Table 2: The best-fit nucleotide substitution model and substitution rate estimation for each partitioning schemes.

From: Identification and analysis of mtDNA genomes attributed to Finns reveal long-stagnant demographic trends obscured in the total diversity

Scheme number Composition Best model according to the PartitionFinder Best model according to the Bayesian analysis with BEAST v1.8.2 Substitution rate this study (μ/Site/Year × 10−8) Substitution rate Rieux et al. 2014 (μ/Site/Year × 10−8)
1 Nucleotides 1–576 and 16,024–16,569 GTR+ Γ+ Inv TrN+ Γ+ Inv 20.56 [12.49, 29.01] 31.43 [22.56, 40.31]*
2 rRNA, tRNA HKY+ Γ+ Inv HKY+ Γ+ Inv 1.58 [0.94, 2.30] 1.01 [0.76, 1.27]
3 PC1, PC2 TrN+ Γ+ Inv TrN+ Γ+ Inv 1.80 [1.17, 2.40] 0.76 [0.57, 0.94]
4 PC3 TrN+ Γ+ Inv TrN+ Γ+ Inv 3.04 [1.92, 4.21] 3.32 [2.57, 4.07]