The ISME Journal http://www.nature.com/ismej/journal/vaop/ncurrent/rss.rdf Nature Publishing Group en Copyright © Nature Publishing Group The ISME Journal 1751-7362 Copyright © Nature Publishing Group permissions@nature.com The ISME Journal http://www.nature.com/aj/images/logos_b_o_w/ismej.gif http://www.nature.com/ismej/ Response of fermentation and sulfate reduction to experimental temperature changes in temperate and Arctic marine sediments http://dx.doi.org/10.1038/ISMEJ.2008.20 Response of fermentation and sulfate reduction to experimental temperature changes in temperate and Arctic marine sediments

The ISME Journal advance online publication, February 28, 2008. doi:10.1038/ISMEJ.2008.20

Authors: Niko Finke & Bo Barker Jørgensen

]]> Response of fermentation and sulfate reduction to experimental temperature changes in temperate and Arctic marine sediments Niko Finke Bo Barker Jørgensen doi:10.1038/ISMEJ.2008.20 The ISME Journal advance online publication, February 28, 2008 February 28, 2008 The ISME Journal February 28, 2008 aop current Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal http://dx.doi.org/10.1038/ismej.2008.38 Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal

The ISME Journal advance online publication, May 1, 2008. doi:10.1038/ismej.2008.38

Authors: Paul Wilmes, Anders F Andersson, Mark G Lefsrud, Margaret Wexler, Manesh Shah, Bing Zhang, Robert L Hettich, Philip L Bond, Nathan C VerBerkmoes & Jillian F Banfield

]]> Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal Paul Wilmes Anders F Andersson Mark G Lefsrud Margaret Wexler Manesh Shah Bing Zhang Robert L Hettich Philip L Bond Nathan C VerBerkmoes Jillian F Banfield doi:10.1038/ismej.2008.38 The ISME Journal advance online publication, May 1, 2008 May 1, 2008 The ISME Journal May 1, 2008 aop current Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions http://dx.doi.org/10.1038/ismej.2008.40 Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions

The ISME Journal advance online publication, May 8, 2008. doi:10.1038/ismej.2008.40

Authors: Ana-Belen Martin-Cuadrado, Francisco Rodriguez-Valera, David Moreira, José C Alba, Elena Ivars-Martínez, Matthew R Henn, Emmanuel Talla & Purificación López-García

]]> Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions Ana-Belen Martin-Cuadrado Francisco Rodriguez-Valera David Moreira José C Alba Elena Ivars-Martínez Matthew R Henn Emmanuel Talla Purificación López-García doi:10.1038/ismej.2008.40 The ISME Journal advance online publication, May 8, 2008 May 8, 2008 The ISME Journal May 8, 2008 aop current Selection of bacterial populations in the mycosphere of Laccaria proxima: is type III secretion involved? http://dx.doi.org/10.1038/ismej.2008.41 Selection of bacterial populations in the mycosphere of Laccaria proxima: is type III secretion involved?

The ISME Journal advance online publication, April 17, 2008. doi:10.1038/ismej.2008.41

Authors: Jan Aaldrik Warmink & Jan Dirk van Elsas

]]> Selection of bacterial populations in the mycosphere of Laccaria proxima: is type III secretion involved? Jan Aaldrik Warmink Jan Dirk van Elsas doi:10.1038/ismej.2008.41 The ISME Journal advance online publication, April 17, 2008 April 17, 2008 The ISME Journal April 17, 2008 aop current Temperature thresholds for bacterial symbiosis with a sponge http://dx.doi.org/10.1038/ismej.2008.42 Temperature thresholds for bacterial symbiosis with a sponge

The ISME Journal advance online publication, May 15, 2008. doi:10.1038/ismej.2008.42

Authors: Nicole S Webster, Rose E Cobb & Andrew P Negri

]]> Temperature thresholds for bacterial symbiosis with a sponge Nicole S Webster Rose E Cobb Andrew P Negri doi:10.1038/ismej.2008.42 The ISME Journal advance online publication, May 15, 2008 May 15, 2008 The ISME Journal May 15, 2008 aop current Function and evolution of the psbA gene family in marine Synechococcus: Synechococcus sp. WH7803 as a case study http://dx.doi.org/10.1038/ismej.2008.46 Function and evolution of the psbA gene family in marine Synechococcus: Synechococcus sp. WH7803 as a case study

The ISME Journal advance online publication, May 29, 2008. doi:10.1038/ismej.2008.46

Authors: Laurence Garczarek, Alexis Dufresne, Nicolas Blot, Amanda M Cockshutt, Anne Peyrat, Douglas A Campbell, Ludovic Joubin & Christophe Six

]]> Function and evolution of the psbA gene family in marine Synechococcus: Synechococcus sp. WH7803 as a case study Laurence Garczarek Alexis Dufresne Nicolas Blot Amanda M Cockshutt Anne Peyrat Douglas A Campbell Ludovic Joubin Christophe Six doi:10.1038/ismej.2008.46 The ISME Journal advance online publication, May 29, 2008 May 29, 2008 The ISME Journal May 29, 2008 aop current Pseudomonas aeruginosa uses type III secretion system to kill biofilm-associated amoebae http://dx.doi.org/10.1038/ismej.2008.47 Pseudomonas aeruginosa uses type III secretion system to kill biofilm-associated amoebae

The ISME Journal advance online publication, May 15, 2008. doi:10.1038/ismej.2008.47

Authors: Carsten Matz, Ana Maria Moreno, Morten Alhede, Mike Manefield, Alan R Hauser, Michael Givskov & Staffan Kjelleberg

]]> Pseudomonas aeruginosa uses type III secretion system to kill biofilm-associated amoebae Carsten Matz Ana Maria Moreno Morten Alhede Mike Manefield Alan R Hauser Michael Givskov Staffan Kjelleberg doi:10.1038/ismej.2008.47 The ISME Journal advance online publication, May 15, 2008 May 15, 2008 The ISME Journal May 15, 2008 aop current High aromatic ring-cleavage diversity in birch rhizosphere: PAH treatment-specific changes of I.E.3 group extradiol dioxygenases and 16S rRNA bacterial communities in soil http://dx.doi.org/10.1038/ismej.2008.50 High aromatic ring-cleavage diversity in birch rhizosphere: PAH treatment-specific changes of I.E.3 group extradiol dioxygenases and 16S rRNA bacterial communities in soil

The ISME Journal advance online publication, June 19, 2008. doi:10.1038/ismej.2008.50

Authors: Timo P Sipilä, Anna-Kaisa Keskinen, Marja-Leena Åkerman, Carola Fortelius, Kielo Haahtela & Kim Yrjälä

]]> High aromatic ring-cleavage diversity in birch rhizosphere: PAH treatment-specific changes of I.E.3 group extradiol dioxygenases and 16S rRNA bacterial communities in soil Timo P Sipilä Anna-Kaisa Keskinen Marja-Leena Åkerman Carola Fortelius Kielo Haahtela Kim Yrjälä doi:10.1038/ismej.2008.50 The ISME Journal advance online publication, June 19, 2008 June 19, 2008 The ISME Journal June 19, 2008 aop current Diversity and abundance of diazotrophic microorganisms in the South China Sea during intermonsoon http://dx.doi.org/10.1038/ismej.2008.51 Diversity and abundance of diazotrophic microorganisms in the South China Sea during intermonsoon

The ISME Journal advance online publication, June 5, 2008. doi:10.1038/ismej.2008.51

Authors: Pia H Moisander, Roxanne A Beinart, Maren Voss & Jonathan P Zehr

]]> Diversity and abundance of diazotrophic microorganisms in the South China Sea during intermonsoon Pia H Moisander Roxanne A Beinart Maren Voss Jonathan P Zehr doi:10.1038/ismej.2008.51 The ISME Journal advance online publication, June 5, 2008 June 5, 2008 The ISME Journal June 5, 2008 aop current Long-term experimental warming alters nitrogen-cycling communities but site factors remain the primary drivers of community structure in high arctic tundra soils http://dx.doi.org/10.1038/ismej.2008.52 Long-term experimental warming alters nitrogen-cycling communities but site factors remain the primary drivers of community structure in high arctic tundra soils

The ISME Journal advance online publication, June 5, 2008. doi:10.1038/ismej.2008.52

Authors: Jennifer K M Walker, Keith N Egger & Gregory H R Henry

]]> Long-term experimental warming alters nitrogen-cycling communities but site factors remain the primary drivers of community structure in high arctic tundra soils Jennifer K M Walker Keith N Egger Gregory H R Henry doi:10.1038/ismej.2008.52 The ISME Journal advance online publication, June 5, 2008 June 5, 2008 The ISME Journal June 5, 2008 aop current Spatial structure and nutrients promote invasion of IncP-1 plasmids in bacterial populations http://dx.doi.org/10.1038/ismej.2008.53 Spatial structure and nutrients promote invasion of IncP-1 plasmids in bacterial populations

The ISME Journal advance online publication, June 5, 2008. doi:10.1038/ismej.2008.53

Authors: Randal E Fox, Xue Zhong, Stephen M Krone & Eva M Top

]]> Spatial structure and nutrients promote invasion of IncP-1 plasmids in bacterial populations Randal E Fox Xue Zhong Stephen M Krone Eva M Top doi:10.1038/ismej.2008.53 The ISME Journal advance online publication, June 5, 2008 June 5, 2008 The ISME Journal June 5, 2008 aop current Indole cell signaling occurs primarily at low temperatures in Escherichia coli http://dx.doi.org/10.1038/ismej.2008.54 Indole cell signaling occurs primarily at low temperatures in Escherichia coli

The ISME Journal advance online publication, June 5, 2008. doi:10.1038/ismej.2008.54

Authors: Jintae Lee, Xue-Song Zhang, Manjunath Hegde, William E Bentley, Arul Jayaraman & Thomas K Wood

]]> Indole cell signaling occurs primarily at low temperatures in Escherichia coli Jintae Lee Xue-Song Zhang Manjunath Hegde William E Bentley Arul Jayaraman Thomas K Wood doi:10.1038/ismej.2008.54 The ISME Journal advance online publication, June 5, 2008 June 5, 2008 The ISME Journal June 5, 2008 aop current Distantly sampled soils carry few species in common http://dx.doi.org/10.1038/ismej.2008.55 Distantly sampled soils carry few species in common

The ISME Journal advance online publication, June 5, 2008. doi:10.1038/ismej.2008.55

Authors: Roberta R Fulthorpe, Luiz F W Roesch, Alberto Riva & Eric W Triplett

]]> Distantly sampled soils carry few species in common Roberta R Fulthorpe Luiz F W Roesch Alberto Riva Eric W Triplett doi:10.1038/ismej.2008.55 The ISME Journal advance online publication, June 5, 2008 June 5, 2008 The ISME Journal June 5, 2008 aop current Seasonal dynamics of the endosymbiotic, nitrogen-fixing cyanobacterium Richelia intracellularis in the eastern Mediterranean Sea http://dx.doi.org/10.1038/ismej.2008.56 Seasonal dynamics of the endosymbiotic, nitrogen-fixing cyanobacterium Richelia intracellularis in the eastern Mediterranean Sea

The ISME Journal advance online publication, June 26, 2008. doi:10.1038/ismej.2008.56

Authors: Edo Bar Zeev, Tali Yogev, Dikla Man-Aharonovich, Nurit Kress, Barak Herut, Oded Béjà & Ilana Berman-Frank

]]> Seasonal dynamics of the endosymbiotic, nitrogen-fixing cyanobacterium Richelia intracellularis in the eastern Mediterranean Sea Edo Bar Zeev Tali Yogev Dikla Man-Aharonovich Nurit Kress Barak Herut Oded Béjà Ilana Berman-Frank doi:10.1038/ismej.2008.56 The ISME Journal advance online publication, June 26, 2008 June 26, 2008 The ISME Journal June 26, 2008 aop current Dynamics and diversity of newly produced virioplankton in the North Sea http://dx.doi.org/10.1038/ismej.2008.57 Dynamics and diversity of newly produced virioplankton in the North Sea

The ISME Journal advance online publication, June 12, 2008. doi:10.1038/ismej.2008.57

Authors: Verónica Parada, Anne-Claire Baudoux, Eva Sintes, Markus G Weinbauer & Gerhard J Herndl

]]> Dynamics and diversity of newly produced virioplankton in the North Sea Verónica Parada Anne-Claire Baudoux Eva Sintes Markus G Weinbauer Gerhard J Herndl doi:10.1038/ismej.2008.57 The ISME Journal advance online publication, June 12, 2008 June 12, 2008 The ISME Journal June 12, 2008 aop current Microbial contributions to climate change through carbon cycle feedbacks http://dx.doi.org/10.1038/ismej.2008.58 Microbial contributions to climate change through carbon cycle feedbacks

The ISME Journal advance online publication, July 10, 2008. doi:10.1038/ismej.2008.58

Authors: Richard D Bardgett, Chris Freeman & Nicholas J Ostle

]]> Microbial contributions to climate change through carbon cycle feedbacks Richard D Bardgett Chris Freeman Nicholas J Ostle doi:10.1038/ismej.2008.58 The ISME Journal advance online publication, July 10, 2008 July 10, 2008 The ISME Journal July 10, 2008 aop current Isolation of Streptomyces sp. PCB7, the first microorganism demonstrating high-affinity uptake of tropospheric H2 http://dx.doi.org/10.1038/ismej.2008.59 Isolation of Streptomyces sp. PCB7, the first microorganism demonstrating high-affinity uptake of tropospheric H2

The ISME Journal advance online publication, June 12, 2008. doi:10.1038/ismej.2008.59

Authors: Philippe Constant, Laurier Poissant & Richard Villemur

]]> Isolation of Streptomyces sp. PCB7, the first microorganism demonstrating high-affinity uptake of tropospheric H2 Philippe Constant Laurier Poissant Richard Villemur doi:10.1038/ismej.2008.59 The ISME Journal advance online publication, June 12, 2008 June 12, 2008 The ISME Journal June 12, 2008 aop current Characterization of Fe(II) oxidizing bacterial activities and communities at two acidic Appalachian coalmine drainage-impacted sites http://dx.doi.org/10.1038/ismej.2008.60 Characterization of Fe(II) oxidizing bacterial activities and communities at two acidic Appalachian coalmine drainage-impacted sites

The ISME Journal advance online publication, June 12, 2008. doi:10.1038/ismej.2008.60

Authors: John M Senko, Pauline Wanjugi, Melanie Lucas, Mary Ann Bruns & William D Burgos

]]> Characterization of Fe(II) oxidizing bacterial activities and communities at two acidic Appalachian coalmine drainage-impacted sites John M Senko Pauline Wanjugi Melanie Lucas Mary Ann Bruns William D Burgos doi:10.1038/ismej.2008.60 The ISME Journal advance online publication, June 12, 2008 June 12, 2008 The ISME Journal June 12, 2008 aop current Microbes orchestrate life on Earth http://dx.doi.org/10.1038/ismej.2008.61 Microbes orchestrate life on Earth

The ISME Journal advance online publication, July 16, 2008. doi:10.1038/ismej.2008.61

Authors: George A Kowalchuk, Susan E Jones & Linda L Blackall

]]> Microbes orchestrate life on Earth George A Kowalchuk Susan E Jones Linda L Blackall doi:10.1038/ismej.2008.61 The ISME Journal advance online publication, July 16, 2008 July 16, 2008 The ISME Journal July 16, 2008 aop current Genomic patterns of recombination, clonal divergence and environment in marine microbial populations http://dx.doi.org/10.1038/ismej.2008.62 Genomic patterns of recombination, clonal divergence and environment in marine microbial populations

The ISME Journal advance online publication, June 26, 2008. doi:10.1038/ismej.2008.62

Authors: Konstantinos T Konstantinidis & Edward F DeLong

]]> Genomic patterns of recombination, clonal divergence and environment in marine microbial populations Konstantinos T Konstantinidis Edward F DeLong doi:10.1038/ismej.2008.62 The ISME Journal advance online publication, June 26, 2008 June 26, 2008 The ISME Journal June 26, 2008 aop current Light dependency of nitrogen fixation in a coastal cyanobacterial mat http://dx.doi.org/10.1038/ismej.2008.63 Light dependency of nitrogen fixation in a coastal cyanobacterial mat

The ISME Journal advance online publication, June 19, 2008. doi:10.1038/ismej.2008.63

Authors: Ina Severin & Lucas J Stal

]]> Light dependency of nitrogen fixation in a coastal cyanobacterial mat Ina Severin Lucas J Stal doi:10.1038/ismej.2008.63 The ISME Journal advance online publication, June 19, 2008 June 19, 2008 The ISME Journal June 19, 2008 aop current Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures http://dx.doi.org/10.1038/ismej.2008.64 Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures

The ISME Journal advance online publication, June 19, 2008. doi:10.1038/ismej.2008.64

Authors: Nico Jehmlich, Frank Schmidt, Martin von Bergen, Hans-Hermann Richnow & Carsten Vogt

]]> Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures Nico Jehmlich Frank Schmidt Martin von Bergen Hans-Hermann Richnow Carsten Vogt doi:10.1038/ismej.2008.64 The ISME Journal advance online publication, June 19, 2008 June 19, 2008 The ISME Journal June 19, 2008 aop current On the contributions of David Cleaveland White, MD, PhD to microbial ecology: celebrating the life of a pioneer http://dx.doi.org/10.1038/ismej.2008.65 On the contributions of David Cleaveland White, MD, PhD to microbial ecology: celebrating the life of a pioneer

The ISME Journal advance online publication, June 19, 2008. doi:10.1038/ismej.2008.65

Authors: Brandon EL Morris, Bryan R Crable & Joseph M Suflita

]]> On the contributions of David Cleaveland White, MD, PhD to microbial ecology: celebrating the life of a pioneer Brandon EL Morris Bryan R Crable Joseph M Suflita doi:10.1038/ismej.2008.65 The ISME Journal advance online publication, June 19, 2008 June 19, 2008 The ISME Journal June 19, 2008 aop current Seasonality of rDNA- and rRNA-derived archaeal communities and methanogenic potential in a boreal mire http://dx.doi.org/10.1038/ismej.2008.66 Seasonality of rDNA- and rRNA-derived archaeal communities and methanogenic potential in a boreal mire

The ISME Journal advance online publication, July 24, 2008. doi:10.1038/ismej.2008.66

Authors: Heli Juottonen, Eeva-Stiina Tuittila, Sari Juutinen, Hannu Fritze & Kim Yrjälä

]]> Seasonality of rDNA- and rRNA-derived archaeal communities and methanogenic potential in a boreal mire Heli Juottonen Eeva-Stiina Tuittila Sari Juutinen Hannu Fritze Kim Yrjälä doi:10.1038/ismej.2008.66 The ISME Journal advance online publication, July 24, 2008 July 24, 2008 The ISME Journal July 24, 2008 aop current Microbial ecology of the equine hindgut during oligofructose-induced laminitis http://dx.doi.org/10.1038/ismej.2008.67 Microbial ecology of the equine hindgut during oligofructose-induced laminitis

The ISME Journal advance online publication, June 26, 2008. doi:10.1038/ismej.2008.67

Authors: Gabriel J Milinovich, Paul C Burrell, Christopher C Pollitt, Athol V Klieve, Linda L Blackall, Diane Ouwerkerk, Erika Woodland & Darren J Trott

]]> Microbial ecology of the equine hindgut during oligofructose-induced laminitis Gabriel J Milinovich Paul C Burrell Christopher C Pollitt Athol V Klieve Linda L Blackall Diane Ouwerkerk Erika Woodland Darren J Trott doi:10.1038/ismej.2008.67 The ISME Journal advance online publication, June 26, 2008 June 26, 2008 The ISME Journal June 26, 2008 aop current Quorum sensing in Cyanobacteria: N-octanoyl-homoserine lactone release and response, by the epilithic colonial cyanobacterium Gloeothece PCC6909 http://dx.doi.org/10.1038/ismej.2008.68 Quorum sensing in Cyanobacteria: N-octanoyl-homoserine lactone release and response, by the epilithic colonial cyanobacterium Gloeothece PCC6909

The ISME Journal advance online publication, July 17, 2008. doi:10.1038/ismej.2008.68

Authors: Dilara I Sharif, John Gallon, Chris J Smith & Ed Dudley

]]> Quorum sensing in Cyanobacteria: N-octanoyl-homoserine lactone release and response, by the epilithic colonial cyanobacterium Gloeothece PCC6909 Dilara I Sharif John Gallon Chris J Smith Ed Dudley doi:10.1038/ismej.2008.68 The ISME Journal advance online publication, July 17, 2008 July 17, 2008 The ISME Journal July 17, 2008 aop current The rational exploration of microbial diversity http://dx.doi.org/10.1038/ismej.2008.69 The rational exploration of microbial diversity

The ISME Journal advance online publication, July 24, 2008. doi:10.1038/ismej.2008.69

Authors: Christopher Quince, Thomas P Curtis & William T Sloan

]]> The rational exploration of microbial diversity Christopher Quince Thomas P Curtis William T Sloan doi:10.1038/ismej.2008.69 The ISME Journal advance online publication, July 24, 2008 July 24, 2008 The ISME Journal July 24, 2008 aop current Quorum-sensing signals in the microbial community of the cabbage white butterfly larval midgut http://dx.doi.org/10.1038/ismej.2008.70 Quorum-sensing signals in the microbial community of the cabbage white butterfly larval midgut

The ISME Journal advance online publication, July 24, 2008. doi:10.1038/ismej.2008.70

Authors: Bradley R Borlee, Grant D Geske, Courtney J Robinson, Helen E Blackwell & Jo Handelsman

]]> Quorum-sensing signals in the microbial community of the cabbage white butterfly larval midgut Bradley R Borlee Grant D Geske Courtney J Robinson Helen E Blackwell Jo Handelsman doi:10.1038/ismej.2008.70 The ISME Journal advance online publication, July 24, 2008 July 24, 2008 The ISME Journal July 24, 2008 aop current Transcription of nitrification genes by the methane-oxidizing bacterium, Methylococcus capsulatus strain Bath http://dx.doi.org/10.1038/ismej.2008.71 Transcription of nitrification genes by the methane-oxidizing bacterium, Methylococcus capsulatus strain Bath

The ISME Journal advance online publication, July 24, 2008. doi:10.1038/ismej.2008.71

Authors: Amisha T Poret-Peterson, James E Graham, Jay Gulledge & Martin G Klotz

]]> Transcription of nitrification genes by the methane-oxidizing bacterium, Methylococcus capsulatus strain Bath Amisha T Poret-Peterson James E Graham Jay Gulledge Martin G Klotz doi:10.1038/ismej.2008.71 The ISME Journal advance online publication, July 24, 2008 July 24, 2008 The ISME Journal July 24, 2008 aop current