Supplementary information

From the following article:

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I & II Team*Y. Okazaki, M. Furuno, T. Kasukawa, J. Adachi, H. Bono, S. Kondo, I. Nikaido, N. Osato, R. Saito, H. Suzuki, I. Yamanaka, H. Kiyosawa, K. Yagi, Y. Tomaru, Y. Hasegawa, A. Nogami, C. Schönbach, T. Gojobori, R. Baldarelli, D. P. Hill, C. Bult, D. A. Hume, J. Quackenbush, L. M. Schriml, A. Kanapin, H. Matsuda, S. Batalov, K. W. Beisel, J. A. Blake, D. Bradt, V. Brusic, C. Chothia, L. E. Corbani, S. Cousins, E. Dalla, T. A. Dragani, C. F. Fletcher, A. Forrest, K. S. Frazer, T. Gaasterland, M. Gariboldi, C. Gissi, A. Godzik, J. Gough, S. Grimmond, S. Gustincich, N. Hirokawa, I. J. Jackson, E. D. Jarvis, A. Kanai, H. Kawaji, Y. Kawasawa, R. M. Kedzierski, B. L. King, A. Konagaya, I. V. Kurochkin, Y. Lee, B. Lenhard, P. A. Lyons, D. R. Maglott, L. Maltais, L. Marchionni, L. McKenzie, H. Miki, T. Nagashima, K. Numata, T. Okido, W. J. Pavan, G. Pertea, G. Pesole, N. Petrovsky, R. Pillai, J. U. Pontius, D. Qi, S. Ramachandran, T. Ravasi, J. C. Reed, D. J. Reed, J. Reid, B. Z. Ring, M. Ringwald, A. Sandelin, C. Schneider, C. A. M. Semple, M. Setou, K. Shimada, R. Sultana, Y. Takenaka, M. S. Taylor, R. D. Teasdale, M. Tomita, R. Verardo, L. Wagner, C. Wahlestedt, Y. Wang, Y. Watanabe, C. Wells, L. G. Wilming, A. Wynshaw-Boris, M. Yanagisawa, I. Yang, L. Yang, Z. Yuan, M. Zavolan, Y. Zhu & A. Zimmer for FANTOM Consortium:, P. Carninci, N. Hayatsu, T. Hirozane-Kishikawa, H. Konno, M. Nakamura, N. Sakazume, K. Sato, T. Shiraki & K. Waki for RIKEN Genome Exploration Research Group Phase I Team:, J. Kawai, K. Aizawa, T. Arakawa, S. Fukuda, A. Hara, W. Hashizume, K. Imotani, Y. Ishii, M. Itoh, I. Kagawa, A. Miyazaki, K. Sakai, D. Sasaki, K. Shibata, A. Shinagawa, A. Yasunishi & M. Yoshino for RIKEN Genome Exploration Research Group Phase II Team:, R. Waterston, E. S. Lander, J. Rogers & E. Birney for Mouse Genome Sequencing Consortium: & Y. Hayashizaki for Scientific management:

Nature 420, 563-573(5 December 2002)

doi:10.1038/nature01266

BACK TO ARTICLE

Section 1: Library information for all RIKEN 3' ESTs

Section 2: Full length sequencing of FANTOM2 clones

Section 3: Sequence Length distribution of FANTOM2 clones

Section 4: Distribution of Phred/Phrap scores in the FANTOM2 sequences

Section 5: Evaluation of completeness of FANTOM2 clone set

Section 6: Annotation pipeline and gene name nomenclature

Section 7: FANTOM2 Viewer

Section 8: Chromosomal distribution of the loci on mouse genome

Section 9: The flow chart to create RTPS

Section 10: CDS status for FANTOM2 representative clones

Section 11: Exon variation in transcripts of alternative splice clusters

Section 12: UTR motifs in FANTOM2 clones

Section 13: Repeat sequences in FANTOM2

Section 14: Comparison of sequence information for protein-coding and non-coding transcripts in the RTPS

Section 15: Superfamilies in RPS

Section 16: Superfamilies in VPS

Section 17: GO assignment for FANTOM2 clones

Section 18: Representative of known gene families

Section 19: Brief diagram of clustering method (ClusTrans)

Section 20: Database that were used for the annotation pipeline and curation

Section 21: Supplementary methods

Supplementary Information

Supplementary Information

BACK TO ARTICLE

DOWNLOAD BROWSER PLUGINS AND OTHER APPLICATIONS

Flash movies

Audio files

Chemical structures

Mathematica

Microarray

Compressed Stuff files

Compressed Zip files

Systems Biology Markup Language files (SBML)

Chemical Markup language files (CML)

BACK TO ARTICLE