Subject archive

Proteins

2009

Linear combinations of docking affinities explain quantitative differences in RTK signaling

Andrew Gordus, Jordan A Krall, Elsa M Beyer, Alexis Kaushansky, Alejandro Wolf-Yadlin, Mark Sevecka, Bryan H Chang, John Rush & Gavin MacBeath

doi:10.1038/msb.2008.72
Published online: 20 January 2009

Dynamic map of protein interactions in the Escherichia coli chemotaxis pathway

David Kentner & Victor Sourjik

doi:10.1038/msb.2008.77
Published online: 20 January 2009

Efficient protein depletion by genetically controlled deprotection of a dormant N-degron

Christof Taxis, Gunter Stier, Roberta Spadaccini & Michael Knop

doi:10.1038/msb.2009.25
Published online: 28 April 2009

An atlas of chaperone–protein interactions in Saccharomyces cerevisiae: implications to protein folding pathways in the cell

Yunchen Gong, Yoshito Kakihara, Nevan Krogan, Jack Greenblatt, Andrew Emili, Zhaolei Zhang & Walid A Houry

doi:10.1038/msb.2009.26
Published online: 16 June 2009

A comprehensive framework of E2–RING E3 interactions of the human ubiquitin–proteasome system

Sjoerd J L van Wijk, Sjoerd J de Vries, Patrick Kemmeren, Anding Huang, Rolf Boelens, Alexandre M J J Bonvin & H Th Marc Timmers

doi:10.1038/msb.2009.55
Published online: 18 August 2009

The switching dynamics of the bacterial flagellar motor

Siebe B van Albada, Sorin Ta brevenase-Nicola & Pieter Rein ten Wolde

doi:10.1038/msb.2009.74
Published online: 13 October 2009

Complex topology rather than complex membership is a determinant of protein dosage sensitivity

Richard Oberdorf & Tanja Kortemme

doi:10.1038/msb.2009.9
Published online: 17 March 2009

2008

The role of disorder in interaction networks: a structural analysis

Philip M Kim, Andrea Sboner, Yu Xia & Mark Gerstein

doi:10.1038/msb.2008.16
Published online: 25 March 2008

Constraints imposed by non-functional protein–protein interactions on gene expression and proteome size

Jingshan Zhang, Sergei Maslov & Eugene I Shakhnovich

doi:10.1038/msb.2008.48
Published online: 05 August 2008

Hepatitis C virus infection protein network

B de Chassey, V Navratil, L Tafforeau, M S Hiet, A Aublin-Gex, S Agaugué, G Meiffren, F Pradezynski, B F Faria, T Chantier, M Le Breton, J Pellet, N Davoust, P E Mangeot, A Chaboud, F Penin, Y Jacob, P O Vidalain, M Vidal, P André, C Rabourdin-Combe & V Lotteau

doi:10.1038/msb.2008.66
Published online: 04 November 2008

2007

Network-based prediction of protein function

Roded Sharan, Igor Ulitsky & Ron Shamir

doi:10.1038/msb4100129
Published online: 13 March 2007

2006

Synthetic protein–protein interaction domains created by shuffling Cys2His2 zinc-fingers

Astrid V Giesecke, Rui Fang & J Keith Joung

doi:10.1038/msb4100053
Published online: 21 March 2006

Residues crucial for maintaining short paths in network communication mediate signaling in proteins

Antonio del Sol, Hirotomo Fujihashi, Dolors Amoros & Ruth Nussinov

doi:10.1038/msb4100063
Published online: 02 May 2006

Markov propagation of allosteric effects in biomolecular systems: application to GroEL–GroES

Chakra Chennubhotla & Ivet Bahar

doi:10.1038/msb4100075
Published online: 04 July 2006

2005

Phosphotyrosine interactome of the ErbB-receptor kinase family

Waltraud X Schulze, Lei Deng & Matthias Mann

doi:10.1038/msb4100012
Published online: 25 May 2005

Circadian clocks go in vitro: purely post-translational oscillators in cyanobacteria

Felix Naef

doi:10.1038/msb4100027
Published online: 13 September 2005

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