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Higher frequency of genetic variants conferring increased risk for ADRs for commonly used drugs treating cancer, AIDS and tuberculosis in persons of African descent

Abstract

There is established clinical evidence for differences in drug response, cure rates and survival outcomes between different ethnic populations, but the causes are poorly understood. Differences in frequencies of functional genetic variants in key drug response and metabolism genes may significantly influence drug response differences in different populations. To assess this, we genotyped 1330 individuals of African (n=372) and European (n=958) descent for 4535 single-nucleotide polymorphisms in 350 key drug absorption, distribution, metabolism, elimination and toxicity genes. Important and remarkable differences in the distribution of genetic variants were observed between Africans and Europeans and among the African populations. These could translate into significant differences in drug efficacy and safety profiles, and also in the required dose to achieve the desired therapeutic effect in different populations. Our data points to the need for population-specific genetic variation in personalizing medicine and care.

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Acknowledgements

We acknowledged the participation of all those who took part in this study from the different Africa countries and Canada. We also acknowledge the contributions of Bill Beggs and other members of the Tishkoff Lab (University of Pennsylvania) and the Canadian Pharmacogenomics Network for Drug Safety consortium (University of British Columbia) for the enrolment of the study participants and for the handling of the samples, assays and records. This work was supported by the Canadian Institutes of Health Research, Child and Family Research Institute (Bertram Hoffmeister Postdoctoral Fellowship Award for Folefac Aminkeng), Canada Foundation for Innovation, Genome British Columbia. Additional funding was provided by Child & Family Research Institute (Vancouver, BC), Faculty of Medicine of the University of British Columbia, The Canadian Gene Cure Foundation and C17 Research Network and Childhood Cancer Foundation-Candlelighters Canada, as well as NSF (BCS-0827436) and NIH (R01GM076637, 8 DP1 ES022577-04) grants to S.A.T.

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Appendix

Appendix

The Canadian Pharmacogenomics Network for Drug Safety Consortium

The Canadian Pharmacogenomics Network for Drug Safety Consortium (Participants are arranged geographically by institution across Canada)—Vancouver, BC, Children’s Hospital, Child & Family Research Institute, CMMT, POPi: Michael Hayden, Bruce Carleton, Colin Ross, Stuart MacLeod, Wyeth Wasserman, Craig Mitton, Anne Smith, Claudette Hildebrand, Lucila Castro Pastrana, Reza Ghannadan, Rod Rassekh, Jonathan Lim, Fudan Miao, Henk Visscher, Kusala Pussegoda, Folefac Aminkeng, Michelle Higginson, Nasim Massah,Mojgan Yazdanpanah, Johanne Sistonen, Ricardo Jimenez, Adrienne Borrie, Ursula Amstutz, Shevaun Hughes, Kaitlyn Shaw; Calgary, Alberta Children’s Hospital: Cheri Nijssen-Jordan, David Johnson, Linda Verbeek, Rick Kaczowka, Patti Stevenson, Andrea Hurton; Edmonton, Stollery Children’s Hospital: Paul Grundy, Kent Stobart, Bev Wilson, Sunil Desai, Maria Spavor, Linda Churcher, Terence Chow; Winnipeg, Winnipeg Children’s Hospital: Kevin Hall, Nick Honcharik, Sara Israels, Shanna Chan, Byron Garnham, Michelle Staub; London, London Health Sciences Centre: Michael Rieder, Becky Malkin; Hamilton, McMaster Children’s Hospital: Carol Portwine, Amy Cranston; Toronto, Hospital for Sick Children: Gideon Koren, Shinya Ito, Paul Nathan, Mark Greenberg, Facundo Garcia Bournissen, Miho Inoue, Sachi Sakaguchi, Toshihiro Tanaka, Hisaki Fujii, Mina Ogawa, Ryoko Ingram, Taro Kamiya & Smita Karande; Kingston, Kingston General Hospital: Mariana Silva, Stephanie Willing; Ottawa, Children’s Hospital of Eastern Ontario: Régis Vaillancourt, Pat Elliott-Miller, Donna Johnston, Herpreet Mankoo, Elaine Wong, Brenda Wilson, Lauren O’Connor; Health Canada: Maurica Maher; Montreal, Hospital Sainte-Justine: Jean-Francois Bussières, Denis Lebel, Pierre Barret, Aurélie Closon, Eve Coulson; Montreal Heart Institute: Marie-Pierre Dubé, Michael Phillips; McGill University Health Centre-Montreal Children’s Hospital: Nada Jabado, Anelise Espirito Santo, Martine Nagy; McGill University: Denise Avard; Halifax, IWK Health Centre: Margaret Murray, Darlene Boliver, Marilyn Tiller and Carol-anne Osborne.

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Aminkeng, F., Ross, C., Rassekh, S. et al. Higher frequency of genetic variants conferring increased risk for ADRs for commonly used drugs treating cancer, AIDS and tuberculosis in persons of African descent. Pharmacogenomics J 14, 160–170 (2014). https://doi.org/10.1038/tpj.2013.13

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