Molecular model for a complete clathrin lattice from electron cryomicroscopy : Abstract : Nature

Nature 432, 573-579 (2 December 2004) | doi:10.1038/nature03079; Received 29 August 2004; Accepted 5 October 2004; Published online 24 October 2004

Molecular model for a complete clathrin lattice from electron cryomicroscopy

Alexander Fotin¹, Yifan Cheng², Piotr Sliz³, Nikolaus Grigorieff⁴, Stephen C. Harrison³, Tomas Kirchhausen⁵ and Thomas Walz²

Biophysics Graduate Program, Department of Cell Biology, Harvard Medical School, 240 Longwood Avenue, Boston, Massachusetts 02115, USA
Department of Cell Biology, Harvard Medical School, 240 Longwood Avenue, Boston, Massachusetts 02115, USA
Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, and Howard Hughes Medical Institute, 250 Longwood Avenue, Boston, Massachusetts 02115, USA
Howard Hughes Medical Institute and Department of Biochemistry, Rosenstiel Basic Medical Sciences Research Center, Brandeis University, 415 South Street, Waltham, Massachusetts 02454, USA
Department of Cell Biology and the CBR Institute for Biomedical Research, Harvard Medical School, 200 Longwood Avenue, Boston, Massachusetts 02115, USA

Correspondence to: Stephen C. Harrison³ Email: Harrison@crystal.harvard.edu
Coordinates have been deposited in the Protein Data Bank, accession number 1XI4.

Clathrin-coated vesicles are important vehicles of membrane traffic in cells. We report the structure of a clathrin lattice at subnanometre resolution, obtained from electron cryomicroscopy of coats assembled in vitro. We trace most of the 1,675-residue clathrin heavy chain by fitting known crystal structures of two segments, and homology models of the rest, into the electron microscopy density map. We also define the position of the central helical segment of the light chain. A helical tripod, the carboxy-terminal parts of three heavy chains, projects inward from the vertex of each three-legged clathrin triskelion, linking that vertex to 'ankles' of triskelions centred two vertices away. Analysis of coats with distinct diameters shows an invariant pattern of contacts in the neighbourhood of each vertex, with more variable interactions along the extended parts of the triskelion 'legs'. These invariant local interactions appear to stabilize the lattice, allowing assembly and uncoating to be controlled by events at a few specific sites.

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