Supplementary information
FROM:
An integrated network approach identifies the isobutanol response network of Escherichia coli
Mark P Brynildsen & James C Liao
doi:10.1038/msb.2009.34
BACK TO ARTICLEGeneral supplementary information
Supplementary Table 1
Expression ratios for genes with significantly perturbed expression in the presence of isobutanol over all conditions and knockouts tested
Supplementary Table 2
Gene Ontology term enrichment of genes perturbed by isobutanol
Supplementary Table 3
Transcription network connectivity used to perform NCA
Supplementary Table 4
List of transcription factors (TF) analyzed by NCA
Supplementary Table 5
Expression ratios for ArcA regulon members
Supplementary Table 6
Protein BLAST results for B. subtillis PhoPR components
Supplementary Table 7
Expression ratios for PhoB regulon members and Fur regulon members
Supplementary Table 8
Gene Ontology term enrichment of genes with significant expression differences between ethanol and isobutanol, and n-butanol, and isobutanol stress
Supplementary Table 9
Expression ratios for IHF regulon members
Supplementary Table 10
Growth data for ÄarcA, Äfur, and ÄphoB in the presence of isobutanol
Supplementary Table 11
Quantitative real time PCR primers
Supplementary Table 12
Genes with significant expression differences between ethanol, n-butanol, and isobutanol stress
Supplementary Information
This file contains supplementary figures S1 and S2
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