State of the Art
Clinical Pharmacology & Therapeutics (2007) 81, 328–345. doi:10.1038/sj.clpt.6100087
The Pharmacogenetics Research Network: From SNP Discovery to Clinical Drug Response
K M Giacomini1, C M Brett2, R B Altman3, N L Benowitz4, M E Dolan5, D A Flockhart6, J A Johnson7, D F Hayes8, T Klein3, R M Krauss9, D L Kroetz1, H L McLeod10, A T Nguyen6, M J Ratain5, M V Relling11, V Reus12, D M Roden13, C A Schaefer14, A R Shuldiner15, T Skaar6, K Tantisira16, R F Tyndale17, L Wang18, R M Weinshilboum18, S T Weiss16 and I Zineh7 for the Pharmacogenetics Research Network
- 1Department of Biopharmaceutical Sciences, University of California San Francisco, San Francisco, California, USA
- 2Department of Anesthesia, University of California, San Francisco, San Francisco, California, USA
- 3Department of Genetics, Stanford University Medical Center, Stanford, California, USA
- 4Department of Medicine, University of California, San Francisco, San Francisco, California, USA
- 5School of Medicine, University of Chicago, Chicago, Illinois, USA
- 6Indiana University School of Medicine, Indianapolis, Indiana, USA
- 7School of Medicine, University of Florida, Gainesville, Florida, USA
- 8University of Michigan Cancer Center, Ann Arbor, Michigan, USA
- 9Children's Hospital Oakland Research Institute, Oakland, California, USA
- 10University of North Carolina, Chapel Hill, North Carolina, USA
- 11St Jude's Children's Research Hospital, Memphis, Tennessee, USA
- 12Department of Psychiatry, University of California, San Francisco, San Francisco, California, USA
- 13School of Medicine, Vanderbilt University, Nashville, Tennessee, USA
- 14Division of Research, Kaiser Permanente, Oakland, California, USA
- 15Schoolof Medicine, University of Maryland, Baltimore, Maryland, USA
- 16Channing Laboratory, Brigham and Women's Hospital, Boston, Massachusetts, USA
- 17University of Toronto, Toronto, Canada
- 18Mayo Clinic College of Medicine, Rochester, Minnesota, USA
Correspondence: KM Giacomini, (kathy.giacomini@ucsf.edu)
Abstract
The NIH Pharmacogenetics Research Network (PGRN) is a collaborative group of investigators with a wide range of research interests, but all attempting to correlate drug response with genetic variation. Several research groups concentrate on drugs used to treat specific medical disorders (asthma, depression, cardiovascular disease, addiction of nicotine, and cancer), whereas others are focused on specific groups of proteins that interact with drugs (membrane transporters and phase II drug-metabolizing enzymes). The diverse scientific information is stored and annotated in a publicly accessible knowledge base, the Pharmacogenetics and Pharmacogenomics Knowledge base (PharmGKB). This report highlights selected achievements and scientific approaches as well as hypotheses about future directions of each of the groups within the PGRN. Seven major topics are included: informatics (PharmGKB), cardiovascular, pulmonary, addiction, cancer, transport, and metabolism.
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