Genetics and Genomics
British Journal of Cancer (2006) 94, 599–608. doi:10.1038/sj.bjc.6602968 www.bjcancer.com
Published online 31 January 2006
Transcriptional profiling of Epstein–Barr virus (EBV) genes and host cellular genes in nasal NK/T-cell lymphoma and chronic active EBV infection
Y Zhang1, J H Ohyashiki2, T Takaku1, N Shimizu3 and K Ohyashiki1
- 1First Department of Internal Medicine, Tokyo Medical University, Tokyo, Japan
- 2Intractable Immune System Disease Research Center, Tokyo Medical University, 6-7-1, Nishi-shinjuku, Shinjuku-ku, Tokyo 160-0023, Japan
- 3Department of Virology, Medical Research Institute, Tokyo Medical and Dental University, Tokyo, Japan
Correspondence: JH Ohyashiki, E-mail: junko@hh.iij4u.or.jp
Received 25 August 2005; Revised 6 December 2005; Accepted 23 December 2005; Published online 31 January 2006.
Abstract
Nasal NK/T-cell lymphoma is an aggressive subtype of non-Hodgkin lymphoma (NHL) that is closely associated with Epstein–Barr virus (EBV). The clonal expansion of EBV-infected NK or T cells is also seen in patients with chronic active EBV (CAEBV) infection, suggesting that two diseases might share a partially similar mechanism by which EBV affects host cellular gene expression. To understand the pathogenesis of EBV-associated NK/T-cell lymphoproliferative disorders (LPD) and design new therapies, we employed a novel EBV DNA microarray to compare patterns of EBV expression in six cell lines established from EBV-associated NK/T-cell LPD. We found that expression of BZLF1, which encodes the immediate-early gene product Zta, was expressed in SNK/T cells and the expression levels were preferentially high in cell lines from CAEBV infection. We also analyzsd the gene expression patterns of host cellular genes using a human oligonucleotide DNA microarray. We identified a subset of pathogenically and clinically relevant host cellular genes, including TNFRSF10D, CDK2, HSPCA, IL12A as a common molecular biological properties of EBV-associated NK/T-cell LPD and a subset of genes, such as PDCD4 as a putative contributor for disease progression. This study describes a novel approach from the aspects of viral and host gene expression, which could identify novel therapeutic targets in EBV-associated NK/T-cell LPD.
Keywords:
Epstein Barr virus, nasal NK/T-cell lymphoma, EBV DNA microarray, CAEBV infection
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