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In summary, our data suggest that channel subunits whose TCC domains do not interact in vitro are unable to form functional heteromultimers at a detectable level in vivo. The introduction of compatible TCC domains has a permissive effect on the heteromeric interaction, thus highlighting the relevance of the TCC domain in determining the selectivity of subunit interaction.
Discussion Our experiments provide evidence supporting the hypothesis that coiled-coil tetramerization can drive subunit interactions in many different ion channels, and also determines the specificity of interaction.
TCC domains form very stable tetramers. Structural differences between coiled coils that form either tetramers or dimers are to be expected. As the number of subunits increases, the hydrophobic core also needs to be larger to accommodate a greater number of hydrophobic side chains, and heptad positions e and g will become closer, with interactions between them becoming more important. Assuming a 100% accessibility of all side chains in a monomeric -helix, 87% of the side chains in positions a and d, as well as 26–27% of the side chains in positions e and g, would be buried in a dimer. For a tetramer, the respective values increase for positions a (92%) and d (99%) as well as for positions e (72%) and g (66%), as calculated for an artificial structure similar to the TCCs (Harbury et al., 1993). When we compared the heptad repeat of TCC sequences with that of dimeric coiled coils, which have been extensively characterized (O'Shea et al., 1989; Lupas et al., 1991), significant differences in the amino acid distribution were evident. There was no significant change in the frequency of occurrence of hydrophobic residues for the helical positions b, c and f, while in positions a and d the frequency of large hydrophobic residues increased from 60 and 50% respectively to 80% for both positions (p < 0.001). Conversely, alanine, the strongest helix stabilizing amino acid (O'Neil and DeGrado, 1990), is rarely found at TCC positions a (2%) and d (1%), whereas dimers quite frequently contain it (10%, p < 0.05; 22%, p < 0.001). Hence, the amino acid distribution in the TCCs is also compatible with tetramerization rather than dimerization. In contrast with dimerizing coiled coils, which are usually antiparallel, we assume a parallel orientation of the helices in TCC domains because they are derived from integral membrane proteins and therefore all subunits should be equally oriented. The putative e–g inter-helical interactions (i.e. hydrophobic–hydrophobic and positively charged– negatively charged residue pairs at opposing positions) also favour such an orientation.
The data presented here suggest that the ability of a particular channel subunit to form heteromultimers with those encoded by different genes is determined by compatibility of the TCC domains. In channels from the EAG superfamily, disruption of the TCC domain leads to non-functional channels, and introduction of a heterologous domain (Eag1 TCC) rescues the function, indicating that the presence of a TCC is enough to drive the formation of functional channels. Interactions between channels of the EAG superfamily and channels of the Kv family (the Shaker type, not containing a predicted TCC domain) have been under debate for some time (Zhong and Wu, 1991, 1993; Brüggemann et al., 1993; Chen et al., 1996, 2000; Tang et al., 1998). Despite initial electrophysiological evidence suggesting co-assembly of both types of subunits, biochemical data have not supported a physical interaction. Our results reinforce the biochemical evidence, since heteromultimerization between 'carboxy-terminal' (like Eag) and 'amino-terminal' type channels (like Shaker) would expose hydrophobic areas in the TCC domains to the aqueous environment, and this would be energetically very unfavourable. The absence of a TCC dramatically impairs channel functional expression, but does not completely abolish it (see Kupershmidt et al., 2002; Figure 6). Under favourable conditions Erg1 channels lacking such a domain can give rise to small currents. Additionally, a HERG splice variant lacking the C-terminus (HERGUSO), although not functional when expressed alone, is capable of modifying the function of wild-type HERG when co-expressed, indicating the formation of heteromultimers (Kupershmidt et al., 1998). However, the presence of a TCC domain is the dominating factor driving the subunit assembly.
The recently described ER retention signal RGR at the C-terminal end of Erg1 also plays an important role in the correct maturation of the channel proteins. Thus, a truncated Erg1 can give rise to significant currents if the RGR sequence is deleted, although the size of the currents does not reach the wild-type levels. Additionally, when a TCC domain is added to the channel and the RGR sequence is mutated to LGL, the two effects combine to give rise to currents several-fold larger than those of wild type. It is interesting to note that wild-type Erg1 appears to be retained to a large extent in the ER of CHO cells, and also renders currents much smaller than our chimera Erg1-Eag1TCC/LGL. This suggests the intriguing possibility that, similarly to what has been described for other channels (Zerangue et al., 1999), Erg1 is not efficiently transported in heterologous cells owing to the lack of an accessory subunit that masks the RGR sequence in the native system.
Several TCC-bearing proteins are implicated in the pathogenesis of human diseases such as cardiac arrhythmia, epilepsy, deafness, visual dysfunction and renal disorders. If the TCC domain is essential for proper channel function, as our experiments indicate, any mutation altering its structure would result in significantly altered channel function and therefore produce symptoms. Hence, the TCC domain would be a 'hotspot' for mutations in patients suffering from channelopathies. We have identified at least 38 previously described mutations in seven different genes that affect the TCC domain of the respective products, i.e. mutations in (or close to) the TCC domains are much more frequent than a random distribution would predict (data available on request).
It is important to note that, whenever it has been tested, none of the mutant channels that completely lacked the TCC was functionally active. This is in good agreement with a model where the TCC domain mediates the subunit assembly of these channels. The frequent occurrence of mutations that affect the TCC domain, and consequently lead to channelopathies, highlights the crucial role of this domain for the formation of normally functional channels.
Materials and methods Sequence analysis
The program Coils Version 2.2 (Lupas et al., 1991; http://www.ch.embnet.org) was used for the prediction of coiled-coil domains. The significance of changes in the amino acid distribution within the heptad repeats of dimeric and tetrameric coiled coils was calculated using the 2 test. Data for the amino acid distribution in the heptad repeats of coiled coils in dimeric proteins of the MTK type (Cohen and Parry, 1990) and the general frequency of amino acids in proteins published in GenBank were taken from Lupas et al. (1991). The LZ-type coiled coils of 217 transcription factors published in GenBank were aligned for maximal hydrophobicity at heptad positions a and d prior to analysis. The TCC domains used in the analysis are shown in Figure 1: Eag1, 2 (DDBJ/EMBL/GenBank accession Nos AF078741, EST-Klon U69185), Erg1-3 (CAB09536, AAB94742, AAB94741), Elk1-3 (CAA07587, CAA07586, AAC61520), KCNQ1-5 (AAC51776, CAA75348, AAB97314, AAD14681, AAF73446), CNGAA1-3 (P29973, Q00195, AAC17440), SK1-3 (AAB82740, AAB09563, AAB81653), KCa4 (AAC51913), PKD1, 2, L, REJ (AAB59488, AAC16004, AAD41638, AAD18021), PCL2 (AAF65622), TRPC1, 3–7 (CAA61447, AAC51653, AAD51736, AAF00002, AAC63289, BAA95563), hMTR1 (AAF26288), mChaK (AAF73131), hMLSN1 (AAC80000) and TRP2 (AAD31453). Additionally, homologues of the proteins from different species available in GenBank and tetrameric coiled coils of BCR/abl (26–65, accession No. AAA35594) and viral proteins (Leclerc et al., 1998) were included in the analysis.
Chromatography and MALLS
Peptides were synthesized and purified, and were N-terminal acetylated and C-terminal amidated to avoid the introduction of additional charges (sequences are listed in Table I). Peptide sequences were checked by MALDI-TOF mass spectrometry: 1 mg/ml corresponded to 0.13 mM (TCCEag1), 0.30 mM (TCC Eag1L20Y), 0.21 mM (TCCEag2), 0.26 mM (TCCEag2L13Y), 0.16 mM (TCCErg1), 0.33 mM (TCCErg1L20Y) and 0.4 mM (TCCErgIns) as determined by amino acid analysis. Molecular weight determination of peptide complexes in solution was performed on a size exclusion chromatography (SEC) column (HR-10/30 Superdex 75 column, Pharmacia Biotech). Either PBS (native conditions) or PBS plus 6 M guanidinium hydrochloride (denaturing conditions) was used as running buffer. The same conditions were used to calibrate the column at either condition with ovalbumin (43 kDa), chymotrypsinogen A (19.2 kDa), ribonuclease A (13.7 kDa) and aprotinin (6.5 kDa). Under denaturing conditions, protein kinase A inhibitor (2.2 kDa) and vitamin B12 (1.4 kDa) were added for calibration. Alternatively, molecular weight determination was carried out by monitoring the light-scattering signal of the SEC eluent at 18 different angles and the differential refractive index, both at 632.8 nm (DAWN DSP laser photometer and Optilab DSP interferometric refractometer, Wyatt Technology, Santa Barbara, CA), as well as the optical density at 280 nm. Data analysis was carried out using the program Astra (Wyatt) with a constant dn/dc value of 0.189.
Circular dichroism
Far UV CD spectra from 190 to 260 nm (in steps of 1 nm) were obtained by averaging five to ten scans on a CD spectrometer (Jasco JA 720 and PTC-315). The recordings of 1 mg/ml peptide in either PBS or 3.5 M guanidinium hydrochloride in PBS were performed using Suprasil cuvettes (Hellma) with a path length of 0.2 cm. The helical content of the peptides was evaluated by deconvolution of the spectra using CDNN (Bohm et al., 1992; http://bioinf1.biochemtech.uni-halle.de). The thermal stability of the peptides was measured by monitoring the ellipticity at 222 nm ( 222), denaturing from 0 to 90°C and subsequently renaturing from 90 to 0°C (2°C/min). Melting points (Tm) were calculated from the average of the maximal slope of the recorded denaturing and renaturing temperature-dependent  222.
Surface plasmon resonance
Experiments were performed on a BIAcore 2000 system (Biacore). For covalent immobilization the TCC peptides (ligand) were diluted to 1.3–3.2 M in 10 mM acetate buffer pH 4.0 or 4.5, and coupled via primary amines. Owing to the lack of lysine in the TCC ERG1 peptide, an N-terminal unmodified peptide was used for immobilization. Each analyte–ligand pair was first examined for interaction at an analyte concentration of 3 M. Interacting analyte–ligand pairs (>5 RU after 480 s, 3 M) were subsequently analysed at concentrations from 10 nM to 3 M. Traces of interacting peptides are averages of three injections. Data from a reference sensor surface without immobilized peptide were subtracted before analysis.
Molecular biology
Site-directed mutagenesis was performed using the QuikChange XL Site-Directed Mutagenesis kit (Stratagene, Amsterdam, The Netherlands) following the protocol recommended by the manufacturer. All mutants were fully sequenced to avoid the risk of additional mutations introduced in PCR. To generate the Erg1:Eag1TCC chimera, an AscI site was introduced in both sequences (position 3002 in Erg1 and position 2680 in Eag1) and a fragment AscI–BamHI was transferred from Eag1 into the ErgIns backbone.
The EGFP:Erg1 and EGFP:ErgIns were generated inserting a fragment EcoRI–HindIII in the pEGFPC3 vector from Invitrogen (Karlsruhe, Germany). Transient transfection of CHO K1 cells was performed using DAC30 (Eurogentec, Seraing, Belgium) in a ration of 2.5:1 with DNA, and the cells were observed and photographed by conventional epifluorescence and confocal microscopy both in vivo and after fixation with 4% p-formaldehyde.
For electrophysiological experiments, cRNAs synthesized using standard protocols (Krieg and Melton, 1987), were injected (or co-injected) into oocytes from Xenopus laevis as described previously (Stühmer, 1992).
Electrophysiology
Currents were recorded 1–7 days after cRNA injection using a Turbo TEC -10CD amplifier (npi Electronics, Tamm, Germany). Intracellular electrodes had resistances of 0.6–1 M when filled with 2 M KCl. Recordings were obtained at room temperature in an external solution containing 85 mM NaCl, 30 mM KCl, 1.8 mM CaCl2, 2.0 mM MgCl2 and 10 mM HEPES–NaOH pH 7.2. On-line leak subtraction was systematically performed using a P/n protocol. Data were acquired and analysed using Pulse-PulseFit (HEKA Electronics, Lambrecht, Germany) and IGOR Pro (WaveMetrics, Inc. Lake Oswego, OR) software packages.
Acknowledgements
We thank Dr R.García for help with electrophysiological experiments and for helpful discussions, Drs O.Brauns, K.Eckart and C.Morys-Wortmann (Max Planck Institute for Experimental Medicine) for peptide synthesis, Drs V.Subramaniam and D.Fasshauer (Max Planck Institute for Biophysical Chemistry) for help with the CD spectroscopy, Professor G.Mieskes and Dr S.Pabst (Max Planck Institute for Biophysical Chemistry) for help with the MALLS, A.Suckow for helpful discussions, and Drs S.Smith and H.Knötgen for critically reading the manuscript. F.M. wishes to thank Dr E.Posada, Dr M.Camacho, Ms I.Rugeles and Dr E.Rey (CIF) and COLCIENCIAS for support. F.M. was supported by Centro Internacional de Física (CIF), Colombia.
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