Full Paper
Genes and Immunity (2005) 6, 472–480. doi:10.1038/sj.gene.6364231; published online 2 June 2005
TNF as a malaria candidate gene: polymorphism-screening and family-based association analysis of mild malaria attack and parasitemia in Burkina Faso
L Flori1, N F Delahaye1, F A Iraqi2, M Hernandez-Valladares2, F Fumoux1 and P Rihet1
- 1Laboratoire d'immunogénétique et de pharmacologie du paludisme-EA 864, Faculté de Pharmacie, Université de la Méditerranée, IFR 48, Marseille Cedex, France
- 2International Livestock Research Institute, Nairobi, Kenya
Correspondence: Dr P Rihet, Laboratoire d'immunogénétique et de pharmacologie du paludisme-EA 864, Faculté de Pharmacie, Université de la Méditerranée, IFR 48, 27 Bd Jean Moulin 13385 Marseille Cedex 5, France. E-mail: rihet@luminy.univ-mrs.fr
Received 12 January 2005; Revised 24 March 2005; Accepted 6 April 2005; Published online 2 June 2005.
Abstract
We have previously obtained strong evidence for linkage of mild malaria attack to the MHC region, with a peak close to the tumor necrosis factor (TNF) gene. We screened, for polymorphisms, the entire TNF gene in the same sample of 34 families comprising 197 individuals living in a Plasmodium falciparum endemic area and we found 17 polymorphisms. In a longitudinal study, we investigated whether the 11 most frequent and informative polymorphisms were associated with mild malaria attack and maximum parasitemia, which was the highest parasitemia in each individual over 2 years. Mild malaria attack and maximum parasitemia were positively correlated. Transmission disequilibrium tests showed nominal evidence for association between TNF-1031, TNF-308, TNF851 and TNF1304 polymorphisms, and mild malaria attack on the one hand, and between TNF-238, TNF851 and TNF1304 polymorphisms, and maximum parasitemia on the other hand. After accounting for multiple tests, we confirmed the association of TNF-238 with maximum parasitemia and the association of TNF1304 and TNF851 with maximum parasitemia and mild malaria attack. The association tests with mild malaria attack suggest a moderate effect of TNF-308 polymorphism. In conclusion, our study suggests that several TNF variants may be part of the genetic determinants for maximum parasitemia and/or mild malaria attack.
Keywords:
P. falciparum, mild malaria attacks, parasitemia, tumor necrosis factor, genetic linkage, association
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