacg..tcaag/gtatg..tcaag 3-way alignment   1 aa insertion (L41942, X89772);
IL10RB CRFB4, Hs.46437 human transmembrane receptor protein; cytokine receptor 1 BC001903 Z17227 Available data + 31299113 31329947 30835 IL10RB 1 Available data 33010389 33038158 27770