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meeting report
EMBO reports 4, 9, 838–843 (2003)
doi:10.1038/sj.embor.embor924
AOP Published online: 22 August 2003

Shedding light on bioscience

Symposium on Optical Imaging: Applications to Biology and Medicine

Mary J. Cole1, Melinda Pirity2, 3 & Anna-Katerina Hadjantonakis4
1 Department of Physiology, Genentech Inc., 1 DNA Way, San Francisco, California 94080, USA
2 Department of Molecular Genetics, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, New York 10461, USA
3 Institute of Genetics, Biological Research Center of the Hungarian Academy of Sciences, PO Box 521, Szeged 6701, Hungary
4 Department of Genetics and Development, College of Physicians and Surgeons of Columbia University, 701 West 168th Street, New York, New York 10032, USA

To whom correspondence should be addressed
Anna-Katerina Hadjantonakis Tel: +1 212 305 4791; Fax: +1 212 923 2090; akh39@columbia.edu


Received 31 March 2003; Accepted 22 July 2003; Published online 22 August 2003.
Meeting poster
This dynamic symposium, held on 11–16 February 2003 in Taos, New Mexico, was the first Keystone meeting to focus on optical techniques and their use in biology and medicine. It was organized by D. Becker, D. Farkas and S. Fraser and attracted almost 100 participants from both academia and industry. Fluorescence imaging and its applications, ranging from nano-bioscience to small-animal imaging and imaging of disease progression in humans, were the main topics, with opportunities for further discussion in the cantinas of the town and on the ski slopes of Taos mountain.
Introduction

Advances in molecular and cellular biology techniques, combined with concomitant developments in a kaleidoscope of biologically specific fluorescent markers, improvements in detector sensitivity and the design of dedicated small-animal imaging systems, has resulted in a powerful toolbox to visualize and quantify biological processes at the cellular and subcellular level, in both in vitro and intact living organisms. More specifically, imaging of cellular and molecular processes, such as gene expression and protein–protein interactions, monitoring of cell trafficking and targeting, optimization of drug and gene therapy and assessment of development and disease progression, are all now possible using optical techniques. Presentations at the 'Keystone Symposium on Optical Imaging' covered all of these aspects.

Probes and techniques for dynamic cellular imaging
R. Tsien (San Diego, CA, USA) gave the keynote address and set the stage for the meeting by illustrating the broad applicability and superior sensitivity of many newly developed fluorescent probes (Zhang et al., 2002). He introduced the Aequoria victoria-derived green fluorescent protein (GFP) and spoke of recent efforts to expand its repertoire through the generation of biologically compatible spectral variants. Several of these wavelength-shifted fluorescent proteins have been developed in Tsien's laboratory, including 'Citrine', a yellow fluorescent protein (YFP) mutant with reduced pH sensitivity and superior photostability compared with other YFPs. Tsien also discussed how recent work from his lab has succeeded in generating a monomeric red fluorescent protein, mRFP1.

Real-time functional imaging of live specimens demands reporter assays that function as a direct read-out of a physiological process. Tsien described how fluorescence resonance energy transfer (FRET)-based assays might be exploited for these purposes. Briefly, FRET measures the energy transfer between two chromophores (donor and acceptor) whose emission spectrum and absorption spectrum, respectively, overlap. The degree of energy transfer is highly distance dependent and is therefore useful for monitoring changes in the interaction and conformation of the molecules. Tsien described the use of FRET in several assays that use the visible fluorescent proteins cyan (CFP) and YFP as the donor and acceptor, respectively, one of which was used to measure kinase/phosphatase activity.

He went on to describe the biarsenical–tetracysteine system, an alternative to fluorescent-protein labelling. Here, a non-fluorescent membrane-permeable biarsenical dye, FIAsH (fluorescent arsenical helix binder; 508/528 nm) or ReAsH (resorufin-based red arsenical helix binder; 593/608 nm), is engineered so that it forms a fluorescent covalent complex with any intracellular protein that contains a short engineered tetracysteine motif. This small peptide tagged onto the end of, or possibly even integrated into, a protein sequence enables biarsenical dyes to bind. This is especially useful in cases in which the comparatively large size of fluorescent proteins might hinder wild-type protein function. He illustrated the potential of this system through a 'pulse-chase' experiment, in which sequential labelling with different biarsenical dyes was used to follow the dynamics of connexin-43 protein turnover at the gap junctions of cells grown in culture. ReAsH is particularly promising as it can also be used for electron microscopy, and therefore represents a genetically encoded targetable tag that, under intense illumination, can oxidize diamenobenzine (DAB) into a polymer that can be stained with osmium tetroxide.

T. Jovin (Göttingen, Germany) also disussed many of the probes from Tsien's talk, particularly fluorescent proteins. He warned that the accuracy of FRET is often compromised by the lack of a priori knowledge about the amount of chromophore present, and, when used in an imaging configuration, by the difficulty of quantifying FRET efficiencies for every pixel in the field of view. He presented two approaches for circumventing these limitations; energy migration FRET (emFRET) and photochromic FRET (pcFRET; Fig. 1). In emFRET (Clayton et al., 2002), a single label with a small 'Stokes shift' (the difference in wavelength between excitation maximum and fluorescence emission maximum) is used. The interchange of excitation energy between identical molecules is probed by measuring the change in emission anisotropy (the change in polarization between the excitation light and emitted fluorescence) due to homotransfer (concentration depolarization). This incarnation of FRET improves the ease and reliability of fluorophore concentration measurements without the need for cumbersome calibration of fluorescence signals, cell numbers and cell size. Jovin's group is applying this technique to assess dimerization of erbB (erythroblastic leukaemia viral oncogene homologue) receptor tyrosine kinases on cell surfaces. pcFRET involves the use of specially designed acceptor molecules whose absorption state can be reversibly switched in response to illumination at a particular wavelength (Fig. 1A,B). By switching the molecule between the two states, FRET can be switched on and off in a localized and reversible manner. Thus, a reference measurement (donor fluorescence only, FRET off) can be made in addition to the FRET-induced acceptor-fluorescence signal. As this process is reversible, re-examination of the same region at different time points is possible (Fig. 1C,D). Repeated quantitative FRET measurements are therefore possible, even under the unknown donor–acceptor stoichiometries that are typical in microscopy experiments. It is expected that the pcFRET approach will be extended to include the development of nucleic acid and intramolecular protein-based FRET probes, thus complementing the abilities of the FlAsH and ReAsH labels described by Tsien.

Figure 1
Figure 1
Photochromic FRET. (A) The photochromic compound (a diheteroarylethene) is converted from a colourless open form to a fluorescence resonance energy transfer (FRET)-competent acceptor closed form on irradiation with ultraviolet (UV) light. The open form lacks absorbance in the visible range. Thus, the overlap with the emission of the donor (in this example, Lucifer Yellow covalently coupled to the acceptor) is negligible. (B) The acceptor (closed form) absorbance overlaps well with the donor emission and FRET is possible. (C) Donor emission spectra for the two states of the acceptor. (D) Multiple FRET cycles generated by alternating exposure to UV and visible light.
S. Simon (New York, NY, USA) discussed recent work using quantum dots (QDs), which have recently emerged as useful markers for biological applications (Chan et al., 2002). QDs are semiconductor nanocrystals approx10–15 nm in diameter and are perhaps one of the best recent examples of technology migration from the physics laboratory into the domain of biology. Initial QD research focused on the photophysics of these nanostructures and their potential application in micro- and optoelectronics. However, more recent developments in coating technology have resulted in biocompatible QDs that are non-toxic, have more specific binding properties and are stable for long periods in the watery cellular milieu. Variations in the size of the QD result in a change in its fluorescence-emission wavelength, with larger dots having longer emission wavelengths. In addition, dots of all sizes can be excited with a single source in the ultraviolet/blue range of the spectrum. This spectral versatility, combined with improved biocompatibility, is opening the door to the use of QDs for a variety of multicolour imaging experiments in the cell and developmental biology arenas. Other advantages are that QDs are resistant to photobleaching, have quantum efficiencies that exceed those of most organic dyes, and can be coupled to biomolecules of interest. Simon discussed the use of QDs for the long-term imaging of multiple fluorophores in living cells (Jaiswal et al., 2003), in the context of his work on the dynamics of molecules involved in signal transduction and exo- and endocytosis. In addition to discussing the use of QDs as labels, he highlighted the virtues of total internal reflection fluorescence microscopy (TIR-FM) for live-cell imaging. Simon showed that this technique allows the acquisition of high-resolution images with high signal-to-noise ratios in real-time, which are all necessary to resolve the detailed kinetics of individual cell-surface events (Rappoport & Simon, 2003).

Intense interest in QDs provoked an impromptu open-microphone session during which potential future applications of QDs were discussed, along with a few caveats. Because of their bright, spectrally narrow fluorescence emission and the increasing availability of QDs at longer wavelengths, it is anticipated that QDs will allow direct translation of cell-based assays into in vivo animal imaging investigations. Caveats include the possibility that the blinking (such that fluorescence emission is not constant) of quantum dots will preclude their use for some applications, for example, fluorescence correlation spectroscopy. Concerns were also raised about their potential to form aggregates, their significant size, and whether they could be targeted to confined subcellular compartments. Despite these limitations, QDs will probably come to the fore as widely used markers for several biological applications.

D. Walt (Boston, MA, USA) described his most recent work on the development of high-density optical fibre arrays for cell-based sensing. By etching the face of a fibre bundle, high-density arrays of microwells can be formed in which single cells can be trapped. Trapping cells that have been genetically modified to respond to a specific analyte results in a biosensor that can be used to monitor, for example, the expression of different reporter genes. Walt also discussed the possibility that this work could be extended to include cell selection using optical tweezers.

A final talk on the cellular applications of optical imaging was given by R. Singer (Bronx, NY, USA). He described the concurrent visualization of gene expression and dynamic nuclear structures to image the transcriptional states of individual cells. This approach links cell biology and genetics by correlating sub-nuclear physical topology with gene expression (Levsky & Singer, 2003). The methodology combines advances in computational fluorescence microscopy with multiplexed fluorescent probe design, and facilitates the visualization of several genes in situ at high resolution (Fig. 2A). Interestingly, Singer showed that population variability is often observed, as variable subsets of genes are actively transcribed in individual cell nuclei within a single population.

Figure 2
Figure 2
Multimodal images. (A) Simultaneous detection of many genes in a single human colon adenocarcinoma cell G2 nucleus (DAPI stained) with a pseudo-coloured representation of 17 transcription sites detected in situ. The image is 'flattened' so that all 12 of the 0.5-mum Z sections are displayed on the background, which is the DAPI counterstain from the middle image of the stack. Gene identity is denoted by colour and the Z location is recorded by the adjoining number. Lower numbers represent closer proximity to the cover slip. (B) Two colour-coded depth projections generated from a stack of multiphoton laser scanning microscopy Z sections taken through a 6.5-day-old mouse embryo constitutively expressing a histone–green fluorescent protein fusion. Colours denote fluorescence at different depths of the Z stack. (C) Two images of 9.5-day-old mouse embryos. Surface view (top) and an embryo with a sagittal cut exposing internal structures (bottom). The technique used to produce these images is surface-imaging microscopy and the images were rendered in ResView 3.1. (D) Imaging tumour burden and annexin-V binding after a single dose of chemotherapy. In vivo bioluminescence imaging was used to assess tumour burden in an orthotopic lymphoma model as a means of standardizing treatment groups before chemotherapy (whole-body image in background). After therapy, 9mTc-annexin-V binding was imaged using bioluminescence imaging to assess chemotherapy-induced tumour-cell death in the same animal. (E) Three-dimensional model highlighting portions of the limbic system of the adult human brain. Similar models have been generated for the mouse brain. These models can be measured morphometrically and can also be used to represent population statistics. K, kidney; SP, spleen.
In vivo embryo and animal imaging
The need to translate the sensitivity and specificity of fluorescence-based cellular-imaging techniques into those used for transgenic animal models, and potentially into a clinical setting, was acknowledged by many of the meeting participants. In particular, the availability and relative ease of generating mutants, combined with the establishment of protocols for in vitro culture and the optical transparency of developing vertebrate embryos, make genetically encoded fluorescent proteins ideal markers for developmental biology applications (Hadjantonakis et al., 2003).

Confocal laser scanning microscopy and multiphoton laser scanning microscopy (MPLSM) applied to embryogenesis were central to S. Fraser's (Pasadena, CA, USA) talk. Fraser showed that the fluorescent vital dye BODIPY ceramide could be used to follow the movement of cells in the region of the rhombic lip (the structure that ultimately gives rise to the cerebellum) in zebrafish embryos. He then went on to describe a yeast Gal4–VP16-based method for generating transgenic fish that robustly express fluorescent proteins, which permits in vivo imaging of individual cells. He also discussed the methodology of surface-imaging microscopy (Fig. 2C) for the high-resolution three-dimensional (3D) reconstructions of embryos (Ewald et al., 2002). Finally, experiments that pave the way for the unequivocal separation of spectrally overlapping fluorochromes using linear unmixing and emission and excitation fingerprinting were described.

M. Chalfie (New York, NY, USA), whose group was the first to use GFP in a heterologous system, spoke of recent work that integrates imaging and genetic approaches to explore the distribution and function of touch receptors in the nematode Caenorhabditis elegans; the transparency of this organism makes it well suited for imaging the expression of genetically encoded fluorescent proteins.

However, the mouse is now the premier mammalian model organism. K. Hadjantonakis (New York, NY, USA) described new strains of mice that express subcellularly localized fluorescent proteins, which facilitate high-resolution imaging in living embryos (Fig. 2B). E. Jones (Pasadena, CA, USA) spoke about the use of high-speed line-scanning techniques to determine blood flow velocities in living mouse embryos and illustrated this using a line of transgenic mice in which GFP is exclusively expressed in embryonic blood cells. Both Hadjantonakis and Jones discussed the development of whole- embryo in vitro culture protocols that enable time-lapse imaging of fluorescent proteins.

Fluorescent-protein-expressing mice and optical imaging techniques have greatly advanced the field of neurobiology in recent years (Lichtman & Fraser, 2001). Two talks discussed the use of optical imaging for monitoring the development of the nervous system in mice. L. Katz (Durham, NC, USA) showed the use of MPLSM for imaging the architecture of the mouse olfactory bulb. His work combined optical-imaging techniques with the use of genetically modified (fluorescent protein-expressing transgenic and knockout) mice, electrophysiology (targeted intracellular recordings) and neuroanatomy. Intrinsic signal imaging was performed through the thinned skull of a mouse and was used to investigate the spatial coding information within the olfactory epithelium, in which approximately 1,200 G-protein-coupled receptors are each expressed in distinct populations of sensory neurons. Different odorants elicit different responses by affecting only a subset of sensory neurons, and these axons converge on the main olfactory bulb where the information is processed. Katz described the success of his laboratory in mapping the responses to different molecules and mixtures, the latter being represented by the additive patterns of the constituent components, in wild-type and mutant mice.

J. Lichtman's (St Louis, MO, USA) talk focused on the use of a series of transgenic mice in which the Thy1 promoter drives expression of a variety of fluorescent proteins, which have a wide range of expression patterns presumably due to transgene position effects. Repeated imaging of a neuromuscular junction allowed the investigation of the dynamics of neuromuscular junction synapse formation. Lichtman was able to draw several important conclusions about the guidance of neurons during injury and about the basic mechanisms of neuronal branching and synapse maturation on the basis of these studies. For example, a large amount of branch retraction takes place during the first week after birth, during maturation of the nervous system, and axons branch into muscle fibres in newborn mice more than do those of 1-week-old pups.

M. Cahalan (Irvine, CA, USA) continued the intravital imaging theme. He described the use of MPLSM for the imaging of cells in the lymph nodes of living mice. Naive T cells were collected from donor animals, labelled and injected through the tail vein into recipient animals. Subsequent imaging and analysis of the velocities at which both T and B cells travel through the lymphatic system revealed that T-cell behaviour changed after antigen challenge. Extending this work to the imaging of dendritic cells allowed the dynamic interactions between T cells and the dendrites of dendritic cells to be visualized.

Imaging disease states: from animal models to humans
The discussion of imaging in mice was not limited to fluorescence techniques, and several talks were devoted to bioluminescence imaging (BLI; Contag & Ross, 2002). C. Contag (Stanford, CA, USA) gave an overview of recent advances in the field of small-animal luciferase imaging. Luciferase genes have been cloned from several organisms, including bacteria, firefly (Photinus pyralis) and coral (Renilla). In the firefly, the conversion of luciferin to oxyluciferin in the presence of a luciferase catalyst, ATP and oxygen results in emission of photons (bioluminescence). The resulting broad spectral emission peaks at 560 nm and includes a significant component greater than 600 nm, which makes it suitable for in vivo imaging. In the case of in vivo BLI, animal models (usually murine) are used, in which the biological entities of interest (for example, tumour cells and immune cells) express the luciferase gene (luc). The subsequent administration of luciferin, most commonly by intraperitoneal (i.p.) injection, results in the emission of photons from sites of luc expression. The photons are detected using sensitive cameras, such as intensified charged coupled devices (CCDs) or cooled, back-thinned CCDs. The potential for combining BLI with other imaging techniques was shown by S. Mandl (Stanford, CA, USA) who gave a short talk describing the use of BLI in combination with single-photon emission computed tomography for assessment of apoptosis and tumour-cell loss in mice (Fig. 2D).

In addition to describing the application of in vivo BLI to several disease models, including examples drawn from immunology, oncology and neuroscience, Contag discussed some of the challenges that still need to be overcome. The current two-dimensional (2D) planar-imaging configuration used in most laboratories is limited in its ability to provide true quantitative measurements of disease progression, for example tumour volume. Tomographic 3D reconstruction would provide a means of addressing this shortcoming and could potentially be achieved through a back-projection-based method as was presented at the meeting. Efforts to push the emission wavelength of firefly luciferase further into the red spectral range, thus improving its penetration of biological tissue, were also described. Modification of both the substrate and the substrate-binding cleft can push the emission wavelength to between 620 and 675 nm; however, at present, the resulting reduction in emission intensity outweighs any potential benefit of the wavelength increase.

T. Wyss-Coray (Stanford, CA, USA) discussed the use of a luciferase-based in vivo biosensor to monitor the transforming growth factor-beta (TGF-beta) signalling pathway. TGF-beta1 has been proposed to be a primary organizer of the central nervous system (CNS) injury response. In Alzheimer's disease, the variation in activation of TGF-beta1 prompted by cellular damage is thought to be the cause of variability in disease outcome. To gain insight into how TGF-beta and its signalling pathway are regulated in the CNS, transgenic mice expressing luciferase under the control of the TGF-beta responsive Smad-binding cis-acting element (SBE) were generated. In this study, a kainate-induced excitotoxic injury increased the bioluminescent signal in the hippocampus and cortex of SBE-luciferase mice, which, in turn, indicates that the TGF-beta1 signalling pathway targets gene expression in both these locations.

The neurodegenerative disease theme was continued by W. Pralong (Zurich, Switzerland), who discussed progress in the use of gene therapy for the treatment of Parkinson's disease. Pralong explained that the delivery of neurotrophic factors into the brain parenchyma is expected to result in neuroprotection and brain repair. However, because neurotrophic factors do not cross the blood–brain barrier, they must be administered by stereotactic injection of an encapsulated lentiviral vector into the brain. Pralong described his use of luciferase to monitor such gene therapy approaches. Glial-cell-derived neurotrophic factor (GDNF) was administered to mice, induced through tetracycline regulation and the resulting expression was monitored through the bioluminescence signal.

The above examples illustrate the huge volume of optical imaging data that is being produced. Indeed, the need for a multi-modal, multi-dimensional and multi-spectral atlas of mouse development was mentioned by S. Fraser. A. Toga (Los Angeles, CA, USA) presented a mouse atlas project that is already in progress (http://www.loni.ucla.edu/SVG/index.html), which has successfully combined micro-magnetic resonance imaging, histology, in situ hybridization and immunohistochemistry data into a digital atlas of the C57Bl/6 mouse brain. Through the use of incorporated image-processing tools, the atlas aims to facilitate the correlation of gene-expression patterns with anatomical and molecular information drawn from a variety of imaging technologies. Such a project is also being undertaken for the human brain (Fig. 2E).

Skin imaging was addressed in several presentations and posters. R. Anderson (Boston, MA, USA) gave an overview of some of the challenges that are presented by this methodology, using skin cancer and microcirculation imaging as examples, and discussed the palette of techniques available. The most popular of these are infrared reflectance confocal microscopy (RCM) and optical coherence tomography (OCT), which are complementary in terms of achievable depth penetration (RCM, 0.3 mm; OCT, 2mm) and resolution (RCM, approx1 mum; OCT, approx10 mum), respectively. The modification of these techniques to include additional read-outs such as fluorescence was discussed, along with the potential benefits of using two-photon excitation to enhance penetration of the excitiation source. Fluorescence imaging of skin and angiogenesis was the central theme of D. Becker's (Pittsburgh, PA, USA) presentation. She described the use of fluorescent dyes conjugated to antibodies against markers of interest to determine the effects of inhibiting the expression of basic fibroblast growth factor (FGF) and FGF receptor 1 in a murine model. A similar approach was also used for imaging gene expression in melanoma precursor lesions obtained from patients undergoing chemotherapy.

J. Fujimoto (Boston, MA, USA) showed that OCT has successfully been implemented in the clinic for several diseases (Fujimoto et al., 2000). This technique is essentially an optical analogue of ultrasound imaging, and it probes variations in tissue-refractive index so that high-resolution imaging of tissue microstructure is possible. He described the recent developments in ultra-broadband laser sources that have led to improvements in the resolution that is attainable using OCT, now down to 1–15 mum. OCT has been successfully used for the diagnosis of acute macular degeneration in human subjects and for skin imaging. Imaging of deeper structures necessitates the integration of fibre-optic catheters and endoscopes into the OCT imaging system. Fujimoto presented examples of intravascular OCT imaging, including clot and plaque formation in a rabbit aorta. He suggested that the current 'biopsy plus histology' gold standard for the imaging of neoplastic changes could potentially be replaced by an in situ optical biopsy using OCT.

Intravital microscopy allows high-resolution imaging of tumours and the surrounding vasculature. In turn, this enables imaging of the effects of cancer therapeutics at the microscopic level (Brown et al., 2001). E. Brown (Boston, MA, USA) introduced the use of second-harmonic generation (SHG) microscopy for intravital imaging. SHG relies on the conversion of incident light at a frequency of value omega, to photons at a frequency of 2omega (the second harmonic) by a nonlinear material. The local nonlinear properties of a material are dependent on its molecular structure and hyperpolarizability, thus the SHG signal is dependent on the intrinsic molecular properties of the specimen, and requires no additional dyes or reagents. Also, the non-resonant nature of this technique in combination with near-infrared excitation wavelengths render it potentially less biologically phototoxic. As the SHG signal is generated only at the focal point of the incident excitation light, this technique also provides inherent optical sectioning abilities. Brown has applied intravital microscopy to the imaging of collagen I, which is an extracellular-matrix component that is intrinsic to certain tumours and has a dominant role in drug transport. Its presence therefore often determines the efficacy of treatments for certain types of cancer. Brown was able to detect collagen-derived SHG signals by imaging a dorsal chamber murine-tumour model. The SHG signal was found to vary among tumour types and correlated with collagen content. This technique could be extended to the measurement of collagen density in tumours and to assess its impact on effective drug delivery.

Conclusions

Due to space constraints, we could not include all of the presentations given and we apologize to the participants whose work could not be mentioned. Hopefully, the concepts and presentations highlighted in this report provide a flavour of the meeting and a glimpse into the future of this field. Also, we hope that we have succeeded in conveying some of the excitement (and anticipation) that has been generated by the broad range of optical techniques that are now at the disposal of biologists and clinicians. However, the best illustration of this excitement is probably the great enthusiasm with which the presentations at this symposium were received. Hopefully, there will be an opportunity for Keystone Symposia to revisit this illuminating and rapidly expanding field in the not too distant future.

Acknowledgements

We are grateful to D. Becker, D. Farkas and S. Fraser for putting together a superb meeting. We thank A. North and T. Swayne for comments on the manuscript, and C. Contag, E. Jares-Erijman, A. Ewald, S. Fraser, T. Jovin, S. Mandl, R. Singer, and A. Toga for providing images used in the figures. A.-K.H. is a fellow of the America Heart Association.
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