Technical Report

Laboratory Investigation (2004) 84, 932–936, advance online publication, 22 March 2004; doi:10.1038/labinvest.3700092

Short consensus probes with 3'-minor groove binder of the immunoglobulin heavy-chain gene for real-time quantitative PCR in B-cell non-Hodgkin lymphomas

Michihiro Uchiyama1, Chihaya Maesawa1, Akiko Yashima-Abo1, Mitsu Tarusawa1, Mamoru Satoh2, Takashi Satoh1, Yoji Ishida3, Shigeki Ito3, Kazunori Murai3, Sanae Enomoto3, Taiju Utsugisawa3 and Tomoyuki Masuda1

  1. 1Department of Pathology, Iwate Medical University School of Medicine, Morioka, Japan
  2. 2Second Department of Internal Medicine, Iwate Medical University School of Medicine, Morioka, Japan
  3. 3Division of Hematology, Third Department of Internal Medicine, Iwate Medical University School of Medicine, Morioka, Japan

Correspondence: C Maesawa, MD, Department of Pathology, Iwate Medical University School of Medicine, Uchimaru 19-1, 020-8505 Morioka, Japan. E-mail: chihaya@iwate-med.ac.jp

Received 30 July 2003; Revised 27 January 2004; Accepted 10 February 2004; Published online 22 March 2004.

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Abstract

We used 3'-minor groove binder (MGB) technology to develop consensus fluorogenically labeled probes of the immunoglobulin heavy-chain (IgH) gene for detecting minimal residual disease (MRD) in B-cell non-Hodgkin lymphoma (B-NHL). Sequence data from 59 patients with B-NHLs revealed a narrow consensus region as a result of somatic hypermutations and variable VH usage, indicating that it would be difficult to design ordinary non-MGB probes. MGB probes, characterized by shorter length but higher melting temperature, are more suitable for this situation than ordinary non-MGB probes. In fact, the present data indicated that about 20% more cases were detectable with MGB probes (34/59, 57.6%) than with the non-MGB probes (23/59, 39.0%) designed by Donovan et al. MGB technology is useful for the design of consensus fluorogenically labeled probes of the IgH gene for detecting MRD.

Keywords:

minor groove binder, RQ-PCR, B-cell non-Hodgkin lymphoma, lgH, minimal residual disease

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