Original Article

Immunology and Cell Biology (2008) 86, 676–687; doi:10.1038/icb.2008.60; published online 19 August 2008

Simulating T-cell motility in the lymph node paracortex with a packed lattice geometry

Gib Bogle1,2 and P Rod Dunbar1,3

  1. 1Maurice Wilkins Centre, University of Auckland, Auckland, New Zealand
  2. 2Bioengineering Institute, University of Auckland, Auckland, New Zealand
  3. 3School of Biological Sciences, University of Auckland, Auckland, New Zealand

Correspondence: Dr G Bogle, Bioengineering Institute, University of Auckland, Private Bag 92-019, Auckland 1142, New Zealand. E-mail: g.bogle@auckland.ac.nz

Received 23 April 2008; Revised 13 July 2008; Accepted 13 July 2008; Published online 19 August 2008.

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Abstract

Agent-based simulation modelling of T-cell trafficking, activation and proliferation in the lymph node paracortex requires a model for cell motility. Such a model must be able to reproduce the observed random-walk behaviour of T cells, while accommodating large numbers of tightly packed cells, and must be computationally efficient. We report the development of a motility model, based on a three-dimensional lattice geometry, that meets these objectives. Cells make discrete jumps between neighbouring lattice sites in directions that are randomly determined from specified discrete probability distributions, which are defined by a small number of parameters. It is shown that the main characteristics of the random motion of T cells as typically observed in vivo can be reproduced by suitable specification of model parameters. The model is computationally highly efficient and provides a suitable engine for a model capable of simulating the full T-cell population of the paracortex.

Keywords:

lattice, motility, random walk, simulation, T cell

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