TABLE OF CONTENTS
Volume 3, Issue 10 (October 2009)
Commentary
Bias in assessments of marine SAR11 biodiversity in environmental fosmid and BAC libraries?
Roi Feingersch and Oded Béjà
ISME J 3: 1117-1119; advance online publication, July 2, 2009; doi:10.1038/ismej.2009.80
Original Articles
Microbial population and community ecology
Rumen-like methanogens identified from the crop of the folivorous South American bird, the hoatzin (Opisthocomus hoazin)
André-Denis G Wright, Korinne S Northwood and Nestor E Obispo
ISME J 3: 1120-1126; advance online publication, April 23, 2009; doi:10.1038/ismej.2009.41
Subject Category: Microbial population and community ecology
Comparison of rhizobacterial community composition in soil suppressive or conducive to tobacco black root rot disease
Martina Kyselková, Jan Kopecký, Michele Frapolli, Geneviève Défago, Markéta Ságová-Mare
ková, Geneviève L Grundmann and Yvan Moënne-Loccoz
ISME J 3: 1127-1138; advance online publication, June 25, 2009; doi:10.1038/ismej.2009.61
Abstract | Full Text | PDF | Supplementary information
Subject Category: Microbial population and community ecology
Bacteriophage lytic to Desulfovibrio aespoeensis isolated from deep groundwater
Hallgerd S C Eydal, Sara Jägevall, Malte Hermansson and Karsten Pedersen
ISME J 3: 1139-1147; advance online publication, June 11, 2009; doi:10.1038/ismej.2009.66
Abstract | Full Text | PDF | Supplementary information
Subject Category: Microbial population and community ecology
Seasonality and vertical structure of microbial communities in an ocean gyre
Alexander H Treusch, Kevin L Vergin, Liam A Finlay, Michael G Donatz, Robert M Burton, Craig A Carlson and Stephen J Giovannoni
ISME J 3: 1148-1163; advance online publication, June 4, 2009; doi:10.1038/ismej.2009.60
Abstract | Full Text | PDF | Supplementary information
Subject Category: Microbial population and community ecology
Microbe-microbe and microbe-host interactions
Control and benefits of CP4-57 prophage excision in Escherichia coli biofilms
Xiaoxue Wang, Younghoon Kim and Thomas K Wood
ISME J 3: 1164-1179; advance online publication, May 21, 2009; doi:10.1038/ismej.2009.59
Abstract | Full Text | PDF | Supplementary information
Subject Category: Microbe-microbe and microbe-host interactions
Evolutionary genetics
The slow:fast substitution ratio reveals changing patterns of natural selection in 
-proteobacterial genomes
B Jesse Shapiro and Eric Alm
ISME J 3: 1180-1192; advance online publication, May 21, 2009; doi:10.1038/ismej.2009.51
Abstract | Full Text | PDF | Supplementary information
Subject Category: Evolutionary genetics
Integrated genomics and post-genomics approaches in microbial ecology
Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria
Kevin Penn, Caroline Jenkins, Markus Nett, Daniel W Udwary, Erin A Gontang, Ryan P McGlinchey, Brian Foster, Alla Lapidus, Sheila Podell, Eric E Allen, Bradley S Moore and Paul R Jensen
ISME J 3: 1193-1203; advance online publication, May 28, 2009; doi:10.1038/ismej.2009.58
Abstract | Full Text | PDF | Supplementary information
Subject Category: Integrated genomics and post-genomics approaches in microbial ecology
Microbial ecosystem impacts
Specific rhizosphere bacterial and fungal groups respond differently to elevated atmospheric CO2
Barbara Drigo, Johannes A van Veen and George A Kowalchuk
ISME J 3: 1204-1217; advance online publication, June 18, 2009; doi:10.1038/ismej.2009.65
Abstract | Full Text | PDF | Supplementary information
Subject Category: Microbial ecosystem impacts
Short Communication
Microbial population and community ecology
Phylogenetic composition and properties of bacteria coexisting with the fungus Hypholoma fasciculare in decaying wood
Vendula Valá
ková, Wietse de Boer, Paulien J A Klein Gunnewiek, Martin Pospíek and Petr Baldrian
ISME J 3: 1218-1221; advance online publication, June 11, 2009; doi:10.1038/ismej.2009.64
Abstract | Full Text | PDF | Supplementary information
Subject Category: Microbial population and community ecology
