Original Article
Cell Research (2007) 17:881–894. doi: 10.1038/cr.2007.77; published online 18 September 2007
Genome-wide analysis of the phospholipase D family in Oryza sativa and functional characterization of PLD
1 in seed germination
Gang Li1, Fang Lin1,2 and Hong-Wei Xue1
- 1National Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai 200032, China
- 2Current address: Department of Pharmacology, Laboratory of Aging and Nervous Diseases, Soochow University School of Medicine, Suzhou 215123, China
Correspondence: Hong-Wei Xue, Tel: +86 21 54924059; Fax: +86 21 54924060 E-mail: hwxue@sibs.ac.cn
Received 1 February 2007; Revised 10 May 2007; Accepted 4 June 2007.
Abstract
Phospholipase D (PLD) plays a critical role in plant growth and development, as well as in hormone and stress responses. PLD encoding genes constitute a large gene family that are present in higher plants. There are 12 members of the PLD family in Arabidopsis thaliana and several of them have been functionally characterized; however, the members of the PLD family in Oryza sativa remain to be fully described. Through genome-wide analysis, 17 PLD members found in different chromosomes have been identified in rice. Protein domain structural analysis reveals a novel subfamily, besides the C2-PLDs and PXPH-PLDs, that is present in rice – the SP-PLD. SP-PLD harbors a signal peptide instead of the C2 or PXPH domains at the N-terminus. Expression pattern analysis indicates that most PLD-encoding genes are differentially expressed in various tissues, or are induced by hormones or stress conditions, suggesting the involvement of PLD in multiple developmental processes. Transgenic studies have shown that the suppressed expression of rice PLD
1 results in reduced sensitivity to exogenous ABA during seed germination. Further analysis of the expression of ABA signaling-related genes has revealed that PLD
1 stimulates ABA signaling by activating SAPK, thus repressing GAmyb expression and inhibiting seed germination.
Keywords:
Oryza sativa, PLD
1, ABA, seed germination
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