Introduction

Organogenesis is a developmentally coordinated process such that the adjacent tissues and structures influence one another’s morphogenesis. For instance, bladder exstrophy (OMIM: %600057) is associated not only with defects in the bladder wall but also in the external genitalia and the pelvic girdle.1, 2, 3, 4 The ventral body wall defect called omphalocele is also associated with cardiac and anorectal malformations in more than 50% of cases.5, 6 Although methodologies for genetic analysis have been improved recently, the pathogenic mechanisms of such syndromic malformations are unclear.7, 8, 9

The genital tubercle (GT) is the anlage of the external genitalia in both males and females. The GT is composed of a urethral plate/tube derived from the cloacal membrane together with the mesenchyme and the outer ectoderm.10 Congenital abnormalities frequently result from abnormal GT formation and its subsequent development. A common defect is hypospadias, in which the urethra opens aberrantly into the ventral GT.11 Recent studies have identified the causative genes and signaling pathways related to hypospadias-like pathogenesis, including Hedgehog (Hh) and Wnt.12, 13, 14, 15, 16, 17, 18, 19 On the other hand, epispadias is a congenital abnormality reflecting aberrant development of the dorsal part of the GT. Patients with epispadias often present with other abnormalities such as bladder exstrophy.2, 3 The incidence of dorsal GT abnormalities including epispadias (2.4 in 100 000) is rare relative to hypospadias (1 per 300 live births).2, 4 Hence, the pathogenic mechanisms underlying dorsal GT hypoplasia are poorly understood and require investigation.

The Aristaless-like homeobox 4 (Alx4) is an essential gene for skull and appendage development in humans and mouse.20, 21, 22, 23 Several heterozygous and homozygous mutations in the human ALX4 gene have been identified and the human phenotypes vary with the type of mutations.22, 23, 24 Common defects observed with ALX4 mutations in both heterozygotes and homozygotes are parietal foramina, which are oval defects of the parietal bones. Affected individuals also display alopecia, coronal craniosynostosis, hypertelorism, severely depressed nasal bridge and ridge, bifid nasal tip, hypogonadism/cryptorchidism, callosal body agenesis and/or mental retardation.25 Several mouse Alx4 mutants have also been reported.26 Representative phenotypes include preaxial polydactyly, hemimelia of the tibia, craniofacial abnormalities (reduction of the parietal and frontal bones), eyelid abnormalities, ventral body wall defects, cryptorchidism and alopecia.20, 21, 26

One of the Alx4 mouse mutants, Alx4Lst (Strong's luxoid: LstJ), is a naturally occurring 16-bp deletion in the homeobox-encoding domain.26, 27 Such deletion disrupts the DNA recognition helix and results in a frame-shift of the downstream protein-coding sequence.26 We previously utilized combinatorial mutants of Alx4Lst, Gli3Xt and Shh to show that omphalocele pathogenesis likely relates to disruption of the ventral body wall and pelvic girdle formation.28 Here we investigate the correlation of these phenotypes with the broad spectrum of lower body abnormalities, including GT morphogenesis. We analyzed the function of Alx4 during GT formation with a series of genetically modified mouse models and tissue labeling experiments. We found that the Alx4Lst compound mutants display dorsal GT hypoplasia and some of the above defects could be remedied by modulating Hh signaling. In addition, tissue labeling and extirpation experiments revealed that mesenchymal cells located in the proximal umbilical cord normally migrate to the dorsal GT. These results suggest an essential interaction between Alx4 function and Hh signaling for coordinated development of lower ventral body structures.

Materials and methods

Mice

The mutant mice used herein were Shh, Gli3Xt (XtJ), Alx4Lst (LstJ), CAGGS-CreERTM and Rosa26-SmoM2.26, 27, 29, 30, 31, 32 The genotypes of each strain were determined as reported previously. To obtain Alx4Lst; Gli3Xt; Shh combinatorial mutants, single, double or triple heterozygous male and female mice were crossed. Noon of the day when the vaginal plug was identified was considered as embryonic day 0.5 (E0.5). All experimental procedures and protocols were approved by the Committees on Animal Research at Wakayama Medical University and at Kumamoto University.

Histological analyses

Mouse embryos were fixed overnight in 4% paraformaldehyde (Sigma, St Louis, MO, USA) with phosphate-buffered saline, dehydrated through methanol, embedded in paraffin, and 8 μm serial sections were prepared. Hematoxylin and eosin staining was performed using standard procedures.14, 17 Immunohistochemical analysis was performed by standard procedures using anti-fibronectin antibody (1:500, Sigma). Signal amplification was performed using VECTASTAIN ABC Rabbit IgG Kit (Vector Laboratories, Burlingame, CA, USA) and the immunocomplexes were detected with DAB staining.

Statistical analysis

For the statistical analyses of the length between the umbilical cord and the GT, the length was measured with a slide gauge. Data were analyzed using Student’s t-test (two tailed). P<0.001 was considered to be statistically significant. Values are given as means±SD.

In situ hybridization

Whole-mount and section in situ hybridizations for gene expression analyses were performed as previously described.28 The antisense riboprobe templates have been described previously: Alx4 (kindly provided by Dr Toshihiko Shiroishi and Dr Frits Meijlink), transcription factor AP-2 alpha (Ap2α) (kindly provided by Dr Chi-chung Hui), Mab-21 (male abnormal 21: C. elegans) like 2 (Mab21l2),33 paired-like homeodomain transcription factor 1 (Pitx1) (kindly provided by Dr YiPing Chen), fibroblast growth factor 8 (Fgf8) (kindly provided by Dr Brigid LM Hogan), Sonic hedgehog (Shh) (kindly provided by Dr Chisa Shukunami) and Patched homolog 1 (Ptc1) (kindly provided by Dr Jun Motoyama).

Hh signaling gain-of-function analysis

Rosa26-SmoM2 (R26-SmoM2) homozygous female mice were crossed with male mice bearing the tamoxifen-inducible CAGGS-CreERTM transgene.31, 32, 34 Pregnant R26-SmoM2 females were treated with tamoxifen (2 mg per 40 g maternal body weight) orally using a gavage needle. No overt teratological effects of tamoxifen were observed in the control embryos under these conditions.13, 14, 15

DiI tissue labeling

The harvested embryos at E12.0 were embedded in saline with 3% agarose and sectioned sagittally using a vibratome. The DiI solution (0.01% DiI dissolved in dimethylsulfoxide) was injected into the proximal umbilical mesenchyme with a glass needle.

Explanted tissue cultures

DiI-labeled and dissected tissue samples were cultured for 36 or 48 h on ISOPORE membrane filters (Millipore, Bedford, MA, USA) in BGJb medium (Gibco BRL, Carlsbad, CA, USA) with 10 mM HEPES (pH 7.4) and 0.1 mg/ml L-ascorbic acid at 37 °C in air and 5% CO2.

Results

Alx4Lst/Lst mutants have hypoplasia of the dorsal GT

To gain insight into the role of Alx4 during body wall and GT formation, we examined the expression of Alx4 in the body wall and urogenital organs including GT in E10.5–13.5 wild-type embryos. Alx4 expression was observed around the proximal umbilical cord region at E10.5, before GT protrusion (Figures 1a and a′). At E11.5, Alx4 expression was prominent at the dorsal GT mesenchyme and the ventral body wall region (Figures 1b and b′). Expression in the proximal umbilical mesenchyme persisted until E12.5 and then gradually decreased later (Figures 1c′ and d′). Expression in the dorsal GT mesenchyme was observed at E12.5 and E13.5 (Figures 1c–d′).

Figure 1
figure 1

Expression of Alx4 and urogenital abnormalities of Alx4Lst/Lst mutants. Lateral view of Alx4 gene expression in whole-mount embryos at E10.5-E13.5 (ad). Alx4 expression in sagittal sections at E10.5-E13.5 (a′d′). Sagittal sections of urogenital organs of wild-type embryos (eg) and Alx4Lst/Lst mutants (jl) at E11.5, E12.5 and E18.5. Blue arrowheads indicate dorsal hypoplasia of the GT in Alx4Lst/Lst mutants. Sagittal sections (g, l), frontal view (h, m) and coronal sections (i, n) of the GT in E18.5 embryos. Red arrowheads in ln indicate hypoplastic dorsal GT in Alx4Lst/Lst mutants at E18.5. Blue arrow in l indicates hypoplastic ventral body wall of Alx4Lst/Lst mutants. b: bladder, c: cloaca, gt: genital tubercle, pp: prepuce, r: rectum, t: tail, u: urethra, uc: umbilical cord, urs: urorectal septum.

Urogenital phenotypes of Alx4Lst/Lst mutants were apparent by E11.5 (Figures 1e and j). The proximal umbilical mesenchyme and dorsal GT were significantly hypoplastic in Alx4Lst/Lst mutants at E11.5 and E12.5 (Figures 1j and k; blue arrowheads). This hypoplastic region corresponds to an Alx4 expression domain (Figures 1b′ and c′). In the late fetal stages, Alx4Lst/Lst mutants displayed pelvic girdle abnormalities and ventral body wall defects such as omphalocele, thin body wall and bladder wall hypoplasia (Figure 1l; blue arrow, data not shown). The dorsal GT was hypoplastic in the mutants at E18.5 (Figures 1l–n; red arrowheads). Alx4Lst/Lst mutants also had reduced size of glans penis and dorsal preputial tissues (Figures 1l–n). These results indicate that Alx4 function is essential for the normal formation of the caudal regions of the embryo.

Expression of several differentiation markers is altered in Alx4Lst/Lst mutants

Ap2α function is known to be essential for the formation of the ventral body wall and GT.35, 36, 37 The Ap2α-positive domain in the dorsal GT mesenchyme was smaller in Alx4Lst/Lst mutants compared with controls at E12.0 (Figures 2a and b; red arrowheads). Pitx1 gene is also expressed in the dorsal GT and proximal umbilical mesenchyme (Figure 2c). Such expression was retained at a high level in the dorsal GT and reduced in the proximal umbilical mesenchyme of Alx4Lst/Lst mutants (Figure 2d; red arrowheads). Expression of Mab21l2 gene and fibronectin protein (detected using immunohistochemistry) was markedly decreased throughout the GT in Alx4Lst/Lst mutants (Figures 2e–h; red arrowheads). Mab21l2 gene is expressed in the proximal umbilical mesenchyme and the dorsal GT at E12.5 (Figure 2e). Congenital body wall defects due to Mab21l2 mutation have been reported.33

Figure 2
figure 2

Expression of developmental markers in Alx4Lst/Lst mutants. Sagittal sections of the control and Alx4Lst/Lst mutants (a–l). Expression of Ap2a (a, b), Pitx1 (c, d) and Mab21l2 (e, f) genes was examined at E12.0 or E12.5. Immunohistochemistry to detect Fibronectin protein was performed in E12.5 sagittal sections (g, h). Red arrowheads indicate reduced expression of markers (b, d, f, h). Shh and Ptc1 expression in sagittal sections of the control and Alx4Lst/Lst mutants at E12.5 and E13.5 (i–l). Red arrows indicate augmented expression of Shh and Ptc1 in Alx4Lst/Lst mutants. The length between the umbilical cord and the dorsal GT was measured at E18.5 (m; inset). The significant difference in the length is indicated by an asterisk. Results are presented as means±SD. *P<0.001. gt: genital tubercle, hl: hindlimb, t: tail, uc: umbilical cord.

Previous reports have suggested that Alx4 gene function is related to Hh signaling, such as in the developing limb.20, 27, 28, 38, 39 Hence, we analyzed the expression of genes in the Hh pathway. The expression of Shh, one of the Hh ligands, was increased in the mutant cloacal epithelium (Figure 2j; red arrow). Ptc1 encodes the receptor for Hh ligands, and is a downstream target of Hh signaling;40, 41 its expression was also increased in the cloacal mesenchyme of the mutants (Figure 2l; red arrows).

Migration of proximal umbilical mesenchymal cells is impaired by Alx4 mutation

We observed a significant reduction in the distance between the umbilical cord and GT in Alx4Lst/Lst mutants at E18.5 (Figure 2m; wild-type versus Alx4Lst/Lst mutants: 1.75±0.42, n=10 versus 0.54±0.09, n=5; P<0.001). The distance between the fetal umbilical cord and the GT in early gestation has been suggested to be useful for early pre-natal diagnosis of congenital bladder exstrophy.42 As Fibronectin (Fn1) is an extracellular matrix component essential for cell adhesion and migration,43 and its expression was decreased in Alx4Lst/Lst mutants (Figure 2h; red arrowheads), the decreased distance between the umbilical cord and the GT prompted us to examine cell migration during the GT formation. We first performed tissue extirpation experiments to determine the significance of the cells in the proximal umbilical mesenchyme. The lower body tissues from E12.5 wild-type embryos with or without proximal umbilical mesenchyme were cultured in the BGJb medium (Figures 3a and c). After 48 h in culture, we examined the gross morphology of the control tissue versus that lacking umbilical cord (Figures 3b and d). We observed dorsal GT hypoplasia in explants cultured without proximal umbilical mesenchyme (Figure 3d; red arrow). We next performed tissue labeling experiments. Sagittally sliced tissues were labeled with DiI at E12.0 and incubated for 36 h. We observed the DiI-labeled cells distributed from the proximal umbilical mesenchyme to the dorsal part of GT (Figures 3e–f′). When we performed this labeling experiment with Alx4Lst/Lst mutants, we found that labeled cells in mutants migrated a shorter distance than those from control embryos (Figures 3g and h). These results suggest that cells in the proximal umbilical mesenchyme can migrate toward the GT mesenchyme and that this process is hampered by the Alx4 mutation.

Figure 3
figure 3

Tissue extirpation and cell migration of proximal umbilical mesenchyme. Surgical removal of the proximal part of umbilical cord at E12.5 (0 h) (a, c) resulted in hypoplasia of the dorsal GT (b, d; red arrow). DiI was injected into the embryonic tissue slices at E12.0 (0 h) (e, e′) and the slices were cultured for 36 h (f, f′). e′ and f′ are magnified views of e and f. Yellow arrow indicates the direction of migration of DiI-labeled cells. DiI-injected tissues of Alx4Lst/Lst mutants displayed reduced migration (g, h; white arrows). gt: genital tubercle, i: DiI, t: tail, uc: umbilical cord.

Genetic analysis of Alx4 and Hh signaling genes during GT formation

The current results suggest that Alx4 regulates urogenital organ development. We next analyzed candidate genes that may interact with Alx4 in the developing urogenital system. Previous reports suggested a genetic interaction between Alx4 and Hh signaling during early limb development.38, 39 We thus analyzed the genetic interaction between Alx4 and Hh signaling in the developing urogenital system. Fgf8 expression is a marker for the distal GT.15, 44 Conventional and conditional mutants for Shh gene are known to display GT hypoplasia and reduced expression of Fgf8, suggesting a possibility of distal GT hypoplasia.15, 17 Hence, we analyzed the expression of Fgf8 in the GT of Shh; Alx4Lst combinatorial mutants. In wild-type embryos, Fgf8 expression was detected in the distal GT (Supplementary Figures S1a and a′) and its expression was slightly augmented in the ventral GT of Alx4Lst/Lst mutants (Supplementary Figures S1b and b′). In contrast, Shh-/- mutants with GT agenesis did not display such expression (Supplementary Figures S1c and c′). We next examined Fgf8 expression in double mutants of Alx4 and Shh. Fgf8 expression was restored with slight protrusion of the GT in the mutants (Supplementary Figures S1d and d′; red arrows). These genetic analyses suggest that Alx4 can negatively regulate Hh signaling during GT formation.

Defective GT formation by aberrant Hh signaling

We then assessed the genetic interaction between Alx4 and Gli3, which mainly works as a negative regulator of Hh signaling, during GT formation. The introduction of Alx4Lst mutation into a Gli3Xt/Xt mutant background led to severe hypoplasia of the dorsal GT (Figures 4a–c′; black arrows). The Gli3Xt/Xt single mutants displayed slight hypoplasia of dorsal GT (data not shown). An additional introduction of Alx4Lst mutation to the Gli3Xt/Xt mutant background (Alx4Lst/+; Gli3Xt/Xt mutants) resulted in hypoplasia of the dorsal GT (Figure 4b; black arrow). Furthermore, double homozygous mutants (Alx4Lst/Lst; Gli3Xt/Xt) displayed more severe hypoplasia of both dorsal and ventral GT structures (Figure 4c; black arrows). These mutants also displayed hypoplastic body wall and a shortened distance between the umbilical cord and GT at E15.5 (Figures 4a′–c′; blue arrows). The expression of several marker genes such as Pitx1 and Mab21l2 was reduced in the upper cloacal mesenchyme in Alx4Lst/Lst; Gli3Xt/Xt mutants (Supplementary Figures S2a–d; red arrowheads).

Figure 4
figure 4

Genetic interaction between Alx4 and the Hedgehog signaling pathway during lower body formation. Lateral view and sagittal sections of wild-type, Alx4Lst/+; Gli3Xt/Xt and Alx4Lst/Lst; Gli3Xt/Xt embryos (a–c′). Lateral view of E18.5 GT with Alx4Lst mutations to the Gli3Xt/Xt genetic background (b, c). White arrow indicates normal GT (a). Black arrows indicate hypoplasia of the GT (b, c). Sagittal sections of wild-type, Alx4Lst/+; Gli3Xt/Xt and Alx4Lst/Lst; Gli3Xt/Xt embryos at E15.5 (a′c′). Blue arrows in panels b′ and d′ indicate hypoplasia of the ventral body wall. Frontal (d, g) and lateral (e, h) view of the GT in Alx4Lst/Lst; Gli3Xt/+and Alx4Lst/Lst; Gli3Xt/+; Shh+/- mutants. Alx4Lst/Lst; Gli3Xt/+ mutants display omphalocele and hypoplasia of the dorsal GT at E18.5 (d, e). These phenotypes are rescued in Alx4Lst/Lst; Gli3Xt/+; Shh+/- mutants (g, h). The sagittal sections of Alx4Lst/Lst; Gli3Xt/+ and Alx4Lst/Lst; Gli3Xt/+; Shh+/- mutants (f, i). Red arrows in panels e and f indicate hypoplasia of the dorsal GT. Blue arrowhead indicates hypoplastic ventral body wall in Alx4Lst/Lst; Gli3Xt/+ mutants. Lateral view of the GT of Hh gain-of-function mutants at E17.5 (j, k). Red arrowhead indicates hypoplasia of prepuce (k). b: bladder, bw: body wall, om: omphalocele, r: rectum.

Alx4Lst/Lst; Gli3Xt/+ mutants also displayed dorsal GT hypoplasia with ventral body wall abnormalities (Figures 4d–f; red arrows and blue arrowhead). Notably, decreasing Shh gene dosage partially rescued the morphology of the GT and body wall in Alx4Lst/Lst; Gli3Xt/+; Shh+/− mutants (Figures 4g–i). These data are all consistent with increased Shh signaling contributing to the complex phenotypes of Alx4 mutants.

We performed complementary experiments by using R26-SmoM2 allele, which possesses a constitutively active form of Smoothened (SmoM2) and a floxed stop cassette under the ubiquitous Rosa26 promoter.32, 34 By crossing R26-SmoM2 female mice and CAGGS-CreERTM transgenic male mice, an augmentation of Hh signaling is achieved in embryos after induction with tamoxifen.28 Tamoxifen treatment at E10.5 resulted in hypoplastic prepuce and uncovered the glans penis of the mutant GT at E17.5 (Figure 4k; red arrowhead). These results further support our hypothesis that excess Hh signaling could contribute to dorsal GT hypoplasia.

Discussion

Although the causative genes and mutations for inherited urogenital diseases have been identified,45 the functions of these genes in complex syndromes remain elusive. In particular, cellular mechanisms for tissue coordination during development of the urogenital organs are largely unknown, even though discoordination likely contributes to malformation of these structures. We previously reported several mutants with body wall defects associated with abdominal muscle and pelvic girdle abnormalities.28 Here we show that Alx4 mutants have reduced expression of Ap2α, Mab21l2 and Pitx1 genes, all of which are essential for body wall and/or pelvic girdle formation.33, 35, 46 In the case of Alx4Lst; Gli3Xt combinatorial mutants, the severities of GT phenotypes correlate to those of the body wall and pelvic girdle. From these observations, we suggest that the GT, the ventral body wall and the pelvic girdle develop coordinately. In addition, we also showed that cell migration is crucial for proper GT formation and is a likely cellular mechanism for coordinating the development of neighboring urogenital tissues. The current study suggests part of the pathogenic mechanisms for the broad-spectrum symptoms of some clinical patients.

Bladder exstrophy (OMIM: %600057) is a complex birth defect often associated with abnormalities of the external genitalia, rectus muscles and separation of the pubic bones.4 In addition, the umbilical cord is aberrantly located immediately above the bladder.1 Such features resemble the phenotypes of Alx4Lst/Lst mouse mutants. Additional phenotypes including craniofacial abnormalities have been reported in both human patients and Alx4Lst/Lst mouse mutants. However, human patients and mouse mutants often do not display identical phenotypes. Even in the case of human patients, there is significant variability in phenotypes resulting from different ALX4 mutations, such as nonsyndromic craniosynostosis by V7F and K211E mutations and syndromic craniofacial abnormalities including hypertelorism and cryptorchidism (undescended testis) with homozygous R265X mutation.25, 47 A case report with deletion of chromosome 11p12 extending to bands p11.2 and p13 (ALX4 is located on 11p11.2) had micropenis phenotype in addition to mild facial dysmorphism.48 Therefore, additional, as yet unidentified, mutations such as those seen in Alx4Lst (LstJ: a 16-bp deletion within the paired-type homeodomain, which causes a frame shift potentially producing a truncated protein at amino acid position 332) may cause urogenital syndromic malformations in humans. Additional genetic events, such as copy number variation or epigenetic modifications of ALX4, may also cause phenotypes in humans. Recently, genome-wide copy number variation studies have been performed for anorectal malformations and have identified some affected genes;49 however, the importance of these findings is not yet clear. On the other hand, ALX4 is frequently methylated in adenocarcinomas of the gastrointestinal tract.50 Hence, such human studies may become more essential for human ALX4 analyses.

The current analyses speculate that the loss of proximal umbilical cells and/or the disturbance of their migration toward the dorsal GT may contribute to syndromic malformations of structures derived from these tissues by utilizing Alx4 and Hh signaling (Figure 5). Such pathogenic mechanisms are likely applicable to other genes that affect cell migration and cell number in the proximal umbilical mesenchyme. In response to the growing number of infertility patients, assisted reproductive technology such as in vitro fertilization is becoming increasingly common. The exstrophy–epispadias complex is known to occur more frequently in children conceived by in vitro fertilization.51 We believe the current study will contribute to understanding the basis for such defects. Further clinical analyses of patients together with model animal studies will reveal the pathogenic mechanisms for human syndromic malformations.

Figure 5
figure 5

The summary schemes (a, b). (a) Brown signal indicates Fibronectin (Fn1) expression. The Alx4-positive region is marked in purple. Shh expression is marked in green. Cells in the proximal umbilical mesenchyme migrate toward the GT region in wild-type embryos (black arrow). The introduction of mutation in Alx4 gene affects Hh signaling with reduced Fibronectin (Fn1) expression, leading to defective cell migration (right panel). (b) The Alx4 mutation resulted in the reduced expression or expression area of several transcription factor genes such as Ap2α, Pitx1 and Mab21l2. On the other hand, the expression of Shh and Ptc1 was augmented. In one of the extracellular matrix and tissue components, fibronectin was also downregulated. As a result, it is suggested that Alx4 mutants displayed syndromic urogenital malformation.