Predicting synthetic rescues in metabolic networks
Adilson E Motter, Natali Gulbahce, Eivind Almaas & Albert-László Barabási
doi:10.1038/msb.2008.1
Published online:
12 February 2008
Synopsis | Full Text | PDF (366K) | Supplementary information
Subject archive
Cellular Metabolism
2008
A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1
Véronique de Berardinis, David Vallenet, Vanina Castelli, Marielle Besnard, Agnès Pinet, Corinne Cruaud, Sumitta Samair, Christophe Lechaplais, Gabor Gyapay, Céline Richez, Maxime Durot, Annett Kreimeyer, François Le Fèvre, Vincent Schächter, Valérie Pezo, Volker Döring, Claude Scarpelli, Claudine Médigue, Georges N Cohen, Philippe Marlière, Marcel Salanoubat & Jean Weissenbach
doi:10.1038/msb.2008.10
Published online:
04 March 2008
Synopsis | Full Text | PDF (579K) | Supplementary information
Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger
Mikael Rørdam Andersen, Michael Lynge Nielsen & Jens Nielsen
doi:10.1038/msb.2008.12
Published online:
25 March 2008
Synopsis | Full Text | PDF (494K) | Supplementary information
Mathematical modeling of pathogenicity of Cryptococcus neoformans
Jacqueline Garcia, John Shea, Fernando Alvarez-Vasquez, Asfia Qureshi, Chiara Luberto, Eberhard O Voit & Maurizio Del Poeta
doi:10.1038/msb.2008.17
Published online:
15 April 2008
Synopsis | Full Text | PDF (384K) | Supplementary information
Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat
Victor Kunin, Jeroen Raes, J Kirk Harris, John R Spear, Jeffrey J Walker, Natalia Ivanova, Christian von Mering, Brad M Bebout, Norman R Pace, Peer Bork & Philip Hugenholtz
doi:10.1038/msb.2008.35
Published online:
03 June 2008
Modeling the electron transport chain of purple non-sulfur bacteria
Steffen Klamt, Hartmut Grammel, Ronny Straube, Robin Ghosh & Ernst Dieter Gilles
doi:10.1038/msb4100191
Published online:
15 January 2008
Synopsis | Full Text | PDF (351K) | Supplementary information
2007
Gyrase inhibitors induce an oxidative damage cellular death pathway in Escherichia coli
Daniel J Dwyer, Michael A Kohanski, Boris Hayete & James J Collins
doi:10.1038/msb4100135
Published online:
13 March 2007
Synopsis | Full Text | PDF (429K) | Supplementary information
Flexibility in energy metabolism supports hypoxia tolerance in Drosophila flight muscle: metabolomic and computational systems analysis
Jacob D Feala, Laurence Coquin, Andrew D McCulloch & Giovanni Paternostro
doi:10.1038/msb4100139
Published online:
17 April 2007
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
Adam M Feist, Christopher S Henry, Jennifer L Reed, Markus Krummenacker, Andrew R Joyce, Peter D Karp, Linda J Broadbelt, Vassily Hatzimanikatis & Bernhard Ø Palsson
doi:10.1038/msb4100155
Published online:
26 June 2007
Synopsis | Full Text | PDF (953K) | Supplementary information
The Edinburgh human metabolic network reconstruction and its functional analysis
Hongwu Ma, Anatoly Sorokin, Alexander Mazein, Alex Selkov, Evgeni Selkov, Oleg Demin & Igor Goryanin
doi:10.1038/msb4100177
Published online:
18 September 2007
2006
Modeling methanogenesis with a genome-scale metabolic reconstruction of Methanosarcina barkeri
Adam M Feist, Johannes C M Scholten, Bernhard Ø Palsson, Fred J Brockman & Trey Ideker
doi:10.1038/msb4100046
Published online:
31 January 2006
Synopsis | Full Text | PDF (571K) | Supplementary information
Expression and functional profiling reveal distinct gene classes involved in fatty acid metabolism
Jennifer J Smith, Yaroslav Sydorskyy, Marcello Marelli, Daehee Hwang, Hamid Bolouri, Richard A Rachubinski & John D Aitchison
doi:10.1038/msb4100051
Published online:
21 February 2006
Dynamic analysis of optimality in myocardial energy metabolism under normal and ischemic conditions
Ruo-Yu Luo, Sha Liao, Guan-Yang Tao, Yuan-Yuan Li, Shaoqun Zeng, Yi-Xue Li & Qingming Luo
doi:10.1038/msb4100071
Published online:
06 June 2006
Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data
Anne Kümmel, Sven Panke & Matthias Heinemann
doi:10.1038/msb4100074
Published online:
20 June 2006
Synopsis | Full Text | PDF (182K) | Supplementary information
