ADVANCE ONLINE PUBLICATION
The latest research papers, published online ahead of print. These online versions are definitive and may be cited using the digital object identifier (DOI).
About advance online publication
May 8 2008 |
May 1 2008 |
April 24 2008 |
April 17 2008 |
April 10 2008 |
April 3 2008 |
March 27 2008 |
March 20 2008 |
February 28 2008
May 15 2008
Original Articles
Pseudomonas aeruginosa uses type III secretion system to kill biofilm-associated amoebae
Carsten Matz, Ana Maria Moreno, Morten Alhede, Mike Manefield, Alan R Hauser, Michael Givskov and Staffan Kjelleberg
ISME J advance online publication, May 15, 2008; doi:10.1038/ismej.2008.47
Temperature thresholds for bacterial symbiosis with a sponge
Nicole S Webster, Rose E Cobb and Andrew P Negri
ISME J advance online publication, May 15, 2008; doi:10.1038/ismej.2008.42
May 8 2008
Mini-Review
The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity
Stephen J Bent and Larry J Forney
ISME J advance online publication, May 8, 2008; doi:10.1038/ismej.2008.44
Original Article
Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions
Ana-Belen Martin-Cuadrado, Francisco Rodriguez-Valera, David Moreira, José C Alba, Elena Ivars-Martínez, Matthew R Henn, Emmanuel Talla and Purificación López-García
ISME J advance online publication, May 8, 2008; doi:10.1038/ismej.2008.40
May 1 2008
Original Article
Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal
Paul Wilmes, Anders F Andersson, Mark G Lefsrud, Margaret Wexler, Manesh Shah, Bing Zhang, Robert L Hettich, Philip L Bond, Nathan C VerBerkmoes and Jillian F Banfield
ISME J advance online publication, May 1, 2008; doi:10.1038/ismej.2008.38
April 24 2008
Original Article
Numbers, biomass and cultivable diversity of microbial populations relate to depth and borehole-specific conditions in groundwater from depths of 4–450 m in Olkiluoto, Finland
Karsten Pedersen, Johanna Arlinger, Sara Eriksson, Anna Hallbeck, Lotta Hallbeck and Jessica Johansson
ISME J advance online publication, April 24, 2008; doi:10.1038/ismej.2008.43
April 17 2008
Original Articles
Selection of bacterial populations in the mycosphere of Laccaria proxima: is type III secretion involved?
Jan Aaldrik Warmink and Jan Dirk van Elsas
ISME J advance online publication, April 17, 2008; doi:10.1038/ismej.2008.41
Humoral immunity to commensal oral bacteria in human infants: evidence that Streptococcus mitis biovar 1 colonization induces strain-specific salivary immunoglobulin A antibodies
Katherine A Wirth, George H Bowden, Jennifer L Kirchherr, Dorothy A Richmond, Michael J Sheridan and Michael F Cole
ISME J advance online publication, April 17, 2008; doi:10.1038/ismej.2008.26
April 10 2008
Original Article
Molecular analysis of the gut microbiota of identical twins with Crohn's disease
Johan Dicksved, Jonas Halfvarson, Magnus Rosenquist, Gunnar Järnerot, Curt Tysk, Juha Apajalahti, Lars Engstrand and Janet K Jansson
ISME J advance online publication, April 10, 2008; doi:10.1038/ismej.2008.37
April 3 2008
Commentary
Global-scale processes with a nanoscale drive: the role of marine viruses
Corina P D Brussaard, Steven W Wilhelm, Frede Thingstad, Markus G Weinbauer, Gunnar Bratbak, Mikal Heldal, Susan A Kimmance, Mathias Middelboe, Keizo Nagasaki, John H Paul, Declan C Schroeder, Curtis A Suttle, Dolors Vaqué and K Eric Wommack
ISME J advance online publication, April 3, 2008; doi:10.1038/ismej.2008.31
Original Articles
Applying stable isotope probing of phospholipid fatty acids and rRNA in a Chinese rice field to study activity and composition of the methanotrophic bacterial communities in situ
Qiongfen Qiu, Matthias Noll, Wolf-Rainer Abraham, Yahai Lu and Ralf Conrad
ISME J advance online publication, April 3, 2008; doi:10.1038/ismej.2008.34
Characterizing mixed microbial population dynamics using time-series analysis
Pål Trosvik, Knut Rudi, Tormod Næs, Achim Kohler, Kung-Sik Chan, Kjetill S Jakobsen and Nils C Stenseth
ISME J advance online publication, April 3, 2008; doi:10.1038/ismej.2008.36
March 27 2008
Original Article
Widespread distribution of proteorhodopsins in freshwater and brackish ecosystems
Nof Atamna-Ismaeel, Gazalah Sabehi, Itai Sharon, Karl-Paul Witzel, Matthias Labrenz, Klaus Jürgens, Tamar Barkay, Maayke Stomp, Jef Huisman and Oded Beja
ISME J advance online publication, March 27, 2008; doi:10.1038/ismej.2008.27
March 20 2008
Original Articles
Direct analysis of tfdA gene expression by indigenous bacteria in phenoxy acid amended agricultural soil
Jacob Bælum, Mette H Nicolaisen, William E Holben, Bjarne W Strobel, Jan Sørensen and Carsten S Jacobsen
ISME J advance online publication, March 20, 2008; doi:10.1038/ismej.2008.21
Phylogenetic and functional gene analysis of the bacterial and archaeal communities associated with the surface microlayer of an estuary
Michael Cunliffe, Hendrik Schäfer, Emma Harrison, Simon Cleave, Robert Upstill-Goddard and J Colin Murrell
ISME J advance online publication, March 20, 2008; doi:10.1038/ismej.2008.28
Niche differentiation among sulfur-oxidizing bacterial populations in cave waters
Jennifer L Macalady, Sharmishtha Dattagupta, Irene Schaperdoth, Daniel S Jones, Greg K Druschel and Danielle Eastman
ISME J advance online publication, March 20, 2008; doi:10.1038/ismej.2008.25
The immediate environment during postnatal development has long-term impact on gut community structure in pigs
Claire L Thompson, Bing Wang and Andrew J Holmes
ISME J advance online publication, March 20, 2008; doi:10.1038/ismej.2008.29
February 28 2008
Original Articles
Response of fermentation and sulfate reduction to experimental temperature changes in temperate and Arctic marine sediments
Niko Finke and Bo Barker Jørgensen
ISME J advance online publication, February 28, 2008; doi:10.1038/ISMEJ.2008.20
Nitrogen fixation in an anticyclonic eddy in the oligotrophic North Pacific Ocean
Allison A Fong, David M Karl, Roger Lukas, Ricardo M Letelier, Jonathan P Zehr and Matthew J Church
ISME J advance online publication, February 28, 2008; doi:10.1038/ismej.2008.22
Evolution of host resistance in a toxin-producing bacterial–fungal alliance
Imke Schmitt, Laila P Partida-Martinez, Robert Winkler, Kerstin Voigt, Esra Einax, Franziska Dölz, Sabine Telle, Johannes Wöstemeyer and Christian Hertweck
ISME J advance online publication, February 28, 2008; doi:10.1038/ismej.2008.19
Microarray-based whole-genome hybridization as a tool for determining procaryotic species relatedness
Liyou Wu, Xueduan Liu, Matthew W Fields, Dorothea K Thompson, Christopher E Bagwell, James M Tiedje, Terry C Hazen and Jizhong Zhou
ISME J advance online publication, February 28, 2008; doi:10.1038/ismej.2008.23
Escherichia coli transcription factor YncC (McbR) regulates colanic acid and biofilm formation by repressing expression of periplasmic protein YbiM (McbA)
Xue-Song Zhang, Rodolfo García-Contreras and Thomas K Wood
ISME J advance online publication, February 28, 2008; doi:10.1038/ismej.2008.24
