FIGURE 1 

FROM:

A uniform proteomics MS/MS analysis platform utilizing open XML file formats

Andrew Keller, Jimmy Eng, Ning Zhang, Xiao-jun Li & Ruedi Aebersold

doi:10.1038/msb4100024

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Trans-Protoemic Pipeline using open XML file formats at three steps: (1) raw spectral data generated by different mass spectrometers; (2) peptide assignments using different search engines; and (3) protein identifications using different methods of inference. Asterisk indicates that PeptideProphet must be specialized for each search engine.

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