Review

Cell Death and Differentiation (2009) 16, 1093–1107; doi:10.1038/cdd.2009.44; published online 17 April 2009

Guidelines for the use and interpretation of assays for monitoring cell death in higher eukaryotes

Edited by G Melino

L Galluzzi1,2,3, S A Aaronson4, J Abrams5, E S Alnemri6, D W Andrews7, E H Baehrecke8, N G Bazan9, M V Blagosklonny10, K Blomgren11,12, C Borner13, D E Bredesen14,15, C Brenner16,17, M Castedo1,2,3, J A Cidlowski18, A Ciechanover19, G M Cohen20, V De Laurenzi21, R De Maria22,23, M Deshmukh24, B D Dynlacht25, W S El-Deiry26, R A Flavell27,28, S Fulda29, C Garrido30,31, P Golstein32,33,34, M-L Gougeon35, D R Green36, H Gronemeyer37,38,39, G Hajnóczky40, J M Hardwick41, M O Hengartner42, H Ichijo43, M Jäättelä44, O Kepp1,2,3, A Kimchi45, D J Klionsky46, R A Knight47, S Kornbluth48, S Kumar49, B Levine28,50, S A Lipton51,52,53,54, E Lugli55, F Madeo56, W Malorni57, J-CW Marine58,59, S J Martin60, J P Medema61,62, P Mehlen63,64,65, G Melino20,66, U M Moll67,68,69, E Morselli1,2,3, S Nagata70, D W Nicholson71, P Nicotera20, G Nuñez72, M Oren73, J Penninger74, S Pervaiz75,76,77, M E Peter78, M Piacentini79,80, J H M Prehn81, H Puthalakath82, G A Rabinovich83, R Rizzuto84, C M P Rodrigues85, D C Rubinsztein86, T Rudel87, L Scorrano88,89, H-U Simon90, H Steller28,91, J Tschopp92, Y Tsujimoto93, P Vandenabeele59,94, I Vitale1,2,3, K H Vousden95, R J Youle96, J Yuan97, B Zhivotovsky98 and G Kroemer1,2,3

  1. 1INSERM, U848, F-94805 Villejuif, France
  2. 2Institut Gustave Roussy, F-94805 Villejuif, France
  3. 3Université Paris Sud-XI, F-94805 Villejuif, France
  4. 4Department of Oncological Sciences, Mount Sinai School of Medicine, New York, NY 10029, USA
  5. 5Department of Cell Biology, UT Southwestern Medical Center, Dallas, TX 75390, USA
  6. 6Department of Biochemistry and Molecular Biology, Center for Apoptosis Research, Kimmel Cancer Institute, Thomas Jefferson University, Philadelphia, PA 19107-5587, USA
  7. 7Department of Biochemistry and Biomedical Sciences, McMaster University, L8N 3Z5 Hamilton, Canada
  8. 8Department of Cancer Biology, University of Massachusetts Medical School, Worcester, MA 01605-2324, USA
  9. 9Neuroscience Center of Excellence, School of Medicine, Louisiana State University Health Sciences Center, New Orleans, LA 70112, USA
  10. 10Roswell Park Cancer Institute, Buffalo, NY 14263, USA
  11. 11Center for Brain Repair and Rehabilitation, Institute of Neuroscience and Physiology, University of Gothenburg, SE-405 30 Gothenburg, Sweden
  12. 12Department of Pediatric Oncology, The Queen Silvia Children's Hospital, SE-416 85 Gothenburg, Sweden
  13. 13Institute of Molecular Medicine and Cell Research (ZBMZ), Albert-Ludwigs-Universität Freiburg, 79104 Freiburg, Germany
  14. 14Buck Institute for Age Research, Novato, CA 94945, USA
  15. 15University of California – San Francisco, San Francisco, CA 94143, USA
  16. 16University of Versailles/St Quentin, 78035 Versailles, France
  17. 17CNRS, UMR8159, 78035 Versailles, France
  18. 18National Institutes of Environmental Health Sciences, NIH, Duhram, NC 27709, USA
  19. 19Vascular and Tumor Biology Research Center, The Rappaport Faculty of Medicine, Technion – Israel Institute of Technology, 31096 Haifa, Israel
  20. 20Medical Research Council, Toxicology Unit, Leicester University, Leicester LE1 9HN, UK
  21. 21Dipartimento di Scienze Biomediche, Università 'G. d'Annunzio' Chieti-Pescara, 66100 Chieti, Italy
  22. 22Department of Hematology, Oncology and Molecular Medicine, Istituto Superiore di Sanità, 00161 Rome, Italy
  23. 23Mediterranean Institute of Oncology, 95030 Catania, Italy
  24. 24Neuroscience Center, Department of Cell and Developmental Biology, University of North Carolina, Chapel Hill, NC 27599-7250, USA
  25. 25Department of Pathology, New York University School of Medicine, New York, NY 10016, USA
  26. 26Hematology-Oncology Division, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA
  27. 27Department of Immunobiology, Yale University School of Medicine, New Haven, CT 06520, USA
  28. 28Howard Hughes Medical Institute, Chevy Chase, MD 20815-6789, USA
  29. 29University Children's Hospital, 89075 Ulm, Germany
  30. 30INSERM, UMR866, 21049 Dijon, France
  31. 31Faculty of Medicine and Pharmacy, University of Burgundy, 21049 Dijon, France
  32. 32INSERM, U631, 13288 Marseille, France
  33. 33CNRS, UMR6102, 13288 Marseille, France
  34. 34Centre d'Immunologie de Marseille-Luminy, Aix Marseille Université, 13288 Marseille, France
  35. 35Institut Pasteur, Antiviral Immunity, Biotherapy and Vaccine Unit, 75015 Paris, France
  36. 36Department of Immunology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA
  37. 37Department of Cancer Biology – Institut de Génétique et de Biologie Moléculaire et Cellulaire, 67404 Illkirch, France
  38. 38CNRS, UMR7104, 67404 Illkirch, France
  39. 39INSERM, U964, 67404 Illkirch, France
  40. 40Department of Pathology, Anatomy and Cell Biology, Thomas Jefferson University, Philadelphia, PA 19107, USA
  41. 41Department of Pharmacology and Molecular Sciences, Johns Hopkins University, Baltimore, MD 21205, USA
  42. 42Institute of Molecular Biology, University of Zurich, 8057 Zurich, Switzerland
  43. 43Graduate School of Pharmaceutical Sciences, University of Tokyo, Tokyo 113-0033, Japan
  44. 44Danish Cancer Society, Department of Apoptosis, Institute of Cancer Biology, DK-2100 Copenhagen, Denmark
  45. 45Department of Molecular Genetics, Weizmann Institute of Science, 76100 Rehovot, Israel
  46. 46Life Sciences Institute and Department of Molecular, Cellular, and Developmental Biology and Biological Chemistry, University of Michigan, Ann Arbor, MI 48109, USA
  47. 47Institute of Child Health, University College London, London WC1N 1EH, UK
  48. 48Duke University School of Medicine, Durham, NC 27710, USA
  49. 49Centre for Cancer Biology, Hanson Institute, Adelaide, South Australia 5000, Australia
  50. 50Southwestern Medical Center, University of Texas, Dallas, TX 75390, USA
  51. 51Burnham Institute for Medical Research, La Jolla, CA 92037, USA
  52. 52The Salk Institute for Biological Studies, La Jolla, CA 92037, USA
  53. 53The Scripps Research Institute, La Jolla, CA 92037, USA
  54. 54Univerisity of California-San Diego, La Jolla, CA 92093, USA
  55. 55Immunotechnology Section, Vaccine Research Center, National Institute of Allergy and Infectious Diseases, NIH, Bethesda, MD 20892, USA
  56. 56Institute of Molecular Biosciences, University of Graz, 8010 Graz, Austria
  57. 57Department of Therapeutic Research and Medicines Evaluation, Section of Cell Aging and Degeneration, Istituto Superiore di Sanità, 00161 Rome, Italy
  58. 58Laboratory for Molecular Cancer Biology, VIB, 9052 Ghent, Belgium
  59. 59Department for Molecular Biology, Ghent University, 9052 Ghent, Belgium
  60. 60Department of Genetics, Trinity College, Dublin 2, Ireland
  61. 61Center for Experimental and Molecular Medicine, Academic Medical Center, 1105 AZ Amsterdam, The Netherlands
  62. 62University of Amsterdam, 1012 ZA Amsterdam, The Netherlands
  63. 63Apoptosis, Cancer, and Development Laboratory, Centre Léon Berard, 69008 Lyon, France
  64. 64CNRS, UMR5238, 69008 Lyon, France
  65. 65Université de Lyon, 69008 Lyon, France
  66. 66Department of Experimental Medicine and Biochemical Sciences, University of Rome 'Tor Vergata', 00133 Rome, Italy
  67. 67Department of Pathology, Stony Brook University, Stony Brook, NY 11794-8691, USA
  68. 68Department of Molecular Oncology, Göttingen Center of Molecular Biosciences, 37077 Göttingen, Germany
  69. 69Faculty of Medicine, University of Göttingen, 37077 Göttingen, Germany
  70. 70Department of Medical Chemistry, Graduate School of Medicine, University of Kyoto, Kyoto 606-8501, Japan
  71. 71Merck Research Laboratories, Rahway, NJ 07065-0900, USA
  72. 72University of Michigan Medical School, Ann Arbor, MI 48109, USA
  73. 73Department of Molecular Cell Biology, Weizmann Institute of Science, 76100 Rehovot, Israel
  74. 74Institute of Molecular Biotechnology of the Austrian Academy of Science, 1030 Vienna, Austria
  75. 75Department of Physiology, Yong Loo Lin School of Medicine, Graduate School for Integrative Sciences and Engineering, National University of Singapore, 117597 Singapore
  76. 76Singapore-MIT Alliance, National University of Singapore, 117576 Singapore
  77. 77Duke-NUS Graduate Medical School, 169547 Singapore
  78. 78Ben May Department for Cancer Research, University of Chicago, Chicago, IL 60637, USA
  79. 79Laboratory of Cell Biology, National Institute for Infectious Diseases IRCCS 'L. Spallanzani', 00149 Rome, Italy
  80. 80Department of Biology, University of Rome 'Tor Vergata', 00133 Rome, Italy
  81. 81Department of Physiology and Medical Physics, Royal College of Surgeons in Ireland, Dublin 2, Ireland
  82. 82Department of Biochemistry, La Trobe University, 3086 Victoria, Australia
  83. 83Laboratorio de Inmunopatología, Instituto de Biología y Medicina Experimental (IBYME- CONICET), C1428 Buenos Aires, Argentina
  84. 84Department of Biomedical Sciences, University of Padova, 35121 Padova, Italy
  85. 85iMed.UL, Faculty of Pharmacy, University of Lisbon, 1649-003 Lisbon, Portugal
  86. 86Cambridge Institute for Medical Research, Cambridge CB2 0XY, UK
  87. 87Biocenter, University of Würzburg, 97074 Würzburg, Germany
  88. 88Department of Cell Physiology and Metabolism, University of Geneva Medical School, 1211 Geneva, Switzerland
  89. 89Dulbecco-Telethon Institute, Venetian Institute of Molecular Medicine, 35129 Padova, Italy
  90. 90Department of Pharmacology, University of Bern, 3010 Bern, Switzerland
  91. 91Laboratory of Apoptosis and Cancer Biology, The Rockefeller University, New York, NY 10065, USA
  92. 92Department of Biochemistry, University of Lausanne, 1066 Epalinges, Switzerland
  93. 93Department of Medical Genetics, Osaka University Medical School, Osaka 565-0871, Japan
  94. 94Department for Molecular Biomedical Research, VIB, 9052 Ghent, Belgium
  95. 95The Beatson Institute for Cancer Research, Glasgow G61 1BD, UK
  96. 96Biochemistry Section, Surgical Neurology Branch, National Institute of Neurological Disorders and Stroke, NIH, Bethesda, MD 20892, USA
  97. 97Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA
  98. 98Institute of Environmental Medicine, Division of Toxicology, Karolinska Institute, SE- 171 77 Stockholm, Sweden

Correspondence: G Kroemer, INSERM, U848, Institut Gustave Roussy, PR1, 39, rue Camille Desmoulins, F-94805 Villejuif, France. Tel: +33-1-4211-6046; Fax: +33-1-4211-6047; E-mail: kroemer@orange.fr

Received 12 March 2009; Accepted 17 March 2009; Published online 17 April 2009.

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Abstract

Cell death is essential for a plethora of physiological processes, and its deregulation characterizes numerous human diseases. Thus, the in-depth investigation of cell death and its mechanisms constitutes a formidable challenge for fundamental and applied biomedical research, and has tremendous implications for the development of novel therapeutic strategies. It is, therefore, of utmost importance to standardize the experimental procedures that identify dying and dead cells in cell cultures and/or in tissues, from model organisms and/or humans, in healthy and/or pathological scenarios. Thus far, dozens of methods have been proposed to quantify cell death-related parameters. However, no guidelines exist regarding their use and interpretation, and nobody has thoroughly annotated the experimental settings for which each of these techniques is most appropriate. Here, we provide a nonexhaustive comparison of methods to detect cell death with apoptotic or nonapoptotic morphologies, their advantages and pitfalls. These guidelines are intended for investigators who study cell death, as well as for reviewers who need to constructively critique scientific reports that deal with cellular demise. Given the difficulties in determining the exact number of cells that have passed the point-of-no-return of the signaling cascades leading to cell death, we emphasize the importance of performing multiple, methodologically unrelated assays to quantify dying and dead cells.

Keywords:

apoptosis, caspases, cytofluorometry, immunofluorescence microscopy, mitotic catastrophe, necrosis

Abbreviations:

AIF, apoptosis-inducing factor; AO, acridine orange; CMXRos, chloromethyl-X-rosamine; Cyt c, cytochrome c; Deltapsim, mitochondrial transmembrane potential; DAPI, 4',6-diamidino-2-phenylindole; DiOC6(3), 3,3'dihexiloxalocarbocyanine iodide; EB, ethidium bromide; ELISA, enzyme-linked immunosorbent assay; GFP, green fluorescent protein; H2DCFDA, 2',7'-dichlorodihydrofluorescein diacetate; HE, hydroethidine; HPLC, high-pressure liquid chromatography; HTS, high-throughput screening; IMS, mitochondrial intermembrane space; JC-1, 5,5',6,6'-tetrachloro-1,1',3,3'-tetraethylbenzimidazolcarbocyanine iodide; LDH, lactate dehydrogenase; MOMP, mitochondrial outer membrane permeabilization; MPT, mitochondrial permeability transition; MS, mass spectrometry; MTS, 3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium; MTT, 3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyl tetrazolium bromide; NCCD, Nomenclature Committee on Cell Death; NMP, nuclear matrix protein; NMR, proton nuclear magnetic resonance; PI, propidium iodide; TMRM, tetramethylrhodamine methyl ester; TUNEL, terminal deoxynucleotidyl transferase-mediated dUTP nick-end labeling; WST-1, 4-[3-(4-iodophenyl)-2-(4-nitrophenyl)-2H-5-tetrazolio]-1,3-benzene disulfonate

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