Original Article
Leukemia (2007) 21, 1481–1487; doi:10.1038/sj.leu.2404716; published online 3 May 2007
Characterization of a reference material for BCR-ABL (M-BCR) mRNA quantitation by real-time amplification assays: towards new standards for gene expression measurements
J Saldanha1,25, M Silvy2, N Beaufils2, R Arlinghaus3, G Barbany4, S Branford5, J-M Cayuela6, G Cazzaniga7, M Gonzalez8, D Grimwade9, V Kairisto10, K Miyamura11, M Lawler12, T Lion13, E Macintyre14, F-X Mahon15, M C Muller16, M Ostergaard17, H Pfeifer18, G Saglio19, C Sawyers20, O Spinelli21, V H J van der Velden22, J Q Wang23, K Zoi24, V Patel1, P Phillips1, P Matejtschuk1 and J Gabert2
- 1National Institute of Biological Standards and Controls, South Mimms, UK
- 2Biochemistry and Molecular Biology Laboratory ERT MEIDIA, APHM-IFR Jean Roche, Université de la Méditerranée, Marseille, France
- 3Molecular Pathology, MD Anderson, Houston, TX, USA
- 4Molecular Medicine and Surgery, Karolinska Hospital, Stockholm, Sweden
- 5Molecular Pathology, Institute of Medicine & Veterinary Science, Adelaide, Australia
- 6Hematology and INSERM U728, St Louis Hospital, Paris, France
- 7Pediatric Clinic, University of Milan-Bicocca, Ospedale San Gerardo, Monza, Italy
- 8Hematology, Hospital Clinico Universitario, Salamanca, Spain
- 9Department of Medical & Molecular Genetics, King's College London, London, UK
- 10Laboratory Department 931, TYKSLAB, Turku University Hospital, Turku, Finland
- 11Rheumatology and Hematology, Tohoku University School of Medicine1, Sendai, Japan
- 12Hematology, St James's Hospital, Dublin, Ireland
- 13Molecular Biology, Children's Cancer Research Institute, Vienna, Austria
- 14Hematology, Necker Hospital, Paris, France
- 15Laboratoire de greffe de Moelle – UMR 5540, University Hospital, Bordeaux, France
- 16III Medizinische Klinik, Medizinische Fakultaet Mannheim der Universitaet Heidelberg, Mannheim, Germany
- 17Department of Hematology, Aarhus University Hospital, Aarhus, Denmark
- 18Hematology, University Hospital, Frankfurt, Germany
- 19Clinical and Biological Science, University Hospital, Turin, Italy
- 20Hematology Oncology, UCLA, Los Angeles, CA, USA
- 21Hematology, Ospedali Riuniti, Bergamo, Italy
- 22Immunology, Erasmus, MC University Medical Center Rotterdam, Rotterdam, The Netherlands
- 23Specialty Laboratories, Santa Monica, CA, USA
- 24Foundation for Biomedical Research, Academy of Athens, Athens, Greece
Correspondence: Professor J Gabert, Biochemistry and Molecular Biology Laboratory, IFR Jean Roche, Faculte de Medecine NORD, Bd Pierre Dramard, 13916 Marseille Cedex 20, France. E-mail: jean.gabert@univmed.fr
25Current address: Roche Molecular Systems Inc., Pleasanton, CA 94588, USA
Received 27 January 2006; Revised 14 March 2007; Accepted 22 March 2007; Published online 3 May 2007.
Abstract
Monitoring of BCR-ABL transcripts has become established practice in the management of chronic myeloid leukemia. However, nucleic acid amplification techniques are prone to variations which limit the reliability of real-time quantitative PCR (RQ-PCR) for clinical decision making, highlighting the need for standardization of assays and reporting of minimal residual disease (MRD) data. We evaluated a lyophilized preparation of a leukemic cell line (K562) as a potential quality control reagent. This was found to be relatively stable, yielding comparable respective levels of ABL, GUS and BCR-ABL transcripts as determined by RQ-PCR before and after accelerated degradation experiments as well as following 5 years storage at -20°C. Vials of freeze-dried cells were sent at ambient temperature to 22 laboratories on four continents, with RQ-PCR analyses detecting BCR-ABL transcripts at levels comparable to those observed in primary patient samples. Our results suggest that freeze-dried cells can be used as quality control reagents with a range of analytical instrumentations and could enable the development of urgently needed international standards simulating clinically relevant levels of MRD.
Keywords:
freeze-dried cells, RQ-PCR, gene expression, reference material, standardization
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