TABLE OF CONTENTS

Volume 3, Issue 7 (July 2009)

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Original Articles

Microbial Population and Community Ecology

Competition favours reduced cost of plasmids to host bacteria

Rembrandt J F Haft, John E Mittler and Beth Traxler

ISME J 3: 761-769; advance online publication, April 2, 2009; doi:10.1038/ismej.2009.22

Subject Category: Microbial population and community ecology

Functional GacS in Pseudomonas DSS73 prevents digestion by Caenorhabditis elegans and protects the nematode from killer flagellates

Lisa Bjørnlund, Regin Rønn, Maria Péchy-Tarr, Monika Maurhofer, Christoph Keel and Ole Nybroe

ISME J 3: 770-779; advance online publication, April 2, 2009; doi:10.1038/ismej.2009.28

Subject Category: Microbial population and community ecology

Time- and sediment depth-related variations in bacterial diversity and community structure in subtidal sands

Simone I Böer, Stefanie I C Hedtkamp, Justus E E van Beusekom, Jed A Fuhrman, Antje Boetius and Alban Ramette

ISME J 3: 780-791; advance online publication, April 2, 2009; doi:10.1038/ismej.2009.29

Subject Category: Microbial population and community ecology

Bias in assessments of marine microbial biodiversity in fosmid libraries as evaluated by pyrosequencing

Ben Temperton, Dawn Field, Anna Oliver, Bela Tiwari, Martin Mühling, Ian Joint and Jack A Gilbert

ISME J 3: 792-796; advance online publication, April 2, 2009; doi:10.1038/ismej.2009.32

Subject Category: Microbial population and community ecology

Characterization of the complex bacterial communities colonizing biliary stents reveals a host-dependent diversity

Britta K Scheithauer, Melissa L Wos-Oxley, Björn Ferslev, Helmut Jablonowski and Dietmar H Pieper

ISME J 3: 797-807; advance online publication, April 9, 2009; doi:10.1038/ismej.2009.36

Subject Category: Microbial population and community ecology

Microbe-Microbe and Microbe-Host Interactions

Extracellular polysaccharide-protein complexes of a harmful alga mediate the allelopathic control it exerts within the phytoplankton community

Yasuhiro Yamasaki, Tomoyuki Shikata, Atsushi Nukata, Satoko Ichiki, Sou Nagasoe, Tadashi Matsubara, Yohei Shimasaki, Miki Nakao, Kenichi Yamaguchi, Yuji Oshima, Tatsuya Oda, Makoto Ito, Ian R Jenkinson, Makio Asakawa and Tsuneo Honjo

ISME J 3: 808-817; advance online publication, March 26, 2009; doi:10.1038/ismej.2009.24

Subject Category: Microbe-microbe and microbe-host interactions

Skin microbes on frogs prevent morbidity and mortality caused by a lethal skin fungus

Reid N Harris, Robert M Brucker, Jenifer B Walke, Matthew H Becker, Christian R Schwantes, Devon C Flaherty, Brianna A Lam, Douglas C Woodhams, Cheryl J Briggs, Vance T Vredenburg and Kevin P C Minbiole

ISME J 3: 818-824; advance online publication, March 26, 2009; doi:10.1038/ismej.2009.27

Subject Category: Microbe-microbe and microbe-host interactions

Acyl-homoserine lactone-mediated cross talk among epiphytic bacteria modulates behavior of Pseudomonas syringae on leaves

Glenn F J Dulla and Steven E Lindow

ISME J 3: 825-834; advance online publication, April 2, 2009; doi:10.1038/ismej.2009.30

Subject Category: Microbe-microbe and microbe-host interactions

Integrated Genomics and Post-Genomics Approaches in Microbial Ecology

Microarray analysis of phosphate regulation in the marine cyanobacterium Synechococcus sp. WH8102

Sasha G Tetu, Bianca Brahamsha, Daniel A Johnson, Vera Tai, Katherine Phillippy, Brian Palenik and Ian T Paulsen

ISME J 3: 835-849; advance online publication, April 2, 2009; doi:10.1038/ismej.2009.31

Subject Category: Integrated genomics and post-genomics approaches in microbial ecology

Microbial Ecology and Functional Diversity of Natural Habitats

Microbial diversity in alpine tundra soils correlates with snow cover dynamics

Lucie Zinger, Bahar Shahnavaz, Florence Baptist, Roberto A Geremia and Philippe Choler

ISME J 3: 850-859; advance online publication, March 26, 2009; doi:10.1038/ismej.2009.20

Subject Category: Microbial ecology and functional diversity of natural habitats

Unique archaeal assemblages in the Arctic Ocean unveiled by massively parallel tag sequencing

Pierre E Galand, Emilio O Casamayor, David L Kirchman, Marianne Potvin and Connie Lovejoy

ISME J 3: 860-869; advance online publication, March 26, 2009; doi:10.1038/ismej.2009.23

Subject Category: Microbial ecology and functional diversity of natural habitats

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Short Communications

Microbe-Microbe and Microbe-Host Interactions

Rhizobitoxine producers gain more poly-3-hydroxybutyrate in symbiosis than do competing rhizobia, but reduce plant growth

William C Ratcliff and R Ford Denison

ISME J 3: 870-872; advance online publication, April 9, 2009; doi:10.1038/ismej.2009.38

Subject Category: Microbe-microbe and microbe-host interactions

Microbial Ecology and Functional Diversity of Natural Habitats

Pyrococcus CH1, an obligate piezophilic hyperthermophile: extending the upper pressure-temperature limits for life

Xiang Zeng, Jean-Louis Birrien, Yves Fouquet, Georgy Cherkashov, Mohamed Jebbar, Joël Querellou, Philippe Oger, Marie-Anne Cambon-Bonavita, Xiang Xiao and Daniel Prieur

ISME J 3: 873-876; advance online publication, March 19, 2009; doi:10.1038/ismej.2009.21

Subject Category: Microbial ecology and functional diversity of natural habitats

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