est2genome alignments of the C21orf34 cDNAs to the chimpanzee clone PTB-018G23
Note Best alignment is between forward est and forward genome, and splice sites imply forward gene
Exon 166 100.0 19447 19612 PTB-018G23 1 166 hsa21-C21orf34_AF486622
+Intron -20 0.0 19613 130748 PTB-018G23
Exon 97 100.0 130749 130845 PTB-018G23 167 263 hsa21-C21orf34_AF486622
Span 243 100.0 19447 130845 PTB-018G23 1 263 hsa21-C21orf34_AF486622
Segment 166 100.0 19447 19612 PTB-018G23 1 166 hsa21-C21orf34_AF486622
Segment 97 100.0 130749 130845 PTB-018G23 167 263 hsa21-C21orf34_AF486622
PTB-018G23 vs hsa21-C21orf34_AF486622:
PTB-018G23 19447 TGGAGACACAGCTGGGCTGAACAAGATTTGCTTCAAACGACAACAAGAGA 19496
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AF486622 1 TGGAGACACAGCTGGGCTGAACAAGATTTGCTTCAAACGACAACAAGAGA 50
PTB-018G23 19497 GACAGAAAGTATCTGGTTCAACCGCTGCCCGAGCAGGCAGGCACCAGAAG 19546
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AF486622 51 GACAGAAAGTATCTGGTTCAACCGCTGCCCGAGCAGGCAGGCACCAGAAG 100
PTB-018G23 19547 AGCTAGCAGCCAATCCGGCCATGCTCGAAGCCAGCTCTGCAGCTCAGCCA 19596
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AF486622 101 AGCTAGCAGCCAATCCGGCCATGCTCGAAGCCAGCTCTGCAGCTCAGCCA 150
PTB-018G23 19597 ATCAGTGACATCATTGgtgag........tccagCTTTCTTTAGCTTGCC 130764
||||||||||||||||>>>>> 111136 >>>>>||||||||||||||||
hsa21-C21orf34_AF486622 151 ATCAGTGACATCATTG..................CTTTCTTTAGCTTGCC 182
PTB-018G23 130765 CATGGTGATGTGAAGATGAGAAGAAATAGCAAGGCCCAACCAGTTCTTCA 130814
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AF486622 183 CATGGTGATGTGAAGATGAGAAGAAATAGCAAGGCCCAACCAGTTCTTCA 232
PTB-018G23 130815 TCTGGAGACAGTTCAACGTTCTGCAAACCAG 130845
|||||||||||||||||||||||||||||||
hsa21-C21orf34_AF486622 233 TCTGGAGACAGTTCAACGTTCTGCAAACCAG 263
Alignment Score: 243
Note Best alignment is between forward est and forward genome, and splice sites imply forward gene
Exon 27 100.0 18736 18762 PTB-018G23 1 27 hsa21-C21orf34_AK095614
+Intron -20 0.0 18763 19327 PTB-018G23
Exon 281 99.3 19328 19612 PTB-018G23 28 312 hsa21-C21orf34_AK095614
+Intron -20 0.0 19613 130748 PTB-018G23
Exon 97 100.0 130749 130845 PTB-018G23 313 409 hsa21-C21orf34_AK095614
Span 365 99.5 18736 130845 PTB-018G23 1 409 hsa21-C21orf34_AK095614
Segment 27 100.0 18736 18762 PTB-018G23 1 27 hsa21-C21orf34_AK095614
Segment 281 99.3 19328 19612 PTB-018G23 28 312 hsa21-C21orf34_AK095614
Segment 97 100.0 130749 130845 PTB-018G23 313 409 hsa21-C21orf34_AK095614
PTB-018G23 vs hsa21-C21orf34_AK095614:
PTB-018G23 18736 ATAAAGGACTTGTCTAGGGGAGAGCCTgtagg.....tatagATGGATCT 19335
|||||||||||||||||||||||||||>>>>> 565 >>>>>||||||||
hsa21-C21orf34_AK095614 1 ATAAAGGACTTGTCTAGGGGAGAGCCT...............ATGGATCT 35
PTB-018G23 19336 GAGAACGCTGTCTGGGCTTGGTGCCAAGGGCTGGTATTTCACAGCAGCGA 19385
|||||||||||||||||||||| ||||| |||||||||||||||||||||
hsa21-C21orf34_AK095614 36 GAGAACGCTGTCTGGGCTTGGTACCAAGAGCTGGTATTTCACAGCAGCGA 85
PTB-018G23 19386 CCGCCTCACAGACGAGCTGTGGGAAGCAGGAGGGAGACTCTCTCTTAGGG 19435
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AK095614 86 CCGCCTCACAGACGAGCTGTGGGAAGCAGGAGGGAGACTCTCTCTTAGGG 135
PTB-018G23 19436 TGCCACTACTATGGAGACACAGCTGGGCTGAACAAGATTTGCTTCAAACG 19485
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AK095614 136 TGCCACTACTATGGAGACACAGCTGGGCTGAACAAGATTTGCTTCAAACG 185
PTB-018G23 19486 ACAACAAGAGAGACAGAAAGTATCTGGTTCAACCGCTGCCCGAGCAGGCA 19535
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AK095614 186 ACAACAAGAGAGACAGAAAGTATCTGGTTCAACCGCTGCCCGAGCAGGCA 235
PTB-018G23 19536 GGCACCAGAAGAGCTAGCAGCCAATCCGGCCATGCTCGAAGCCAGCTCTG 19585
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AK095614 236 GGCACCAGAAGAGCTAGCAGCCAATCCGGCCATGCTCGAAGCCAGCTCTG 285
PTB-018G23 19586 CAGCTCAGCCAATCAGTGACATCATTGgtgag........tccagCTTTC 130753
|||||||||||||||||||||||||||>>>>> 111136 >>>>>|||||
hsa21-C21orf34_AK095614 286 CAGCTCAGCCAATCAGTGACATCATTG..................CTTTC 317
PTB-018G23 130754 TTTAGCTTGCCCATGGTGATGTGAAGATGAGAAGAAATAGCAAGGCCCAA 130803
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AK095614 318 TTTAGCTTGCCCATGGTGATGTGAAGATGAGAAGAAATAGCAAGGCCCAA 367
PTB-018G23 130804 CCAGTTCTTCATCTGGAGACAGTTCAACGTTCTGCAAACCAG 130845
||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AK095614 368 CCAGTTCTTCATCTGGAGACAGTTCAACGTTCTGCAAACCAG 409
Alignment Score: 365
Note Best alignment is between forward est and forward genome, and splice sites imply forward gene
Exon 166 100.0 19447 19612 PTB-018G23 1 166 hsa21-C21orf34_AF486622
+Intron -20 0.0 19613 130748 PTB-018G23
Exon 97 100.0 130749 130845 PTB-018G23 167 263 hsa21-C21orf34_AF486622
Span 243 100.0 19447 130845 PTB-018G23 1 263 hsa21-C21orf34_AF486622
Segment 166 100.0 19447 19612 PTB-018G23 1 166 hsa21-C21orf34_AF486622
Segment 97 100.0 130749 130845 PTB-018G23 167 263 hsa21-C21orf34_AF486622
PTB-018G23 vs hsa21-C21orf34_AF486622:
PTB-018G23 19447 TGGAGACACAGCTGGGCTGAACAAGATTTGCTTCAAACGACAACAAGAGA 19496
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AF486622 1 TGGAGACACAGCTGGGCTGAACAAGATTTGCTTCAAACGACAACAAGAGA 50
PTB-018G23 19497 GACAGAAAGTATCTGGTTCAACCGCTGCCCGAGCAGGCAGGCACCAGAAG 19546
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AF486622 51 GACAGAAAGTATCTGGTTCAACCGCTGCCCGAGCAGGCAGGCACCAGAAG 100
PTB-018G23 19547 AGCTAGCAGCCAATCCGGCCATGCTCGAAGCCAGCTCTGCAGCTCAGCCA 19596
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AF486622 101 AGCTAGCAGCCAATCCGGCCATGCTCGAAGCCAGCTCTGCAGCTCAGCCA 150
PTB-018G23 19597 ATCAGTGACATCATTGgtgag........tccagCTTTCTTTAGCTTGCC 130764
||||||||||||||||>>>>> 111136 >>>>>||||||||||||||||
hsa21-C21orf34_AF486622 151 ATCAGTGACATCATTG..................CTTTCTTTAGCTTGCC 182
PTB-018G23 130765 CATGGTGATGTGAAGATGAGAAGAAATAGCAAGGCCCAACCAGTTCTTCA 130814
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AF486622 183 CATGGTGATGTGAAGATGAGAAGAAATAGCAAGGCCCAACCAGTTCTTCA 232
PTB-018G23 130815 TCTGGAGACAGTTCAACGTTCTGCAAACCAG 130845
|||||||||||||||||||||||||||||||
hsa21-C21orf34_AF486622 233 TCTGGAGACAGTTCAACGTTCTGCAAACCAG 263
Alignment Score: 243
Note Best alignment is between forward est and forward genome, and splice sites imply forward gene
Exon 27 100.0 18736 18762 PTB-018G23 1 27 hsa21-C21orf34_AK095614
+Intron -20 0.0 18763 19327 PTB-018G23
Exon 281 99.3 19328 19612 PTB-018G23 28 312 hsa21-C21orf34_AK095614
+Intron -20 0.0 19613 130748 PTB-018G23
Exon 97 100.0 130749 130845 PTB-018G23 313 409 hsa21-C21orf34_AK095614
Span 365 99.5 18736 130845 PTB-018G23 1 409 hsa21-C21orf34_AK095614
Segment 27 100.0 18736 18762 PTB-018G23 1 27 hsa21-C21orf34_AK095614
Segment 281 99.3 19328 19612 PTB-018G23 28 312 hsa21-C21orf34_AK095614
Segment 97 100.0 130749 130845 PTB-018G23 313 409 hsa21-C21orf34_AK095614
PTB-018G23 vs hsa21-C21orf34_AK095614:
PTB-018G23 18736 ATAAAGGACTTGTCTAGGGGAGAGCCTgtagg.....tatagATGGATCT 19335
|||||||||||||||||||||||||||>>>>> 565 >>>>>||||||||
hsa21-C21orf34_AK095614 1 ATAAAGGACTTGTCTAGGGGAGAGCCT...............ATGGATCT 35
PTB-018G23 19336 GAGAACGCTGTCTGGGCTTGGTGCCAAGGGCTGGTATTTCACAGCAGCGA 19385
|||||||||||||||||||||| ||||| |||||||||||||||||||||
hsa21-C21orf34_AK095614 36 GAGAACGCTGTCTGGGCTTGGTACCAAGAGCTGGTATTTCACAGCAGCGA 85
PTB-018G23 19386 CCGCCTCACAGACGAGCTGTGGGAAGCAGGAGGGAGACTCTCTCTTAGGG 19435
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AK095614 86 CCGCCTCACAGACGAGCTGTGGGAAGCAGGAGGGAGACTCTCTCTTAGGG 135
PTB-018G23 19436 TGCCACTACTATGGAGACACAGCTGGGCTGAACAAGATTTGCTTCAAACG 19485
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AK095614 136 TGCCACTACTATGGAGACACAGCTGGGCTGAACAAGATTTGCTTCAAACG 185
PTB-018G23 19486 ACAACAAGAGAGACAGAAAGTATCTGGTTCAACCGCTGCCCGAGCAGGCA 19535
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AK095614 186 ACAACAAGAGAGACAGAAAGTATCTGGTTCAACCGCTGCCCGAGCAGGCA 235
PTB-018G23 19536 GGCACCAGAAGAGCTAGCAGCCAATCCGGCCATGCTCGAAGCCAGCTCTG 19585
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AK095614 236 GGCACCAGAAGAGCTAGCAGCCAATCCGGCCATGCTCGAAGCCAGCTCTG 285
PTB-018G23 19586 CAGCTCAGCCAATCAGTGACATCATTGgtgag........tccagCTTTC 130753
|||||||||||||||||||||||||||>>>>> 111136 >>>>>|||||
hsa21-C21orf34_AK095614 286 CAGCTCAGCCAATCAGTGACATCATTG..................CTTTC 317
PTB-018G23 130754 TTTAGCTTGCCCATGGTGATGTGAAGATGAGAAGAAATAGCAAGGCCCAA 130803
||||||||||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AK095614 318 TTTAGCTTGCCCATGGTGATGTGAAGATGAGAAGAAATAGCAAGGCCCAA 367
PTB-018G23 130804 CCAGTTCTTCATCTGGAGACAGTTCAACGTTCTGCAAACCAG 130845
||||||||||||||||||||||||||||||||||||||||||
hsa21-C21orf34_AK095614 368 CCAGTTCTTCATCTGGAGACAGTTCAACGTTCTGCAAACCAG 409
Alignment Score: 365
