Article

  • The EMBO Journal (2008) 27, 17 - 26
  • doi:10.1038/sj.emboj.7601951

Published online: 6 December 2007

Parallel topology of genetically fused EmrE homodimers

Sonia Steiner-Mordoch1,2, Misha Soskine1,2, Dalia Solomon1, Dvir Rotem1,3, Ayala Gold1, Michal Yechieli1, Yoav Adam1 and Shimon Schuldiner1

  1. Department of Biological Chemistry, Alexander Silberman Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem, Israel

Correspondence to:

Shimon Schuldiner, Department of Biological Chemistry, Alexander Silberman Institute of Life Sciences, The Hebrew University of Jerusalem, Silberman Bldg 3-345, Jerusalem, Givat Ram 91904, Israel. Tel.: +972 2 658 5992; Fax: +972 2 563 4625; E-mail: Shimon.Schuldiner@huji.ac.il

2These authors contributed equally to this work

3Present address: Department of Chemistry, Oxford University, Oxford, UK

Received 24 July 2007; Accepted 14 November 2007


EmrE is a small H+-coupled multidrug transporter in Escherichia coli. Claims have been made for an antiparallel topology of this homodimeric protein. However, our own biochemical studies performed with detergent-solubilized purified protein support a parallel topology of the protomers. We developed an alternative approach to constrain the relative topology of the protomers within the dimer so that their activity can be assayed also in vivo before biochemical handling. Tandem EmrE was built with two identical monomers genetically fused tail to head (C-terminus of the first to N-terminus of the second monomer) with hydrophilic linkers of varying length. All the constructs conferred resistance to ethidium by actively removing it from the cytoplasm. The purified proteins bound substrate and transported methyl viologen into proteoliposomes by a proton-dependent mechanism. A tandem where one of the essential glutamates was replaced with glutamine transported only monovalent substrates and displayed a modified stoichiometry. The results support a parallel topology of the protomers in the functional dimer. The implications regarding insertion and evolution of membrane proteins are discussed.

  • Keywords:

    • ion-coupled transport,
    • membrane protein evolution,
    • membrane protein structure,
    • membrane protein topology,
    • multidrug transporters
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