Supplementary information
FROM:
Genome-wide allele- and strand-specific expression profiling
Julien Gagneur, Himanshu Sinha, Fabiana Perocchi, Richard Bourgon, Wolfgang Huber & Lars M Steinmetz
doi:10.1038/msb.2009.31
BACK TO ARTICLEGeneral supplementary information
Supplementary information
Supplementary information, Supplementary table VI, Supplementary figures S1-6
Supplementary Table I
Transcript expression levels, confidence intervals and differential expression FDR
Supplementary Table II
List of sense-antisense pairs and their expression levels
Supplementary Table III
Transcription factor target sets enrichment for differentially expressed genes between S and Y
Supplementary Table IV
32 PHO pathway genes (Ogawa et al, 2000; Wykoff et al, 2007) covered by our dataset (in alignment of Y and S genome and with at least 20 probes)
Supplementary Table V
Growth phenotypes in Arsenate containing media for 184 genotyped Y/S segregants
Supplementary Table VII
Allelic expression ratios from sequence traces
Supplementary Table VIII
Asymptotic standard deviation parameters per hybridization
allelicTxn R package
include source code and documentation
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