Table 3: Test set of effectors and effector candidates that have been experimentally shown to localize to the plant chloroplast and the predictions by several classifiers.

From: LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell

Table 3: Test set of effectors and effector candidates that have been experimentally shown to localize to the plant chloroplast and the predictions by several classifiers.
EffectorCTP1CTP2CTP3MLP124111PST03196PST18220ToxA
ReferencePetre et al. (2015b), Petre et al. (2015a)Petre et al. (2016)Manning and Ciuffetti (2005)
SpeciesMelampsora larici-populinaM. liniM. larici-populinaPuccinia striiformis f. sp. triticiPyrenophora tritici-repentis
CommentAlso in mitochondriaAlso in cytosolic aggregates Also in nucleusAlso in cytoplasm
Subcellular localization prediction
LOCALIZERChloroplastChloroplastChloroplastChloroplast, Mitochondria, NucleusChloroplast
ChloroPChloroplast
TargetPMitochondriaMitochondriaMitochondria
WoLF PSORTChloroplastChloroplastChloroplastMitochondriaCytosolNucleusCytoskeleton
YLOCSecretedSecretedSecretedSecretedChloroplastNucleusCytoplasm
Predotar
BaCelLoSecretedSecretedSecretedSecretedNucleusNucleusNucleus
  1. All methods except LOCALIZER were supplied with the mature effector sequences.