Short Communication

Cell Research (2002) 12, 79–82. doi:10.1038/sj.cr.7290113

Identification of alpha NF-kappaB site in the negative regulatory element(alt epsilon-NRAII) of human alt epsilon-globin gene and its binding protein NF-kappaB p50 in the nuclei of K562 cells

Chun Hui HOU1, Jian HUANG1 and Ruo Lan QIAN1

1Group of Globin Gene Expression and Regulation, State Key Labortory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China

Correspondence: Prof. Ruo Lan QIAN, Tel: 021-64315030-2092; Fax: 021-64331090; e-mail: qianlab@sunm.shcnc.ac.cn

Received 25 October 2001; Revised 18 December 2001; Accepted 8 January 2002.

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Abstract

The developmental control of the human e-globin gene expression is mediated by transcription regulatory elements in the 5' flanking DNA of this gene. Sequence analysis has revealed a DNA motif (GGGGAATTTGCT) similar to NF-kappaB consensus sequence resides in the negative regulatory element (-3028bp approx -2902bp, termed e-NRAII) 5' to the cap site of this gene. NRF DNA fragment (-3010bp approx -2986bp) containing the NF-kappaB motif similar sequence was synthesized and used in electrophoresis mobility shift assay (EMSA) and competitive analysis. Data showed that a protein factor from nuclear extracts of K562 cells specifically interacted with NRF DNA fragment. The synthetic NF DNA fragment (containing NF-kappaB consensus sequence) could competed for the protein binding, but MNF DNA fragment (mutated NF-kappaB motif) could not, suggesting that the binding protein is a member of NF-kappaB/Rel family. Western blot assay demonstrated that the molecular weight of NF-kappaB protein in the nuclei of K562 cells is 50ku. We suggested that NF-kappaB p50 may play an important role in the regulation of human e-globin gene expression.

Keywords:

Human e-globin gene, negative regulatory element, NF-kB p50

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