Heredity

TABLE 1

FROM:

Genealogy of wine grape cultivars: 'Pinot' is related to 'Syrah'

J F Vouillamoz and M S Grando

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Table 1. Relationship categories assignment

Pairs of cultivars   Coefficients LRs Relationship category assignment a
  IBS PhiDeltar  IBS IBD LRs
Established PO      PO/FS    
 Pinot-P times S1b 601.093 (0.083)-0.081 (0.071)0.466 (0.037)9.7 times 105 POPOPO
 Pinot-P times S2600.768 (0.084)0.187 (0.084)0.571 (0.046)3.9 times 100 POPO-FS?PO
 Pinot-P times S3601.005 (0.085)-0.007 (0.078)0.495 (0.042)3.6 times 103 POPOPO
 Syrah-P times S1600.856 (0.104)0.198 (0.091)0.626 (0.044)3.5 times 100 POPO-FS?PO
 Syrah-P times S2600.861 (0.096)0.138 (0.095)0.569 (0.050)7.2 times 101 POPO-FS?PO
 Syrah-P times S3601.061 (0.085)-0.034 (0.076)0.496 (0.040)3.4 times 105 POPOPO
 Syrah-Dureza601.060 (0.062)-0.120 (0.051)0.410 (0.028)8.8 times 105 POPOPO
 Syrah-Mondeuse Bl.601.011 (0.071)-0.060 (0.064)0.446 (0.035)6.5 times 104 POPOPO
         
Putative PO         
 Teroldego–Lagrein600.740 (0.091)0.237 (0.088)0.607 (0.047)1.6 times 100 POPO-FS?PO
 Teroldego–Marzemino580.821 (0.076)0.103 (0.076)0.513 (0.043)1.9 times 102 POPOPO
         
Established FS      FS/2°    
 P times S1-P times S2580.689 (0.114)0.236 (0.090)0.580 (0.058)2.1 times 105 FSFSFS
 P times S1-P times S3550.728 (0.123)0.120 (0.090)0.484 (0.064)1.8 times 101 FSPO-FS?FS
 P times S2-P times S3520.470 (0.136)0.245 (0.086)0.480 (0.072)5.8 times 102 FSFSFS
         
Putative FS         
 Teroldego–Dureza550.680 (0.123)0.064 (0.075)0.404 (0.059)1.1 times 100 FSFSFS
 Lagrein–Marzemino530.483 (0.143)0.140 (0.077)0.382 (0.071)2.7 times 100 FSFSFS
         
Established 2°      2°/3°    
 Dureza-P times S1520.570 (0.157)-0.023 (0.059)0.262 (0.064)9.0 times 100
 Dureza-P times S2580.849 (0.104)0.051 (0.072)0.475 (0.049)1.5 times 103 PO
 Dureza-P times S3520.684 (0.161)-0.047 (0.061)0.295 (0.062)6.9 times 100
 Mondeuse Bl.-P times S1490.635 (0.158)-0.070 (0.056)0.247 (0.067)8.7 times 100
 Mondeuse Bl.-P times S2420.262 (0.176)-0.036 (0.052)0.094 (0.072)4.0 times 10-2
 Mondeuse Bl.-P times S3450.199 (0.172)0.031 (0.060)0.130 (0.073)1.4 times 100
         
Putative 2°         
 Teroldego–Pinot530.672 (0.148)-0.089 (0.053)0.247 (0.059)1.2 times 101 FS
 Pinot–Dureza530.519 (0.156)0.028 (0.062)0.287 (0.069)1.1 times 101 FS
 Lagrein–Pinot530.649 (0.146)-0.047 (0.060)0.278 (0.060)1.4 times 101 FS
 Marzemino–Dureza490.377 (0.151)0.055 (0.064)0.243 (0.070)3.5 times 10-1 >3°
 Teroldego–Syrah490.526 (0.144)0.016 (0.060)0.279 (0.060)4.5 times 100
 Lagrein–Dureza480.602 (0.157)-0.089 (0.046)0.212 (0.061)2.4 times 100
 Pinot–Syrah470.414 (0.159)-0.041 (0.053)0.166 (0.068)5.4 times 10-1 2°–3°>3°
 Marzemino–Pinot450.314 (0.164)0.021 (0.058)0.178 (0.072)2.9 times 10-1 2°–3°>3°
 Lagrein–Syrah430.318 (0.176)-0.027 (0.059)0.132 (0.075)1.0 times 10-1 >2°2°–3°>3°
 Marzemino–Syrah430.102 (0.171)0.082 (0.064)0.133 (0.083)1.0 times 10-2 >2°>3°>3°
 Marzemino–Mondeuse Bl.430.172 (0.173)-0.053 (0.045)0.032 (0.067)ND>2°>3°>3°
 Pinot–Mondeuse Bl.34-0.050 (0.196)-0.046 (0.042)-0.071 (0.076)ND>2°>3°>3°
 Dureza–Mondeuse Bl.34-0.291 (0.165)-0.009 (0.041)-0.155 (0.063)ND>2°>3°>3°
 Lagrein–Mondeuse Bl.37-0.028 (0.175)-0.013 (0.045)-0.028 (0.067)ND>2°>3°>3°
 Teroldego–Mondeuse Bl.35-0.152 (0.170)-0.004 (0.048)-0.080 (0.070)ND>2°>3°>3°

 The number of alleles identical by state (IBS) out of 60 microsatellite markers, the mean values of two-gene (Phi) and four-gene (Delta) coefficients of identity by descent (IBD) and of coefficients of relatedness (r) of all putative pairs of cultivars were compared to the values of established relationships (PO=parent–offspring, FS=full-siblings, 2°=second-degree relatives, 3°=third-degree relatives). These relationship categories were then assessed for each pair by calculating the likelihood ratios (LRs) between the proposed relationship and the next competing category. This made possible the assignment of the most likely relationship category.

a A hyphen denotes intermediate values between possible relationship categories. The sign >denotes a more distant relationship category. Almost unrelated pairs are denoted ND.

b P times S: 'Pinot' times 'Syrah' deliberate crosses.

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