est2genome alignments of the FEM1DP cDNAs to the chimpanzee clone PTB-084L06
Note Best alignment is between forward est and forward genome, and splice sites imply forward gene
Exon 2182 97.2 21683 24012 PTB-084L06 1 2314 hsa21-FEM1DP
Span 2182 97.2 21683 24012 PTB-084L06 1 2314 hsa21-FEM1DP
Segment 329 98.2 21683 22023 PTB-084L06 1 341 hsa21-FEM1DP
Segment 102 99.0 22024 22127 PTB-084L06 343 446 hsa21-FEM1DP
Segment 1 100.0 22131 22131 PTB-084L06 447 447 hsa21-FEM1DP
Segment 1 100.0 22136 22136 PTB-084L06 448 448 hsa21-FEM1DP
Segment 360 97.4 22145 22524 PTB-084L06 449 828 hsa21-FEM1DP
Segment 440 98.7 22525 22976 PTB-084L06 830 1281 hsa21-FEM1DP
Segment 821 97.8 22979 23837 PTB-084L06 1282 2140 hsa21-FEM1DP
Segment 168 98.3 23839 24012 PTB-084L06 2141 2314 hsa21-FEM1DP
PTB-084L06 vs hsa21-FEM1DP:
PTB-084L06 21683 CAAAGGGGTCTGGGAAGTGGAAGGGGCCCTGCAGCTCCTCAGGGAGCCTA 21732
|||||||||| ||||||||||| ||||||||||||| |||||||||||||
hsa21-FEM1DP 1 CAAAGGGGTCCGGGAAGTGGAATGGGCCCTGCAGCTGCTCAGGGAGCCTA 50
PTB-084L06 21733 CAGACTCGGCCCAGTTCAACAAGGCGCTGGCCATCATCCTCCACCTGCTC 21782
|||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 51 GAGACTCGGCCCAGTTCAACAAGGCGCTGGCCATCATCCTCCACCTGCTC 100
PTB-084L06 21783 TACCTGCTGGAGAAAGTGGAGTGCACCCCCAGCCAGGAGCACCTGAAGCA 21832
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 101 TACCTGCTGGAGAAAGTGGAGTGCACCCCCAGCCAGGAGCACCTGAAGCA 150
PTB-084L06 21833 CCAGACCATTTACCGCCTGCTCAAGTGCGCACCCAGGGGCAAGAACGGCT 21882
||||||||| || |||||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 151 CCAGACCATCTATCGCCTGCTCAAGTGCGCACCCAGGGGCAAGAACGGCT 200
PTB-084L06 21883 TCACGCCTCTGCACATGGCTGTGGACAAGGACACCACAAACGTGGGCCGC 21932
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 201 TCACGCCTCTGCACATGGCTGTGGACAAGGACACCACAAACGTGGGCCGC 250
PTB-084L06 21933 TACCCCGTGGGCAGATTCCCCTCGTTGCACGTGGTCAAAGTGCTGTTCGA 21982
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 251 TACCCCGTGGGCAGATTCCCCTCGTTGCACGTGGTCAAAGTGCTGTTCGA 300
PTB-084L06 21983 CTGCGGGGCCGACCGGGACAGCAGGGATTTTGACAACAACA-CCCGCTAC 22031
||||||||||||||||||||||||||||||||||||||||| ||||||||
hsa21-FEM1DP 301 CTGCGGGGCCGACCGGGACAGCAGGGATTTTGACAACAACACCCCGCTAC 350
PTB-084L06 22032 ACATAGCAGCCCAGAACAACTGCCCGGCCATCGTGAATGCCCTGATTGAA 22081
||||||||||||||||||||||||||||||||||||||||||||| ||||
hsa21-FEM1DP 351 ACATAGCAGCCCAGAACAACTGCCCGGCCATCGTGAATGCCCTGACTGAA 400
PTB-084L06 22082 GCAGGGGCCCACATGGACGCCACCAACGCCTTCAAGAAGACGGCCTACGA 22131
|||||||||||||||||||||||||||||||||||||||||||||| |
hsa21-FEM1DP 401 GCAGGGGCCCACATGGACGCCACCAACGCCTTCAAGAAGACGGCCT---A 447
PTB-084L06 22132 GCTGCTGGAAGAGGAGCTGCTGGAAGAGAAGCTGCTGGCCGGGGGTACCA 22181
| ||||||||||||||||||||||||||| |||||||||
hsa21-FEM1DP 448 ----C--------GAGCTGCTGGAAGAGAAGCTGCTGGCCAGGGGTACCA 485
PTB-084L06 22182 TGCAGCCCTTCAACTATGTGACCCTGCAGTGCCTTGCAGCCCAGGCCCTG 22231
|||||||||||||||| ||||| |||||||||||||||||||||||||||
hsa21-FEM1DP 486 TGCAGCCCTTCAACTACGTGACGCTGCAGTGCCTTGCAGCCCAGGCCCTG 535
PTB-084L06 22232 GATAAGAACAAGATCCCTTACAAGGGCTTCATCCCGGAAGATCTGGAGGC 22281
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 536 GATAAGAACAAGATCCCTTACAAGGGCTTCATCCCGGAAGATCTGGAGGC 585
PTB-084L06 22282 ACTCATGGAACTGCACTGACCTGCCCAGAACATCTGCACCCTCAGCTCTC 22331
| |||| ||||||||||||||||||||||||||||||||||||| |||||
hsa21-FEM1DP 586 ATTCATCGAACTGCACTGACCTGCCCAGAACATCTGCACCCTCACCTCTC 635
PTB-084L06 22332 CCCTCTCCTGCTGAGACGGGGGAAATCAGGCTGGGGTATAGCAGATGCTC 22381
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 636 CCCTCTCCTGCTGAGACGGGGGAAATCAGGCTGGGGTATAGCAGATGCTC 685
PTB-084L06 22382 GTTCTTGCCTCCTTCAGGCAACAATCAGGAGAAGGGTTCTGCCTCCCATC 22431
|||||||||||||||||||| |||||||||||||||||||||||||||||
hsa21-FEM1DP 686 GTTCTTGCCTCCTTCAGGCACCAATCAGGAGAAGGGTTCTGCCTCCCATC 735
PTB-084L06 22432 ACCTTTACCTGAAGACAGGGTCTGAGGTGTTAGCGAGCCTTTGGTGCTAG 22481
|||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 736 CCCTTTACCTGAAGACAGGGTCTGAGGTGTTAGCGAGCCTTTGGTGCTAG 785
PTB-084L06 22482 AAGCCTTCAGGGTCACATGCTAAGAGGACAGTCCTTCTCCGGG-AGCCCA 22530
|||||||||||||||||||| |||||||||||| ||||||||| ||||||
hsa21-FEM1DP 786 AAGCCTTCAGGGTCACATGCCAAGAGGACAGTCTTTCTCCGGGAAGCCCA 835
PTB-084L06 22531 CTGACTCAGAAATTCTGAGTTAGGAAAAGACACAAGACCTTCCCCACATC 22580
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 836 CTGACTCAGAAATTCTGAGTTAGGAAAAGACACAAGACCTTCCCCACATC 885
PTB-084L06 22581 CTGTCTGCCTGGGTTACGGAGGCCTTTGCCTTGTTACCTAGAGGCGGAGG 22630
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 886 CTGTCTGCCTGGGTTACGGAGGCCTTTGCCTTGTTACCTAGAGGCGGAGG 935
PTB-084L06 22631 GACTGAAGCCATTGCGTTCCTTCCCTGCTAGAAACACAGGAAGAAGTTGA 22680
|||||||||||||||||||||||| |||||||||||||||||||||||||
hsa21-FEM1DP 936 GACTGAAGCCATTGCGTTCCTTCCTTGCTAGAAACACAGGAAGAAGTTGA 985
PTB-084L06 22681 GGACGGTCTGCCTTCCCTTGTCCTTTTACATGGCCAGGTAACTCCAGCTG 22730
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 986 GGACGGTCTGCCTTCCCTTGTCCTTTTACATGGCCAGGTAACTCCAGCTG 1035
PTB-084L06 22731 CTCAATACAGTGTTAGGACTGGGGGCTCCTGAGATGAGAGTTTGAAAGTC 22780
|| |||||||||||||||||||||||||| ||||||||||||||||||||
hsa21-FEM1DP 1036 CTGAATACAGTGTTAGGACTGGGGGCTCCCGAGATGAGAGTTTGAAAGTC 1085
PTB-084L06 22781 AGGGAATGAAACCACCTCTCATTTCTTCCAGCATGATCACGACCTGCTCC 22830
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 1086 AGGGAATGAAACCACCTCTCATTTCTTCCAGCATGATCACGACCTGCTCC 1135
PTB-084L06 22831 TGTGCCACCATAGTCCCTGGCAGACTGGCAGGGCTCTGCTCAGGGAAGCC 22880
||||||||||||||||||||||||| ||||||||||||||||||| ||||
hsa21-FEM1DP 1136 TGTGCCACCATAGTCCCTGGCAGACAGGCAGGGCTCTGCTCAGGGCAGCC 1185
PTB-084L06 22881 TGCCACTTGCATAGCTTTTGGTTAGTTTGGTGTTCTGTTTATTTAATAAG 22930
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 1186 TGCCACTTGCATAGCTTTTGGTTAGTTTGGTGTTCTGTTTATTTAATAAG 1235
PTB-084L06 22931 TGGGCAGGTTGCAAGTATTGCACAGGAATTCTGAGATTTTACTGCCTTTT 22980
||||||||||||||| |||||||||||||||||||||||||||||| ||
hsa21-FEM1DP 1236 TGGGCAGGTTGCAAGCATTGCACAGGAATTCTGAGATTTTACTGCC--TT 1283
PTB-084L06 22981 TTTTTTTTTTTTAAAGAAAGTTGTTTGTTGGACTCCGTAAGTGAATTTCA 23030
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 1284 TTTTTTTTTTTTAAAGAAAGTTGTTTGTTGGACTCCGTAAGTGAATTTCA 1333
PTB-084L06 23031 AGCAGTGACGATTTTGTAGTGCCTGAGATGGCTGAGGCCACAGGGAGTGA 23080
|||||||| |||| ||||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 1334 AGCAGTGAGGATTCTGTAGTGCCTGAGATGGCTGAGGCCACAGGGAGTGA 1383
PTB-084L06 23081 GCTGTATGTGTGAGGAAGTTGGTGAGAGAGATAAAAGTCCATGGTTTCGA 23130
|||||||||||||||||||||||||| |||||||||||||||||||||||
hsa21-FEM1DP 1384 GCTGTATGTGTGAGGAAGTTGGTGAGCGAGATAAAAGTCCATGGTTTCGA 1433
PTB-084L06 23131 CCCCTAAAACATGGGTGACTGTACATTTTTATACATCTCCACTCTACGGG 23180
||||||||||||| |||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 1434 CCCCTAAAACATGTGTGACTGTACATTTTTATACATCTCCACTCTACGGC 1483
PTB-084L06 23181 CTTTTACAGGCTTTCCAATTTTACAGGCCTTTCCAATTTTCCATTCTCAT 23230
||||||||||||||||||||||||||||||||||||||||||||| ||||
hsa21-FEM1DP 1484 CTTTTACAGGCTTTCCAATTTTACAGGCCTTTCCAATTTTCCATTATCAT 1533
PTB-084L06 23231 TAGAAAGAGAACTGTGCTTCCAAACAGAAATCAGGAGTGACCACAAAGCC 23280
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 1534 TAGAAAGAGAACTGTGCTTCCAAACAGAAATCAGGAGTGACCACAAAGCC 1583
PTB-084L06 23281 TGACAACACTTTGCCACCCAGCAAGAACTGGCACAATTGGTTTGGGTCTG 23330
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 1584 TGACAACACTTTGCCACCCAGCAAGAACTGGCACAATTGGTTTGGGTCTG 1633
PTB-084L06 23331 CATTGCCATAGTGCCCGAGTTAAAACTACAGGCCACTCCACCTTGCAAAC 23380
||||||||||||| ||||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 1634 CATTGCCATAGTGTCCGAGTTAAAACTACAGGCCACTCCACCTTGCAAAC 1683
PTB-084L06 23381 CTCACGTGGCCTCTGATTTCATTGTGGGTGCATCCACAGGTGGCGCTAGC 23430
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 1684 CTCACGTGGCCTCTGATTTCATTGTGGGTGCATCCACAGGTGGCGCTAGC 1733
PTB-084L06 23431 TCTTTTTTCAGCTGCTCCGAGGATTGGGACCCAAGTCATCATGAAAAAGG 23480
||||||||||||||||||||||||||||||| ||||||||||||||||||
hsa21-FEM1DP 1734 TCTTTTTTCAGCTGCTCCGAGGATTGGGACCTAAGTCATCATGAAAAAGG 1783
PTB-084L06 23481 CCCAGGTACAGTCTTAATGTGATAAATCCATTAGCTAAGATGTTGAGTGC 23530
|||||||||||||||||||||||||||||| ||||||||| |||||||||
hsa21-FEM1DP 1784 CCCAGGTACAGTCTTAATGTGATAAATCCACTAGCTAAGACGTTGAGTGC 1833
PTB-084L06 23531 CAAGACCAGCCTTCCAGCCAAGGTTTGGACAAAGTCTCAAGTTCCCATGA 23580
|||||| |||||||||||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 1834 CAAGACTAGCCTTCCAGCCAAGGTTTGGACAAAGTCTCAAGTTCCCATGA 1883
PTB-084L06 23581 CTCAGGGTAAGGTGCTGGGGCTGCCAGAGAACCTGCCCCAGCAAGATTTT 23630
||||||||||||||||||||||||||||| ||||||||||||||||||||
hsa21-FEM1DP 1884 CTCAGGGTAAGGTGCTGGGGCTGCCAGAGGACCTGCCCCAGCAAGATTTT 1933
PTB-084L06 23631 TCTCAAGAGTGAGACTCCATCAGCCTTGGCAGATGGGAGCAGGTTCTTGG 23680
||||||||||||||||||||||||| |||||| | ||||||||||||||
hsa21-FEM1DP 1934 TCTCAAGAGTGAGACTCCATCAGCCCGGGCAGACGTGAGCAGGTTCTTGG 1983
PTB-084L06 23681 CCGGTGTAGACAGCAGCAAACAGCAGAAGGGAAGCCATTCTCACTATATC 23730
| |||||||||||||||||||||||||||||||||||||||||||| |||
hsa21-FEM1DP 1984 CTGGTGTAGACAGCAGCAAACAGCAGAAGGGAAGCCATTCTCACTACATC 2033
PTB-084L06 23731 CTCCCTGCAGTAGCCACAGCCAGGCCCTTAGGAGGAGCAGCAACCGGGGG 23780
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 2034 CTCCCTGCAGTAGCCACAGCCAGGCCCTTAGGAGGAGCAGCAACCGGGGG 2083
PTB-084L06 23781 TGTCCAGAAACATCCCGCCCCTGGATGGAAACTAGGTCTCGTTTGGATTT 23830
||||||||||||||||| ||||||||||||||||||||||||||||||||
hsa21-FEM1DP 2084 TGTCCAGAAACATCCCGTCCCTGGATGGAAACTAGGTCTCGTTTGGATTT 2133
PTB-084L06 23831 TTTTTTCTTTTTTTTTGCCGTGTTAGGAAATTATTTATTAATTTACAAGA 23880
||||||| ||||||||||| ||||| ||||||||||||||||||||||||
hsa21-FEM1DP 2134 TTTTTTC-TTTTTTTTGCCATGTTATGAAATTATTTATTAATTTACAAGA 2182
PTB-084L06 23881 CAGGTTTTATCTCAGCCAAGGAGGGAAATGGCGTCCCTGTCCCTCCCAAA 23930
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-FEM1DP 2183 CAGGTTTTATCTCAGCCAAGGAGGGAAATGGCGTCCCTGTCCCTCCCAAA 2232
PTB-084L06 23931 GCACAGAGCAGAGAAATGAGGCTGTTTACATTGCGAGTCTCCGTGCTGGT 23980
||||||||||||||||||||||||||||||| ||||||||||||||||||
hsa21-FEM1DP 2233 GCACAGAGCAGAGAAATGAGGCTGTTTACATCGCGAGTCTCCGTGCTGGT 2282
PTB-084L06 23981 GTTTAAGTCATTAAAAAGATATTCAAAAAAAA 24012
||||||||||||||||||||||||||||||||
hsa21-FEM1DP 2283 GTTTAAGTCATTAAAAAGATATTCAAAAAAAA 2314
Alignment Score: 2182
