Original Article
Immunology and Cell Biology (2008) 86, 676–687; doi:10.1038/icb.2008.60; published online 19 August 2008
Simulating T-cell motility in the lymph node paracortex with a packed lattice geometry
Gib Bogle1,2 and P Rod Dunbar1,3
- 1Maurice Wilkins Centre, University of Auckland, Auckland, New Zealand
- 2Bioengineering Institute, University of Auckland, Auckland, New Zealand
- 3School of Biological Sciences, University of Auckland, Auckland, New Zealand
Correspondence: Dr G Bogle, Bioengineering Institute, University of Auckland, Private Bag 92-019, Auckland 1142, New Zealand. E-mail: g.bogle@auckland.ac.nz
Received 23 April 2008; Revised 13 July 2008; Accepted 13 July 2008; Published online 19 August 2008.
Abstract
Agent-based simulation modelling of T-cell trafficking, activation and proliferation in the lymph node paracortex requires a model for cell motility. Such a model must be able to reproduce the observed random-walk behaviour of T cells, while accommodating large numbers of tightly packed cells, and must be computationally efficient. We report the development of a motility model, based on a three-dimensional lattice geometry, that meets these objectives. Cells make discrete jumps between neighbouring lattice sites in directions that are randomly determined from specified discrete probability distributions, which are defined by a small number of parameters. It is shown that the main characteristics of the random motion of T cells as typically observed in vivo can be reproduced by suitable specification of model parameters. The model is computationally highly efficient and provides a suitable engine for a model capable of simulating the full T-cell population of the paracortex.
Keywords:
lattice, motility, random walk, simulation, T cell
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