Integrated genomics and post-genomics approaches in microbial ecology
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A rare SAR11 fosmid clone confirming genetic variability in the 'Candidatus Pelagibacter ubique' genome
Jack A Gilbert, Martin Mühling and Ian Joint
The ISME Journal 2, 790-793
Microarray-based whole-genome hybridization as a tool for determining procaryotic species relatedness
Liyou Wu, Xueduan Liu, Matthew W Fields, Dorothea K Thompson, Christopher E Bagwell, James M Tiedje, Terry C Hazen and Jizhong Zhou
The ISME Journal 2, 642-655
Insights learned from pBTAi1, a 229-kb accessory plasmid from Bradyrhizobium sp. strain BTAi1 and prevalence of accessory plasmids in other Bradyrhizobium sp. strains
Eddie J Cytryn, Siriluck Jitacksorn, Eric Giraud and Michael J Sadowsky
The ISME Journal 2, 158-170
2007
Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses
Devaki Bhaya, Arthur R Grossman, Anne-Soisig Steunou, Natalia Khuri, Frederick M Cohan, Natsuko Hamamura, Melanie C Melendrez, Mary M Bateson, David M Ward and John F Heidelberg
The ISME Journal 1, 703-713
Soil eukaryotic functional diversity, a metatranscriptomic approach
Julie Bailly, Laurence Fraissinet-Tachet, Marie-Christine Verner, Jean-Claude Debaud, Marc Lemaire, Micheline Wésolowski-Louvel and Roland Marmeisse
The ISME Journal 1, 632-642
Viral photosynthetic reaction center genes and transcripts in the marine environment
Itai Sharon, Shani Tzahor, Shannon Williamson, Michael Shmoish, Dikla Man-Aharonovich, Douglas B Rusch, Shibu Yooseph, Gil Zeidner, Susan S Golden, Shannon R Mackey, Noam Adir, Uri Weingart, David Horn, J Craig Venter, Yael Mandel-Gutfreund and Oded Béjà
The ISME Journal 1, 492-501
Fosmids of novel marine Planctomycetes from the Namibian and Oregon coast upwelling systems and their cross-comparison with planctomycete genomes
Dagmar Woebken, Hanno Teeling, Patricia Wecker, Alexandra Dumitriu, Ivaylo Kostadinov, Edward F DeLong, Rudolf Amann and Frank O Glöckner
The ISME Journal 1, 419-435
Sequence-based analysis of pQBR103; a representative of a unique, transfer-proficient mega plasmid resident in the microbial community of sugar beet
Adrian Tett, Andrew J Spiers, Lisa C Crossman, Duane Ager, Lena Ciric, J Maxwell Dow, John C Fry, David Harris, Andrew Lilley, Anna Oliver, Julian Parkhill, Michael A Quail, Paul B Rainey, Nigel J Saunders, Kathy Seeger, Lori A S Snyder, Rob Squares, Christopher M Thomas, Sarah L Turner, Xue-Xian Zhang, Dawn Field and Mark J Bailey
The ISME Journal 1, 331-340
Distribution and diversity of phytate-mineralizing bacteria
Boon Leong Lim, Pok Yeung, Chiwai Cheng and Jane Emily Hill
The ISME Journal 1, 321-330
Genomic plasticity in prokaryotes: the case of the square haloarchaeon
Sara Cuadros-Orellana, Ana-Belen Martin-Cuadrado, Boris Legault, Giuseppe D'Auria, Olga Zhaxybayeva, R Thane Papke and Francisco Rodriguez-Valera
The ISME Journal 1, 235-245
Functional metaproteome analysis of protein extracts from contaminated soil and groundwater
Dirk Benndorf, Gerd U Balcke, Hauke Harms and Martin von Bergen
The ISME Journal 1, 224-234
GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes
Zhili He, Terry J Gentry, Christopher W Schadt, Liyou Wu, Jost Liebich, Song C Chong, Zhijian Huang, Weimin Wu, Baohua Gu, Phil Jardine, Craig Criddle and Jizhong Zhou
The ISME Journal 1, 67-77
