TABLE OF CONTENTS

Volume 7, Issue 10 (October 2013)

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Mini Review

Insights from quantitative metaproteomics and protein-stable isotope probing into microbial ecology FREE

Martin von Bergen, Nico Jehmlich, Martin Taubert, Carsten Vogt, Felipe Bastida, Florian-Alexander Herbst, Frank Schmidt, Hans-Hermann Richnow and Jana Seifert

ISME J 7: 1877-1885; advance online publication, May 16, 2013; doi:10.1038/ismej.2013.78

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Original Articles

Microbial Population and Community Ecology

Lrs14 transcriptional regulators influence biofilm formation and cell motility of Crenarchaea FREE

Alvaro Orell, Eveline Peeters, Victoria Vassen, Silke Jachlewski, Sven Schalles, Bettina Siebers and Sonja-Verena Albers

ISME J 7: 1886-1898; advance online publication, May 9, 2013; doi:10.1038/ismej.2013.68

Subject Category: Microbial population and community ecology

Determining indicator taxa across spatial and seasonal gradients in the Columbia River coastal margin FREE

Caroline S Fortunato, Alexander Eiler, Lydie Herfort, Joseph A Needoba, Tawnya D Peterson and Byron C Crump

ISME J 7: 1899-1911; advance online publication, May 30, 2013; doi:10.1038/ismej.2013.79

Subject Category: Microbial population and community ecology

Diversity of protists and bacteria determines predation performance and stability FREE

Muhammad Saleem, Ingo Fetzer, Hauke Harms and Antonis Chatzinotas

ISME J 7: 1912-1921; advance online publication, June 13, 2013; doi:10.1038/ismej.2013.95

Subject Category: Microbial population and community ecology

Microbe-Microbe and Microbe-Host Interactions

The inconstant gut microbiota of Drosophila species revealed by 16S rRNA gene analysis FREE

Adam C-N Wong, John M Chaston and Angela E Douglas

ISME J 7: 1922-1932; advance online publication, May 30, 2013; doi:10.1038/ismej.2013.86

Subject Category: Microbe-microbe and microbe-host interactions

A metabolomic view of how the human gut microbiota impacts the host metabolome using humanized and gnotobiotic mice FREE

A Marcobal, P C Kashyap, T A Nelson, P A Aronov, M S Donia, A Spormann, M A Fischbach and J L Sonnenburg

ISME J 7: 1933-1943; advance online publication, June 6, 2013; doi:10.1038/ismej.2013.89

Subject Category: Microbe-microbe and microbe-host interactions

Integrated Genomics and Post-Genomics Approaches in Microbial Ecology

Metagenomic insights into strategies of carbon conservation and unusual sulfur biogeochemistry in a hypersaline Antarctic lake FREE

Sheree Yau, Federico M Lauro, Timothy J Williams, Matthew Z DeMaere, Mark V Brown, John Rich, John AE Gibson and Ricardo Cavicchioli

ISME J 7: 1944-1961; advance online publication, April 25, 2013; doi:10.1038/ismej.2013.69

Subject Category: Integrated genomics and post-genomics approaches in microbial ecology

Community transcriptomic assembly reveals microbes that contribute to deep-sea carbon and nitrogen cycling FREE

Brett J Baker, Cody S Sheik, Chris A Taylor, Sunit Jain, Ashwini Bhasi, James D Cavalcoli and Gregory J Dick

ISME J 7: 1962-1973; advance online publication, May 23, 2013; doi:10.1038/ismej.2013.85

Subject Category: Integrated genomics and post-genomics approaches in microbial ecology

The PathoChip, a functional gene array for assessing pathogenic properties of diverse microbial communities FREE

Yong-Jin Lee, Joy D van Nostrand, Qichao Tu, Zhenmei Lu, Lei Cheng, Tong Yuan, Ye Deng, Michelle Q Carter, Zhili He, Liyou Wu, Fang Yang, Jian Xu and Jizhong Zhou

ISME J 7: 1974-1984; advance online publication, June 13, 2013; doi:10.1038/ismej.2013.88

Subject Category: Integrated genomics and post-genomics approaches in microbial ecology

Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits FREE

David Goudenège, Yannick Labreuche, Evelyne Krin, Dominique Ansquer, Sophie Mangenot, Alexandra Calteau, Claudine Médigue, Didier Mazel, Martin F Polz and Frédérique Le Roux

ISME J 7: 1985-1996; advance online publication, June 6, 2013; doi:10.1038/ismej.2013.90

Subject Category: Integrated genomics and post-genomics approaches in microbial ecology

Geomicrobiology and Microbial Contributions to Geochemical Cycles

Specific carbonate–microbe interactions in the modern microbialites of Lake Alchichica (Mexico) FREE

Emmanuelle Gérard, Bénédicte Ménez, Estelle Couradeau, David Moreira, Karim Benzerara, Rosaluz Tavera and Purificación López-García

ISME J 7: 1997-2009; advance online publication, June 27, 2013; doi:10.1038/ismej.2013.81

Subject Category: Geomicrobiology and microbial contributions to geochemical cycles

Carbon availability triggers the decomposition of plant litter and assimilation of nitrogen by an ectomycorrhizal fungus Open

F Rineau, F Shah, M M Smits, P Persson, T Johansson, R Carleer, C Troein and A Tunlid

ISME J 7: 2010-2022; advance online publication, June 20, 2013; doi:10.1038/ismej.2013.91

Subject Category: Geomicrobiology and microbial contributions to geochemical cycles

Microbial Ecology and Functional Diversity of Natural Habitats

Ammonia oxidation kinetics and temperature sensitivity of a natural marine community dominated by Archaea FREE

Rachel E A Horak, Wei Qin, Andy J Schauer, E Virginia Armbrust, Anitra E Ingalls, James W Moffett, David A Stahl and Allan H Devol

ISME J 7: 2023-2033; advance online publication, May 9, 2013; doi:10.1038/ismej.2013.75

Subject Category: Microbial ecology and functional diversity of natural habitats

A design-constraint trade-off underpins the diversity in ecologically important traits in species Escherichia coli FREE

Katherine Phan and Thomas Ferenci

ISME J 7: 2034-2043; advance online publication, May 16, 2013; doi:10.1038/ismej.2013.82

Subject Category: Microbial ecology and functional diversity of natural habitats

Linking microbial community structure to β-glucosidic function in soil aggregates FREE

Vanessa L Bailey, Sarah J Fansler, James C Stegen and Lee Ann McCue

ISME J 7: 2044-2053; advance online publication, May 30, 2013; doi:10.1038/ismej.2013.87

Subject Category: Microbial ecology and functional diversity of natural habitats

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Short Communications

Microbial Population and Community Ecology

Can we detect oceanic biodiversity hotspots from space? FREE

Silvia De Monte, Alice Soccodato, Séverine Alvain and Francesco d'Ovidio

ISME J 7: 2054-2056; advance online publication, May 2, 2013; doi:10.1038/ismej.2013.72

Subject Category: Microbial population and community ecology

Chytrid epidemics may increase genetic diversity of a diatom spring-bloom FREE

Alena S Gsell, Lisette N de Senerpont Domis, Koen JF Verhoeven, Ellen van Donk and Bastiaan W Ibelings

ISME J 7: 2057-2059; advance online publication, May 9, 2013; doi:10.1038/ismej.2013.73

Subject Category: Microbial population and community ecology

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Erratum

Community transcriptomic assembly reveals microbes that contribute to deep-sea carbon and nitrogen cycling FREE

Brett J Baker, Cody S Sheik, Chris A Taylor, Sunit Jain, Ashwini Bhasi, James D Cavalcoli and Gregory J Dick

ISME J 7: 2060; doi:10.1038/ismej.2013.101