Original Article

Leukemia (2007) 21, 1481–1487; doi:10.1038/sj.leu.2404716; published online 3 May 2007

Characterization of a reference material for BCR-ABL (M-BCR) mRNA quantitation by real-time amplification assays: towards new standards for gene expression measurements

J Saldanha1,25, M Silvy2, N Beaufils2, R Arlinghaus3, G Barbany4, S Branford5, J-M Cayuela6, G Cazzaniga7, M Gonzalez8, D Grimwade9, V Kairisto10, K Miyamura11, M Lawler12, T Lion13, E Macintyre14, F-X Mahon15, M C Muller16, M Ostergaard17, H Pfeifer18, G Saglio19, C Sawyers20, O Spinelli21, V H J van der Velden22, J Q Wang23, K Zoi24, V Patel1, P Phillips1, P Matejtschuk1 and J Gabert2

  1. 1National Institute of Biological Standards and Controls, South Mimms, UK
  2. 2Biochemistry and Molecular Biology Laboratory ERT MEIDIA, APHM-IFR Jean Roche, Université de la Méditerranée, Marseille, France
  3. 3Molecular Pathology, MD Anderson, Houston, TX, USA
  4. 4Molecular Medicine and Surgery, Karolinska Hospital, Stockholm, Sweden
  5. 5Molecular Pathology, Institute of Medicine & Veterinary Science, Adelaide, Australia
  6. 6Hematology and INSERM U728, St Louis Hospital, Paris, France
  7. 7Pediatric Clinic, University of Milan-Bicocca, Ospedale San Gerardo, Monza, Italy
  8. 8Hematology, Hospital Clinico Universitario, Salamanca, Spain
  9. 9Department of Medical & Molecular Genetics, King's College London, London, UK
  10. 10Laboratory Department 931, TYKSLAB, Turku University Hospital, Turku, Finland
  11. 11Rheumatology and Hematology, Tohoku University School of Medicine1, Sendai, Japan
  12. 12Hematology, St James's Hospital, Dublin, Ireland
  13. 13Molecular Biology, Children's Cancer Research Institute, Vienna, Austria
  14. 14Hematology, Necker Hospital, Paris, France
  15. 15Laboratoire de greffe de Moelle – UMR 5540, University Hospital, Bordeaux, France
  16. 16III Medizinische Klinik, Medizinische Fakultaet Mannheim der Universitaet Heidelberg, Mannheim, Germany
  17. 17Department of Hematology, Aarhus University Hospital, Aarhus, Denmark
  18. 18Hematology, University Hospital, Frankfurt, Germany
  19. 19Clinical and Biological Science, University Hospital, Turin, Italy
  20. 20Hematology Oncology, UCLA, Los Angeles, CA, USA
  21. 21Hematology, Ospedali Riuniti, Bergamo, Italy
  22. 22Immunology, Erasmus, MC University Medical Center Rotterdam, Rotterdam, The Netherlands
  23. 23Specialty Laboratories, Santa Monica, CA, USA
  24. 24Foundation for Biomedical Research, Academy of Athens, Athens, Greece

Correspondence: Professor J Gabert, Biochemistry and Molecular Biology Laboratory, IFR Jean Roche, Faculte de Medecine NORD, Bd Pierre Dramard, 13916 Marseille Cedex 20, France. E-mail: jean.gabert@univmed.fr

25Current address: Roche Molecular Systems Inc., Pleasanton, CA 94588, USA

Received 27 January 2006; Revised 14 March 2007; Accepted 22 March 2007; Published online 3 May 2007.

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Abstract

Monitoring of BCR-ABL transcripts has become established practice in the management of chronic myeloid leukemia. However, nucleic acid amplification techniques are prone to variations which limit the reliability of real-time quantitative PCR (RQ-PCR) for clinical decision making, highlighting the need for standardization of assays and reporting of minimal residual disease (MRD) data. We evaluated a lyophilized preparation of a leukemic cell line (K562) as a potential quality control reagent. This was found to be relatively stable, yielding comparable respective levels of ABL, GUS and BCR-ABL transcripts as determined by RQ-PCR before and after accelerated degradation experiments as well as following 5 years storage at -20°C. Vials of freeze-dried cells were sent at ambient temperature to 22 laboratories on four continents, with RQ-PCR analyses detecting BCR-ABL transcripts at levels comparable to those observed in primary patient samples. Our results suggest that freeze-dried cells can be used as quality control reagents with a range of analytical instrumentations and could enable the development of urgently needed international standards simulating clinically relevant levels of MRD.

Keywords:

freeze-dried cells, RQ-PCR, gene expression, reference material, standardization

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