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To verify the recruitment of C/EBP and Foxo1 to the promoter in vivo, we utilized the chromatin immunoprecipitation (ChIP) assay. Cell lysates prepared from neonate liver were used for ChIP assays to test if endogenous proteins were recruited to the PEPCK promoter in vivo. We immunoprecipitated the cell lysate with antibodies against Foxo1, C/EBP and acetylated histone H3, and immunoprecipitates were subjected to PCR using primers to amplify the DNA fragment (-210 to +67 nucleotide) of the PEPCK promoter. These antibodies immunoprecipitated the promoter fragment from neonatal liver (Figure 6B), but not from E14.5 liver (data not shown), indicating that both Foxo1 and C/EBP were recruited to the promoter.
To address whether the recruitment of Foxo1 to the promoter depends on the presence of C/EBP , we performed ChIP assays using C/EBP -deficient liver cells. Neither C/EBP nor Foxo1 was recruited to the PEPCK promoter in C/EBP -deficient cells (Figure 6B). To exclude effects of C/EBP on hepatocyte development, we knocked down C/EBP expression in wild-type cells by shRNA and examined occupancy of Foxo1 on the PEPCK promoter (Figure 6C). The results were consistent with the C/EBP knockout cells. These results indicate that C/EBP is necessary for the recruitment of Foxo1 to the PEPCK promoter.
Discussion As the C/EBP expression alone cannot account for the expression of metabolic genes in the perinatal liver and in primary cultured hepatocytes, an additional factor(s) is necessary for the dramatic increase of metabolic genes in the perinatal liver (Figure 1). We show that Foxo1 expression in the liver was abruptly upregulated before birth, and that Foxo1 augmented C/EBP -dependent transcription through direct interaction. As the expression of gluconeogenic genes is regulated cooperatively by multiple transcription factors, including C/EBPs, CREB, HNFs, GR, PPARs and AP-1, it is rather difficult to dissect their complex interactions in vivo (Desvergne et al, 2006). Nevertheless we provide several lines of evidence that Foxo1 participates in the C/EBP -dependent transcription of gluconeogenic genes in the perinatal liver, and PGC-1 also participates in this coregulation. Immunoprecipitation demonstrated the direct interaction between C/EBP and Foxo1. ABCD assays revealed that Foxo1 binds to the RE only when it is coexpressed with C/EBP , and ChIP assays also showed that Foxo1 is recruited to the PEPCK promoter only in the presence of C/EBP . Although somewhat controversial results were reported on the function of C/EBP for glucose metabolism in adult liver (Lee et al, 1997; Inoue et al, 2004; Qiao et al, 2006), it is considered that C/EBP also plays an important role for glucose metabolism in adult liver. The C/EBP –Foxo1 complex may exhibit different functions, depending on cellular context, for example, fetal versus adult liver. Although both C/EBP and Foxo1 were shown to have a role in growth arrest, it is unlikely that they cooperate in this case, because growth arrest by C/EBP does not require the Foxo1 interaction domain.
As the DNA binding domain of Foxo1 was required for the interaction with C/EBP (Figure 4C and D), we examined acetylation mutants of Foxo1 that modulate DNA binding (Matsuzaki et al, 2005). Mutants considered to mimic an acetylated and non-acetylated form of Foxo1, bound to C/EBP , there was no significant difference in C/EBP -dependent transcriptional activity between these mutants compared with wild type Foxo1 (Figures 3E, F and 4F). However, as these results were obtained by overexpression experiments, it remains possible that in the physiological condition, acetylation of Foxo1 may affect the cooperation with C/EBP . Because the third helix of Foxo1 was required for C/EBP binding and is conserved among the Forkhead family members (Lai et al, 1993), the family members other than Foxo1 may also interact with C/EBP . In fact, we found that Foxo3 was also expressed in E18.5 liver and interacted with C/EBP (data not shown). The C-terminal region of C/EBP was shown to interact with Foxo1, and this region is relatively conserved among the C/EBP family members (Figure 5). C/EBP also bound to Foxo1 (data not shown), suggesting that C/EBP may also function together with Foxo1 to regulate gene expression. In fact, C/EBP was reported to play a role for glucose metabolism in the perinatal liver; although some of C/EBP KO mice were viable, all C/EBP KO mice in the context of C/EBP +/- background died immediately after birth, because of impaired glucose homeostasis, similar to C/EBP KO mice (Begay et al, 2004).
Among various liver enzymes, those involved in glucose metabolism are subject to insulin regulation in adult liver. Insulin regulates the blood glucose level by repressing gluconeogenesis and stimulating glycolysis (Saltiel and Kahn, 2001). While the plasma insulin level is high and gluconeogenic genes are suppressed in fetus, it rapidly decreases and gluconeogenic genes are upregulated after birth (Blazquez et al, 1970; Girard et al, 1992). Foxo1 is phosphorylated by insulin through the PI3 kinase/Akt pathway, and the phosphorylated Foxo1 is excluded from the nucleus, resulting in the attenuation of its transcription activity (Brunet et al, 1999; Kops et al, 1999). Consistently, we show that insulin suppressed expression of PEPCK and G6Pase in primary culture of fetal liver cells and that insulin also inhibited C/EBP -dependent transcription enhanced by Foxo1. In contrast to PEPCK and G6Pase that are sharply upregulated at the perinatal stage and subject to insulin regulation, expression of the other C/EBP target genes, Gys2 and glucokinase (Gck), which are involved in glycogen synthesis and glycolysis, were not altered by insulin in the fetal liver. Interestingly, Gys2 is constantly expressed in the liver from E14 to adult, and Gck expression in E14 and neonate liver as well as fetal liver cells induced to differentiate in vitro was very low, that is, undetectable by Northern blot (data not shown). Thus, while there are several types of gene regulation in C/EBP target genes, at least two key enzymes for gluconeogenesis are subject to insulin regulation via Foxo1 and C/EBP .
Although both insulin and C/EBP have been known to regulate gluconeogenesis, the link between insulin and C/EBP has not been understood. Our results provide evidence for the first time that Foxo1 regulates C/EBP function and links the insulin signaling to C/EBP in the perinatal liver.
Materials and methods Plasmids and antibodies
C/EBP cDNA was cloned by PCR into pcDNA3 vector (Invitrogen), based on the reported sequence. C/EBP response element ( RE; CGCGTATTGGCCAATATTGG CCAATCTCGA) and PEPCK promoter (-450 -1) were inserted into pGL3 vector (Promega). The 3xIRS Foxo1 response element was described previously (Daitoku et al, 2004). Mouse Foxo1 mutants, 3A Foxo1 and WH Foxo1 were described previously (Daitoku et al, 2004), and a series of mutants were generated on the basis of these constructs. Antibodies used in this study are the following: anti-C/EBP (14AA, SantaCruz), anti-Foxo1 (H-128, N-18, SantaCruz, and C3; Daitoku et al, 2003), anti-phospho-Foxo1 (#9461, Cell Signaling Technology), anti-HA tag (12CA5, Roche), anti-Flag tag (SIGMA), anti-acetylated histone H3 (Upstate), anti-actin (I-19, SantaCruz), anti-tubulin (T5168, SIGMA) and anti-TBP (N-12, SantaCruz). shRNA for Foxo1 and C/EBP were of Expression Arrest Mouse retroviral shRNAmir (Open Biosystems).
Cell culture, transfection, and luciferase assays
Fetal liver cells were cultured as reported previously (Kamiya et al, 1999). Briefly, E14.5 fetal liver cells were dissected in the liver perfusion medium (Invitrogen), and a single cell suspension was obtained by collagenase digestion and seeded on the gelatin-coated dishes. Cells were maintained in the presence of OSM, Dex and insulin throughout the culture, unless otherwise indicated. 293T cells were maintained in DMEM with 10%FCS.
Transfection was performed by using the Lipofectamine and plus reagent, according to the manufacturer's instruction (Invitrogen). Luciferase assay was performed according to the manufacturer's instruction (Promega). Each experiment was performed in triplicate.
All experiments using cultured fetal liver cells were performed with at least three different cell preparations.
C/EBP KO mice (Wang et al, 1995) were generously provided by Dr Darlington (Baylor College of Medicine). Pups obtained by crossing of heterozygotes were collected, and at least three different pups were used for analysis. Genotypes were determined by PCR using following primers: for wild-type allele, 5'-AGACCAGAAAGCTGAGTTGTGAGTT-3' and 5'-CAAAACCAAAACAAAACAAAAGACC-3'; for mutant allele, 5'-ACGACGGGCGTTCCTTGCGCAGCTGTG-3' and 5'-TCAGAAGAACTCGTCAAGAAGGCGATA-3.
qPCR
Total RNA was prepared from livers by Trizol (Invitrogen), and was further purified using the High Pure RNA isolation kit (Roche). Reverse transcription was performed by using the QuantiTect Reverse Transcription kit (Qiagen) and qPCR analysis was performed by using TaqMan Gene Expression Assays (Applied Biosystems), using GeneAmp 5700 Sequence Detection System (Applied Biosystems). Each experiment was performed in triplicate, and with at least two different RNA preparations.
Immunohistochemistry
Neonate liver was embedded in 4% carboxymethyl cellulose gel and sectioned. Sections were fixed with 4% paraformaldehyde and stained with anti-Foxo1 antibody. Alexa Fluor 488-conjugated anti-rabbit IgG antibody was used as the secondary antibody. Nuclei were stained with propidium iodide.
Nuclear and cytosolic extraction
Nuclear and cytosolic extracts were prepared by the standard procedure (Timchenko et al, 1999).
Immunoprecipitation and Western blotting
Neonatal liver cells or 293T cells transfected with expression vectors for a series of Flag-tagged Foxo1 mutants with HA-tagged C/EBP were lysed with lysis buffer (10 mM Hepes–KOH (pH7.9), 100 mM KCl, 0.1% NP-40, 0.5 mM EDTA, protease inhibitors (1 mM phenylmethylsulfonyl fluoride, 5 g/ml aprotinin, and 5 g/ml leupeptin)) and incubated with anti-C/EBP antibody or anti-Flag-tag antibody-linked agarose beads. C/EBP antibody was immunoprecipitated with protein G agarose beads. The immunoprecipitates were washed with lysis buffer, and subjected to SDS–PAGE, and immunoblotted using antibodies against Foxo1 or HA-tag.
GST pull-down assay
GST-Foxo1 fusion protein was expressed in BL21(DE3) strain of E. coli by using the pGEX-5X-1 vector. HA-tagged C/EBP protein was prepared using the TnT reticulocyte lysate system (Promega), according to the manufacturer's instruction. GST fusion protein was purified with glutathione sepharose 4B (GE healthcare). Purified glutathione sepharose -bound-GST-Foxo1 was mixed with in vitro translated HA-C/EBP protein in lysis buffer. The glutathione sepharose beads were washed three times with lysis buffer, and subjected to SDS–PAGE, and immunoblotted using antibodies against HA tag.
ABCD assay
The DNA–avidin beads complex was prepared by adding the annealed biotinylated DNA to 30 l of the streptavidin-conjugated magnetic beads (iMag Streptavidin Particles Plus-DM, BD), and mixed by a mixer overnight and washed with TE to eliminate unbound DNA. To prepare cell lysates, cultured cells were lysed with lysis buffer and the insoluble materials were removed by centrifugation. The supernatant was incubated with DNA–avidin beads and 50 g of poly(dI-dC). After 20–60 min at 4°C, beads were collected by magnet and washed with lysis buffer. After washing, SDS sample buffer was added and the samples were subjected to electrophoresis followed by Western blot. Biotinylated DNA used were the following: RE, 5'-TATTGGCCAATA-3'; control, 5'-ATATCGCGATAT-3'.
ChIP assay
ChIP assay was performed with the ChIP assay kit (Upstate), according to the protocols provided by the manufacturer. Briefly, whole livers were dissected and homogenized, and cells were fixed with 1% formaldehyde for 10 min and sonicated in the SDS-lysis buffer (50 mM Tris–HCl (pH8.1), 10 mM EDTA, 1% SDS). Fragmented soluble chromatin was immunoprecipitated with antibodies. After washing, the precipitates were reverse crosslinked for DNA isolation and PCR analysis. PCR was performed with the following primers: PEPCK sense (-210), 5'-GAGGCCTCCCAACATTCAT-3', antisense (+67), 5'-CGCTGAGCGCCTTGCCGGA-3'; -actin sense (-75), 5'-GTTCCGAAAGTTGCCTTTTATG-3', antisense (+252), 5'-ATGTGGCTGCAAAGAGTCTACA-3'.
Supplementary data
Supplementary data are available at The EMBO Journal Online (http://www.embojournal.org).
Acknowledgements
We thank Drs A Kamiya, T Itoh and T Sato for helpful discussion and critical reading of the manuscript, Drs E Saijou and T Naiki for plasmid construction and also thank Dr H Daitoku for Foxo1 expression vectors and antibody, and Dr M Shiina for mutant C/EBP expression vectors and proteins. We are grateful to Drs G Darlington and M Takiguchi for providing us with C/EBP mutant mice and Dr Y Ohmori for his kind support in completing this work. This work was supported in part by Grants-in-Aid for Scientific Research from the Ministry of Education, Culture, Sports, Science and Technology of Japan, and from the CREST program of Japan Science and Technology Agency.
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