Subject archive

Molecular Biology of Disease

2008

A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas

Kartik M Mani, Celine Lefebvre, Kai Wang, Wei Keat Lim, Katia Basso, Riccardo Dalla-Favera & Andrea Califano

doi:10.1038/msb.2008.2
Published online: 12 February 2008

Network-based global inference of human disease genes

Xuebing Wu, Rui Jiang, Michael Q Zhang & Shao Li

doi:10.1038/msb.2008.27
Published online: 06 May 2008

The liver pharmacological and xenobiotic gene response repertoire

Georges Natsoulis, Cecelia I Pearson, Jeremy Gollub, Barrett P Eynon, Joe Ferng, Ramesh Nair, Radha Idury, May D Lee, Mark R Fielden, Richard J Brennan, Alan H Roter & Kurt Jarnagin

doi:10.1038/msb.2008.9
Published online: 25 March 2008

1H NMR metabonomics approach to the disease continuum of diabetic complications and premature death

Ville-Petteri Mäkinen, Pasi Soininen, Carol Forsblom, Maija Parkkonen, Petri Ingman, Kimmo Kaski, Per-Henrik Groop & Mika Ala-Korpela for the FinnDiane Study Group

doi:10.1038/msb4100205
Published online: 12 February 2008

2007

Computational analysis of the synergy among multiple interacting genes

Dimitris Anastassiou

doi:10.1038/msb4100124
Published online: 13 February 2007

A network biology approach to prostate cancer

Ayla Ergün, Carolyn A Lawrence, Michael A Kohanski, Timothy A Brennan & James J Collins

doi:10.1038/msb4100125
Published online: 13 February 2007

Hubs in biological interaction networks exhibit low changes in expression in experimental asthma

Xin Lu, Vipul V Jain, Patricia W Finn & David L Perkins

doi:10.1038/msb4100138
Published online: 17 April 2007

A top-down systems biology view of microbiome-mammalian metabolic interactions in a mouse model

François-Pierre J Martin, Marc-Emmanuel Dumas, Yulan Wang, Cristina Legido-Quigley, Ivan K S Yap, Huiru Tang, Séverine Zirah, Gerard M Murphy, Olivier Cloarec, John C Lindon, Norbert Sprenger, Laurent B Fay, Sunil Kochhar, Peter van Bladeren, Elaine Holmes & Jeremy K Nicholson

doi:10.1038/msb4100153
Published online: 22 May 2007

Human disease classification in the postgenomic era: A complex systems approach to human pathobiology

Joseph Loscalzo, Isaac Kohane & Albert-Laszlo Barabasi

doi:10.1038/msb4100163
Published online: 10 July 2007

An integrated approach to prognosis using protein microarrays and nonparametric methods

Tanya Knickerbocker, Jiunn R Chen, Ravi Thadhani & Gavin MacBeath

doi:10.1038/msb4100167
Published online: 26 June 2007

Network-based classification of breast cancer metastasis

Han-Yu Chuang, Eunjung Lee, Yu-Tsueng Liu, Doheon Lee & Trey Ideker

doi:10.1038/msb4100180
Published online: 16 October 2007

A modular network model of aging

Huiling Xue, Bo Xian, Dong Dong, Kai Xia, Shanshan Zhu, Zhongnan Zhang, Lei Hou, Qingpeng Zhang, Yi Zhang & Jing-Dong J Han

doi:10.1038/msb4100189
Published online: 04 December 2007

Evolvable signaling networks of receptor tyrosine kinases: relevance of robustness to malignancy and to cancer therapy

Ido Amit, Ron Wides & Yosef Yarden

doi:10.1038/msb4100195
Published online: 04 December 2007

A map of human cancer signaling

Qinghua Cui, Yun Ma, Maria Jaramillo, Hamza Bari, Arif Awan, Song Yang, Simo Zhang, Lixue Liu, Meng Lu, Maureen O'Connor-McCourt, Enrico O Purisima & Edwin Wang

doi:10.1038/msb4100200
Published online: 18 December 2007

2006

Dynamic analysis of optimality in myocardial energy metabolism under normal and ischemic conditions

Ruo-Yu Luo, Sha Liao, Guan-Yang Tao, Yuan-Yuan Li, Shaoqun Zeng, Yi-Xue Li & Qingming Luo

doi:10.1038/msb4100071
Published online: 06 June 2006

Systems biology of SNPs

Neema Jamshidi & Bernhard Ø Palsson

doi:10.1038/msb4100077
Published online: 04 July 2006

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