Microbial ecology and functional diversity of natural habitats

• 2008
• 2007

2008

Direct analysis of tfdA gene expression by indigenous bacteria in phenoxy acid amended agricultural soil
Jacob Bælum, Mette H Nicolaisen, William E Holben, Bjarne W Strobel, Jan Sørensen and Carsten S Jacobsen
The ISME Journal 2, 677-687

Nitrogen fixation in an anticyclonic eddy in the oligotrophic North Pacific Ocean
Allison A Fong, David M Karl, Roger Lukas, Ricardo M Letelier, Jonathan P Zehr and Matthew J Church
The ISME Journal 2, 663-676

Widespread distribution of proteorhodopsins in freshwater and brackish ecosystems
Nof Atamna-Ismaeel, Gazalah Sabehi, Itai Sharon, Karl-Paul Witzel, Matthias Labrenz, Klaus Jürgens, Tamar Barkay, Maayke Stomp, Jef Huisman and Oded Beja
The ISME Journal 2, 656-662

Viruses in granitic groundwater from 69 to 450 m depth of the Äspö hard rock laboratory, Sweden
Jennifer E Kyle, Hallgerd S C Eydal, F Grant Ferris and Karsten Pedersen
The ISME Journal 2, 571-574

Nitrogen fixation by phyllosphere bacteria associated with higher plants and their colonizing epiphytes of a tropical lowland rainforest of Costa Rica
Michael Fürnkranz, Wolfgang Wanek, Andreas Richter, Guy Abell, Frank Rasche and Angela Sessitsch
The ISME Journal 2, 561-570

Substrate-induced growth and isolation of Acidobacteria from acidic Sphagnum peat
Timofei A Pankratov, Yulia M Serkebaeva, Irina S Kulichevskaya, Werner Liesack and Svetlana N Dedysh
The ISME Journal 2, 551-560

The life history of the plant pathogen Pseudomonas syringae is linked to the water cycle
Cindy E Morris, David C Sands, Boris A Vinatzer, Catherine Glaux, Caroline Guilbaud, Alain Buffière, Shuangchun Yan, Hélène Dominguez and Brian M Thompson
The ISME Journal 2, 321-334

Sources of edaphic cyanobacterial diversity in the Dry Valleys of Eastern Antarctica
Susanna A Wood, Andreas Rueckert, Donald A Cowan and S Craig Cary
The ISME Journal 2, 308-320

Effects of aboveground grazing on coupling among nitrifier activity, abundance and community structure
Xavier Le Roux, Franck Poly, Pauline Currey, Claire Commeaux, Brigitte Hai, Graeme W Nicol, James I Prosser, Michael Schloter, Eléonore Attard and Katja Klumpp
The ISME Journal 2, 221-232

Temporal evolution of methane cycling and phylogenetic diversity of archaea in sediments from a deep-sea whale-fall in Monterey Canyon, California
Shana K Goffredi, Regina Wilpiszeski, Ray Lee and Victoria J Orphan
The ISME Journal 2, 204-220

Interactions between bacterial carbon monoxide and hydrogen consumption and plant development on recent volcanic deposits
Gary M King and Carolyn F Weber
The ISME Journal 2, 195-203

2007

Fungal communities from methane hydrate-bearing deep-sea marine sediments in South China Sea
Xintian Lai, Lixiang Cao, Hongming Tan, Shu Fang, Yali Huang and Shining Zhou
The ISME Journal 1, 756-762

Primary producing prokaryotic communities of brine, interface and seawater above the halocline of deep anoxic lake L'Atalante, Eastern Mediterranean Sea
Michail M Yakimov, Violetta La Cono, Renata Denaro, Giuseppe D'Auria, Franco Decembrini, Kenneth N Timmis, Peter N Golyshin and Laura Giuliano
The ISME Journal 1, 743-755

The use of stable isotope probing to identify key iron-reducing microorganisms involved in anaerobic benzene degradation
Umakanth Kunapuli, Tillmann Lueders and Rainer U Meckenstock
The ISME Journal 1, 643-653

Links between bacterial production, amino-acid utilization and community composition in productive lakes
Stefan Bertilsson, Alexander Eiler, Anneli Nordqvist and Niels Ole Gerslev Jørgensen
The ISME Journal 1, 532-544

High diversity of bacterial mercuric reductase genes from surface and sub-surface floodplain soil (Oak Ridge, USA)
Gunnar Oregaard and Søren J Sørensen
The ISME Journal 1, 453-467

Effects of cattle husbandry on abundance and activity of methanogenic archaea in upland soils
Viviane Radl, Andreas Gattinger, Alica Chroáková, Anna Nmcová, Jiri uhel, Miloslav imek, Jean Charles Munch, Michael Schloter and Dana Elhottová
The ISME Journal 1, 443-452

Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site
Ulrich Stingl, Harry James Tripp and Stephen J Giovannoni
The ISME Journal 1, 361-371

Cultivation of a novel cold-adapted nitrite oxidizing betaproteobacterium from the Siberian Arctic
Mashal Alawi, André Lipski, Tina Sanders,  Eva-Maria-Pfeiffer and Eva Spieck
The ISME Journal 1, 256-264

Characterization of filamentous bacteria, belonging to candidate phylum KSB3, that are associated with bulking in methanogenic granular sludges
Takeshi Yamada, Toshihiro Yamauchi, Koji Shiraishi, Philip Hugenholtz, Akiyoshi Ohashi, Hideki Harada, Yoichi Kamagata, Kazunori Nakamura and Yuji Sekiguchi
The ISME Journal 1, 246-255

Diazotrophic bacterioplankton in a coral reef lagoon: phylogeny, diel nitrogenase expression and response to phosphate enrichment
Ian Hewson, Pia H Moisander, Amanda E Morrison and Jonathan P Zehr
The ISME Journal 1, 78-91