Table 1: Patterns considered for members of cecropin, β-defensin and lactotransferrin families.

From: Leveraging family-specific signatures for AMP discovery and high-throughput annotation

Table 1: Patterns considered for members of cecropin, β-defensin and lactotransferrin families.
FamilyPatternSequence length used for pattern creation
β-defensinC-x-C-x(0,2)-R-x(1,3)-C-x(2)-[GP]-x-R-R-x-G-T-C-[IL]-[FY]-Q-[GN]-R-[LV]-[WY]-[AT]-F-C-C30
C-x(0,1)-R-x(2,4)-C-[AIP]-x(2)-[EK]-x(3)-[GIL]-x(3)-[SV]-[GN]-x(4)-[FLV]-[HKR]34
CecropinL-[ES]-K-[TV]-x-[KR]-x-[IL]-[ER]-N-[GS]-[AI]-x-[KR]-x(2)-[GS]-[EP]-[AG]-[IV]-A-[IV]-[AI]-[GI]-x-[AG]31
K-[ILV]-x-K-K-I-E-x(2)-G-x(0,1)-R-[NV]-[FIV]-[KR]-[ADN]-[AG]-x(3)-[AL]-[AGP]-[PV]-[AV]-[AIV]-[AEG]-V-x-[AG]-x-[AG]35
W-x-[LPV]-F-K-x(0,2)-E-x(2)-G-[QR]-[NR]-[IV]-R-[DN]-[AG]-[IV]-[IV]-x-A-[AG]-[AP]-[AV]-[AIV]-[AET]-[TV]-[GLV]-[GQ]-[AEQS]-A-x(2)-[AIL]37
LactotransferrinW-Q-x(0,1)-R-x(0,1)-M-[KR]-K-[LV]Undefined