Supplementary information
FROM:
Prevalence of transcription promoters within archaeal operons and coding sequences
Tie Koide, David J Reiss, J Christopher Bare, Wyming Lee Pang, Marc T Facciotti, Amy K Schmid, Min Pan, Bruz Marzolf, Phu T Van, Fang-Yin Lo, Abhishek Pratap, Eric W Deutsch, Amelia Peterson, Dan Martin & Nitin S Baliga
doi:10.1038/msb.2009.42
BACK TO ARTICLEGeneral supplementary information
Supplementary Table 1
(A) Significant Transcription factor binding sites (TFBS, LFDR < 0.1) and (B) Multi transcription factor binding loci
Supplementary Table 2
Transcription start sites, termination sites and untranslated 5' and 3' regions for annotated genes and operons that were expressed in H. salinarum NRC-1 during growth and/or reference conditions.
Supplementary Table 3
Overlapping transcripts in H. salinarum NRC-1. Overlaps greater than 20 nt were considered as significant, given the error of transcript boundary detection using tiling arrays.
Supplementary Table 4
Revision of gene start codons based on detected TSS, Peptide Atlas information and H. salinarum R-1 annotation.
Supplementary Table 5
Newly transcribed elements in H. salinarum NRC-1 genome. Genome location, estimated length of the transcript and transcript levels (log ratio) during growth.
Supplementary Table 6
Conditional operons in H. salinarum NRC-1. Minimum correlation, tiling score values and combined score are reported. Manually verified conditional operons are also indicated.
Supplementary Table 7
Transcription factor binding sites (TFBS) internal to genes that are associated with a transcript boundary.
Supplementary Materials File 1
This file contains Supplementary figures S1-5, Supplementary table legends SI-VII
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