Supplementary information
From the following article:
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I & II Team*Y. Okazaki, M. Furuno, T. Kasukawa, J. Adachi, H. Bono, S. Kondo, I. Nikaido, N. Osato, R. Saito, H. Suzuki, I. Yamanaka, H. Kiyosawa, K. Yagi, Y. Tomaru, Y. Hasegawa, A. Nogami, C. Schönbach, T. Gojobori, R. Baldarelli, D. P. Hill, C. Bult, D. A. Hume, J. Quackenbush, L. M. Schriml, A. Kanapin, H. Matsuda, S. Batalov, K. W. Beisel, J. A. Blake, D. Bradt, V. Brusic, C. Chothia, L. E. Corbani, S. Cousins, E. Dalla, T. A. Dragani, C. F. Fletcher, A. Forrest, K. S. Frazer, T. Gaasterland, M. Gariboldi, C. Gissi, A. Godzik, J. Gough, S. Grimmond, S. Gustincich, N. Hirokawa, I. J. Jackson, E. D. Jarvis, A. Kanai, H. Kawaji, Y. Kawasawa, R. M. Kedzierski, B. L. King, A. Konagaya, I. V. Kurochkin, Y. Lee, B. Lenhard, P. A. Lyons, D. R. Maglott, L. Maltais, L. Marchionni, L. McKenzie, H. Miki, T. Nagashima, K. Numata, T. Okido, W. J. Pavan, G. Pertea, G. Pesole, N. Petrovsky, R. Pillai, J. U. Pontius, D. Qi, S. Ramachandran, T. Ravasi, J. C. Reed, D. J. Reed, J. Reid, B. Z. Ring, M. Ringwald, A. Sandelin, C. Schneider, C. A. M. Semple, M. Setou, K. Shimada, R. Sultana, Y. Takenaka, M. S. Taylor, R. D. Teasdale, M. Tomita, R. Verardo, L. Wagner, C. Wahlestedt, Y. Wang, Y. Watanabe, C. Wells, L. G. Wilming, A. Wynshaw-Boris, M. Yanagisawa, I. Yang, L. Yang, Z. Yuan, M. Zavolan, Y. Zhu & A. Zimmer for FANTOM Consortium:, P. Carninci, N. Hayatsu, T. Hirozane-Kishikawa, H. Konno, M. Nakamura, N. Sakazume, K. Sato, T. Shiraki & K. Waki for RIKEN Genome Exploration Research Group Phase I Team:, J. Kawai, K. Aizawa, T. Arakawa, S. Fukuda, A. Hara, W. Hashizume, K. Imotani, Y. Ishii, M. Itoh, I. Kagawa, A. Miyazaki, K. Sakai, D. Sasaki, K. Shibata, A. Shinagawa, A. Yasunishi & M. Yoshino for RIKEN Genome Exploration Research Group Phase II Team:, R. Waterston, E. S. Lander, J. Rogers & E. Birney for Mouse Genome Sequencing Consortium: & Y. Hayashizaki for Scientific management:
Nature 420, 563-573(5 December 2002)
doi:10.1038/nature01266
Section 1: Library information for all RIKEN 3' ESTs
Section 2: Full length sequencing of FANTOM2 clones
Section 3: Sequence Length distribution of FANTOM2 clones
Section 4: Distribution of Phred/Phrap scores in the FANTOM2 sequences
Section 5: Evaluation of completeness of FANTOM2 clone set
Section 6: Annotation pipeline and gene name nomenclature
Section 7: FANTOM2 Viewer
Section 8: Chromosomal distribution of the loci on mouse genome
Section 9: The flow chart to create RTPS
Section 10: CDS status for FANTOM2 representative clones
Section 11: Exon variation in transcripts of alternative splice clusters
Section 12: UTR motifs in FANTOM2 clones
Section 13: Repeat sequences in FANTOM2
Section 14: Comparison of sequence information for protein-coding and non-coding transcripts in the RTPS
Section 15: Superfamilies in RPS
Section 16: Superfamilies in VPS
Section 17: GO assignment for FANTOM2 clones
Section 18: Representative of known gene families
Section 19: Brief diagram of clustering method (ClusTrans)
Section 20: Database that were used for the annotation pipeline and curation
Section 21: Supplementary methods
Supplementary Information
Supplementary Information
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