We read the article by Gerhard and colleagues with interest.1 They report that they have identified a ZNF23 rs531705739 variant (T40R) by reanalyzing the whole exome sequencing data we shared with them in a kindred we reported on earlier.2 We greatly appreciate their effort and interest to reanalyze our data independently. Based on their reanalysis of our whole exome sequencing data, the ZNF23 rs531705739 variant segregated with affected members in the kindred and was not present in unrelated spouses. They also report a noncoding region that segregates with affected members but do not specify the sequence.
We performed Sanger sequencing of peripheral blood DNA from the kindred to experimentally validate the findings of Gerhard et al. Although we could validate the ZNF23 rs531705739 variant (T40R) segregates with six affected family members, two additional family members who developed thyroid cancer during surveillance do not have the variant (Fig. 1). Although, several groups have not validated complete segregation of the HABP2 (G434E) variant in affected members with familial non-medullary thyroid cancer, the HABP2 rs7080536 variant (G434E) completely segregates in all the affected members in the kindred including the two newly diagnosed members during surveillance (Fig. 1). We appreciate the efforts of colleagues to independently validate our data as this is the only way we will be able to make progress in identifying true susceptibility gene(s) that cause familial nonmedullary thyroid cancer.
References
Gerhard, G. S. et al. Pitfalls of exome sequencing: a case study of the attribution of HABP2 rs7080536 in familial non-medullary thyroid cancer. NPJ Genom. Med. 2, 8 (2017).
Gara, S. K. et al. Germline HABP2 mutation causing familial nonmedullary thyroid cancer. N. Engl. J. Med. 373, 448–455 (2015).
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Kebebew, E., Kumar Gara, S. To the editor. npj Genomic Med 2, 21 (2017). https://doi.org/10.1038/s41525-017-0026-3
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DOI: https://doi.org/10.1038/s41525-017-0026-3