Article

  • The EMBO Journal (2008) 27, 804 - 816
  • doi:10.1038/emboj.2008.18

Published online: 14 February 2008

Structural basis for a novel intrapeptidyl H-bond and reverse binding of c-Cbl-TKB domain substrates

Cherlyn Ng1,3, Rebecca A Jackson2,3, Jan P Buschdorf2, Qingxiang Sun1, Graeme R Guy2 and J Sivaraman1

  1. Department of Biological Sciences, National University of Singapore, Singapore
  2. Institute of Molecular and Cell Biology, Proteos, Singapore

Correspondence to:

J Sivaraman, Department of Biological Sciences, National University of Singapore, 14 Science Drive 4, Singapore 117543, Singapore. Tel.: +65 6516 1163; Fax: +65 6779 5671; E-mail: dbsjayar@nus.edu.sg

Graeme R Guy, Institute of Molecular and Cell Biology, Proteos, Singapore, Singapore. Tel.: +65 6586 9614; Fax: +65 6779 1117; E-mail: mcbgg@imcb.a-star.edu.sg

3These authors contributed equally to this work

Received 20 November 2007; Accepted 17 January 2008


The c-Cbl tyrosine kinase binding domain (Cbl-TKB), essentially an 'embedded' SH2 domain, has a critical role in targeting proteins for ubiquitination. To address how this domain can bind to disparate recognition mofits and to determine whether this results in variations in substrate-binding affinity, we compared crystal structures of the Cbl-TKB domain complexed with phosphorylated peptides of Sprouty2, Sprouty4, epidermal growth factor receptor, Syk, and c-Met receptors and validated the binding with point-mutational analyses using full-length proteins. An obligatory, intrapeptidyl H-bond between the phosphotyrosine and the conserved asparagine or adjacent arginine is essential for binding and orientates the peptide into a positively charged pocket on c-Cbl. Surprisingly, c-Met bound to Cbl in the reverse direction, which is unprecedented for SH2 domain binding. The necessity of this intrapeptidyl H-bond was confirmed with isothermal titration calorimetry experiments that also showed Sprouty2 to have the highest binding affinity to c-Cbl; this may enable the selective sequestration of c-Cbl from other target proteins.

  • Keywords:

    • c-Cbl,
    • EGFR,
    • Met,
    • reverse binding,
    • Sprouty,
    • TKB domain,
    • X-ray crystallography
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