est2genome alignments of the C21orf34 cDNAs to the chimpanzee clone PTB-078F18
Note Best alignment is between forward est and forward genome, and splice sites imply forward gene
Exon 98 100.0 698 795 PTB-078F18 166 263 hsa21-C21orf34_AF486622
+Intron -20 0.0 796 50319 PTB-078F18
Exon 61 100.0 50320 50380 PTB-078F18 264 324 hsa21-C21orf34_AF486622
Span 139 100.0 698 50380 PTB-078F18 166 324 hsa21-C21orf34_AF486622
Segment 98 100.0 698 795 PTB-078F18 166 263 hsa21-C21orf34_AF486622
Segment 61 100.0 50320 50380 PTB-078F18 264 324 hsa21-C21orf34_AF486622
PTB-078F18 vs hsa21-C21orf34_AF486622:
PTB-078F18 698 GCTTTCTTTAGCTTGCCCATGGTGATGTGAAGATGAGAAGAAATAGCAAG 747
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AF486622 166 GCTTTCTTTAGCTTGCCCATGGTGATGTGAAGATGAGAAGAAATAGCAAG 215
PTB-078F18 748 GCCCAACCAGTTCTTCATCTGGAGACAGTTCAACGTTCTGCAAACCAGgt 795
||||||||||||||||||||||||||||||||||||||||||||||||>>
hsa21-C21orf34_AF486622 216 GCCCAACCAGTTCTTCATCTGGAGACAGTTCAACGTTCTGCAAACCAG.. 263
PTB-078F18 795 aaa.......ttcagATCTTCAGGAATTTTACTGGGATAATTATCCAAAT 50354
>>> 49524 >>>>>|||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AF486622 263 ...............ATCTTCAGGAATTTTACTGGGATAATTATCCAAAT 298
PTB-078F18 50355 AAATTGCAAGCATTCTATCCAAATGG 50380
||||||||||||||||||||||||||
hsa21-C21orf34_AF486622 299 AAATTGCAAGCATTCTATCCAAATGG 324
Alignment Score: 139
Note Best alignment is between forward est and forward genome, and splice sites imply forward gene
Exon 98 100.0 698 795 PTB-078F18 312 409 hsa21-C21orf34_AK095614
+Intron -20 0.0 796 50319 PTB-078F18
Exon 61 100.0 50320 50380 PTB-078F18 410 470 hsa21-C21orf34_AK095614
Span 139 100.0 698 50380 PTB-078F18 312 470 hsa21-C21orf34_AK095614
Segment 98 100.0 698 795 PTB-078F18 312 409 hsa21-C21orf34_AK095614
Segment 61 100.0 50320 50380 PTB-078F18 410 470 hsa21-C21orf34_AK095614
PTB-078F18 vs hsa21-C21orf34_AK095614:
PTB-078F18 698 GCTTTCTTTAGCTTGCCCATGGTGATGTGAAGATGAGAAGAAATAGCAAG 747
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AK095614 312 GCTTTCTTTAGCTTGCCCATGGTGATGTGAAGATGAGAAGAAATAGCAAG 361
PTB-078F18 748 GCCCAACCAGTTCTTCATCTGGAGACAGTTCAACGTTCTGCAAACCAGgt 795
||||||||||||||||||||||||||||||||||||||||||||||||>>
hsa21-C21orf34_AK095614 362 GCCCAACCAGTTCTTCATCTGGAGACAGTTCAACGTTCTGCAAACCAG.. 409
PTB-078F18 795 aaa.......ttcagATCTTCAGGAATTTTACTGGGATAATTATCCAAAT 50354
>>> 49524 >>>>>|||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AK095614 409 ...............ATCTTCAGGAATTTTACTGGGATAATTATCCAAAT 444
PTB-078F18 50355 AAATTGCAAGCATTCTATCCAAATGG 50380
||||||||||||||||||||||||||
hsa21-C21orf34_AK095614 445 AAATTGCAAGCATTCTATCCAAATGG 470
Alignment Score: 139
Note Best alignment is between forward est and forward genome, and splice sites imply forward gene
Exon 98 100.0 698 795 PTB-078F18 166 263 hsa21-C21orf34_AF486622
+Intron -20 0.0 796 50319 PTB-078F18
Exon 61 100.0 50320 50380 PTB-078F18 264 324 hsa21-C21orf34_AF486622
Span 139 100.0 698 50380 PTB-078F18 166 324 hsa21-C21orf34_AF486622
Segment 98 100.0 698 795 PTB-078F18 166 263 hsa21-C21orf34_AF486622
Segment 61 100.0 50320 50380 PTB-078F18 264 324 hsa21-C21orf34_AF486622
PTB-078F18 vs hsa21-C21orf34_AF486622:
PTB-078F18 698 GCTTTCTTTAGCTTGCCCATGGTGATGTGAAGATGAGAAGAAATAGCAAG 747
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AF486622 166 GCTTTCTTTAGCTTGCCCATGGTGATGTGAAGATGAGAAGAAATAGCAAG 215
PTB-078F18 748 GCCCAACCAGTTCTTCATCTGGAGACAGTTCAACGTTCTGCAAACCAGgt 795
||||||||||||||||||||||||||||||||||||||||||||||||>>
hsa21-C21orf34_AF486622 216 GCCCAACCAGTTCTTCATCTGGAGACAGTTCAACGTTCTGCAAACCAG.. 263
PTB-078F18 795 aaa.......ttcagATCTTCAGGAATTTTACTGGGATAATTATCCAAAT 50354
>>> 49524 >>>>>|||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AF486622 263 ...............ATCTTCAGGAATTTTACTGGGATAATTATCCAAAT 298
PTB-078F18 50355 AAATTGCAAGCATTCTATCCAAATGG 50380
||||||||||||||||||||||||||
hsa21-C21orf34_AF486622 299 AAATTGCAAGCATTCTATCCAAATGG 324
Alignment Score: 139
Note Best alignment is between forward est and forward genome, and splice sites imply forward gene
Exon 98 100.0 698 795 PTB-078F18 312 409 hsa21-C21orf34_AK095614
+Intron -20 0.0 796 50319 PTB-078F18
Exon 61 100.0 50320 50380 PTB-078F18 410 470 hsa21-C21orf34_AK095614
Span 139 100.0 698 50380 PTB-078F18 312 470 hsa21-C21orf34_AK095614
Segment 98 100.0 698 795 PTB-078F18 312 409 hsa21-C21orf34_AK095614
Segment 61 100.0 50320 50380 PTB-078F18 410 470 hsa21-C21orf34_AK095614
PTB-078F18 vs hsa21-C21orf34_AK095614:
PTB-078F18 698 GCTTTCTTTAGCTTGCCCATGGTGATGTGAAGATGAGAAGAAATAGCAAG 747
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AK095614 312 GCTTTCTTTAGCTTGCCCATGGTGATGTGAAGATGAGAAGAAATAGCAAG 361
PTB-078F18 748 GCCCAACCAGTTCTTCATCTGGAGACAGTTCAACGTTCTGCAAACCAGgt 795
||||||||||||||||||||||||||||||||||||||||||||||||>>
hsa21-C21orf34_AK095614 362 GCCCAACCAGTTCTTCATCTGGAGACAGTTCAACGTTCTGCAAACCAG.. 409
PTB-078F18 795 aaa.......ttcagATCTTCAGGAATTTTACTGGGATAATTATCCAAAT 50354
>>> 49524 >>>>>|||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AK095614 409 ...............ATCTTCAGGAATTTTACTGGGATAATTATCCAAAT 444
PTB-078F18 50355 AAATTGCAAGCATTCTATCCAAATGG 50380
||||||||||||||||||||||||||
hsa21-C21orf34_AK095614 445 AAATTGCAAGCATTCTATCCAAATGG 470
Alignment Score: 139
