Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Article
  • Published:

The metabolic regulator Lamtor5 suppresses inflammatory signaling via regulating mTOR-mediated TLR4 degradation

Abstract

Comprehensive immune responses are essential for eliminating pathogens but must be tightly controlled to avoid sustained immune activation and potential tissue damage. The engagement of TLR4, a canonical pattern recognition receptor, has been proposed to trigger inflammatory responses with different magnitudes and durations depending on TLR4 cellular compartmentalization. In the present study, we identify an unexpected role of Lamtor5, a newly identified component of the amino acid-sensing machinery, in modulating TLR4 signaling and controlling inflammation. Specifically, Lamtor5 associated with TLR4 via their LZ/TIR domains and facilitated their colocalization at autolysosomes, preventing lysosomal tethering and the activation of mTORC1 upon LPS stimulation and thereby derepressing TFEB to promote autophagic degradation of TLR4. The loss of Lamtor5 was unable to trigger the TFEB-driven autolysosomal pathway and delay degradation of TLR4, leading to sustained inflammation and hence increased mortality among Lamtor5 haploinsufficient mice during endotoxic shock. Intriguingly, nutrient deprivation, particularly leucine deprivation, blunted inflammatory signaling and conferred protection to endotoxic mice. This effect, however, was largely abrogated upon Lamtor5 deletion. We thus propose a homeostatic function of Lamtor5 that couples pathogenic insults and nutrient availability to optimize the inflammatory response; this function may have implications for TLR4-associated inflammatory and metabolic disorders.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7

Similar content being viewed by others

References

  1. Kawai, T. & Akira, S. The role of pattern-recognition receptors in innate immunity: update on toll-like receptors. Nat. Immunol. 11, 373–384 (2010).

    Article  CAS  PubMed  Google Scholar 

  2. Liu, J. & Cao, X. Cellular and molecular regulation of innate inflammatory responses. Cell. Mol. Immunol. 13, 711–721 (2016).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Medzhitov, R. Origin and physiological roles of inflammation. Nature 454, 428–435 (2008).

    Article  CAS  PubMed  Google Scholar 

  4. Brubaker, S. W., Bonham, K. S., Zanoni, I. & Kagan, J. C. Innate immune pattern recognition: a cell biological perspective. Annu. Rev. Immunol. 33, 257–290 (2015).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Gay, N. J., Symmons, M. F., Gangloff, M. & Bryant, C. E. Assembly and localization of Toll-like receptor signalling complexes. Nat. Rev. Immunol. 14, 546–558 (2014).

    Article  CAS  PubMed  Google Scholar 

  6. Kagan, J. C. et al. TRAM couples endocytosis of toll-like receptor 4 to the induction of interferon-beta. Nat. Immunol. 9, 361–368 (2008).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. O'Neill, L. A., Golenbock, D. & Bowie, A. G. The history of toll-like receptors—redefining innate immunity. Nat. Rev. Immunol. 13, 453–460 (2013).

    Article  CAS  PubMed  Google Scholar 

  8. Wang, Y. et al. Lysosome-associated small Rab GTPase Rab7b negatively regulates TLR4 signaling in macrophages by promoting lysosomal degradation of TLR4. Blood 110, 962–971 (2007).

    Article  CAS  PubMed  Google Scholar 

  9. Kagan, J. C. Recycling endosomes and TLR signaling-the Rab11 GTPase leads the way. Immunity 33, 578–580 (2010).

    Article  CAS  PubMed  Google Scholar 

  10. Wang, D. et al. Ras-related protein Rab10 facilitates TLR4 signaling by promoting replenishment of TLR4 onto the plasma membrane. Proc. Natl Acad. Sci. USA 107, 13806–13811 (2010).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Liaunardy-Jopeace, A., Bryant, C. E. & Gay, N. J. The COP II adaptor protein TMED7 is required to initiate and mediate the delivery of TLR4 to the plasma membrane. Sci. Signal. 7, ra70 (2014).

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  12. Bonham, K. S. et al. A promiscuous lipid-binding protein diversifies the subcellular sites of Toll-like receptor signal transduction. Cell 156, 705–716 (2014).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  13. Jakka, P. et al. Cytoplasmic linker protein CLIP170 negatively regulates TLR4 signaling by targeting the TLR adaptor protein TIRAP. J. Immunol. 200, 704–714 (2018).

    Article  CAS  PubMed  Google Scholar 

  14. Kaur, J. & Debnath, J. Autophagy at the crossroads of catabolism and anabolism. Nat. Rev. Mol. cell Biol. 16, 461–472 (2015).

    Article  CAS  PubMed  Google Scholar 

  15. Mizushima, N. & Komatsu, M. Autophagy: renovation of cells and tissues. Cell 147, 728–741 (2011).

    Article  CAS  PubMed  Google Scholar 

  16. Jiang, P. & Mizushima, N. Autophagy and human diseases. Cell Res. 24, 69–79 (2014).

    Article  CAS  PubMed  Google Scholar 

  17. Cadwell, K. Crosstalk between autophagy and inflammatory signalling pathways: balancing defence and homeostasis. Nat. Rev. Immunol. 16, 661–675 (2016).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  18. Saitoh, T. et al. Loss of the autophagy protein Atg16L1 enhances endotoxin-induced IL-1beta production. Nature 456, 264–268 (2008).

    Article  CAS  PubMed  Google Scholar 

  19. Acharya, M. et al. Alphav Integrins combine with LC3 and atg5 to regulate toll-like receptor signalling in B cells. Nat. Commun. 7, 10917 (2016).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  20. Xu, Y. et al. Toll-like receptor 4 is a sensor for autophagy associated with innate immunity. Immunity 27, 135–144 (2007).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  21. Sanjuan, M. A. et al. Toll-like receptor signalling in macrophages links the autophagy pathway to phagocytosis. Nature 450, 1253–1257 (2007).

    Article  CAS  PubMed  Google Scholar 

  22. Yang, Q. et al. TRIM32-TAX1BP1-dependent selective autophagic degradation of TRIF negatively regulates TLR3/4-mediated innate immune responses. PLoS Pathog. 13, e1006600 (2017).

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  23. Fujita, K., Maeda, D., Xiao, Q. & Srinivasula, S. M. Nrf2-mediated induction of p62 controls toll-like receptor-4-driven aggresome-like induced structure formation and autophagic degradation. Proc. Natl Acad. Sci. USA 108, 1427–1432 (2011).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  24. Giegerich, A. K. et al. Autophagy-dependent PELI3 degradation inhibits proinflammatory IL1B expression. Autophagy 10, 1937–1952 (2014).

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  25. Melegari, M., Scaglioni, P. P. & Wands, J. R. Cloning and characterization of a novel hepatitis B virus x binding protein that inhibits viral replication. J. Virol. 72, 1737–1743 (1998).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  26. Li, Y. et al. HBXIP and LSD1 scaffolded by lncRNA hotair mediate transcriptional activation by c-Myc. Cancer Res. 76, 293–304 (2016).

    Article  CAS  PubMed  Google Scholar 

  27. Marusawa, H. et al. HBXIP functions as a cofactor of survivin in apoptosis suppression. EMBO J. 22, 2729–2740 (2003).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  28. Li, H. et al. The oncoprotein HBXIP modulates the feedback loop of MDM2/p53 to enhance the growth of breast cancer. J. Biol. Chem. 290, 22649–22661 (2015).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  29. Bar-Peled, L., Schweitzer, L. D., Zoncu, R. & Sabatini, D. M. Ragulator is a GEF for the rag GTPases that signal amino acid levels to mTORC1. Cell 150, 1196–1208 (2012).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  30. Sancak, Y. et al. Ragulator-rag complex targets mTORC1 to the lysosomal surface and is necessary for its activation by amino acids. Cell 141, 290–303 (2010).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  31. Zoncu, R. et al. mTORC1 senses lysosomal amino acids through an inside-out mechanism that requires the vacuolar H(+)-ATPase. Science 334, 678–683 (2011).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  32. Rebsamen, M. et al. SLC38A9 is a component of the lysosomal amino acid sensing machinery that controls mTORC1. Nature 519, 477–481 (2015).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  33. Marichal, T. et al. Guanine nucleotide exchange factor RABGEF1 regulates keratinocyte-intrinsic signaling to maintain skin homeostasis. J. Clin. Investig. 126, 4497–4515 (2016).

    Article  PubMed  PubMed Central  Google Scholar 

  34. Tang, S. et al. RasGRP3 limits toll-like receptor-triggered inflammatory response in macrophages by activating Rap1 small GTPase. Nat. Commun. 5, 4657 (2014).

    Article  CAS  PubMed  Google Scholar 

  35. Yang, C. W. et al. Regulation of T cell receptor signaling by DENND1B in TH2 cells and allergic disease. Cell 164, 141–155 (2016).

    Article  CAS  PubMed  Google Scholar 

  36. Settembre, C. et al. TFEB links autophagy to lysosomal biogenesis. Science 332, 1429–1433 (2011).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  37. Cong, L. et al. Multiplex genome engineering using CRISPR/Cas systems. Science 339, 819–823 (2013).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  38. Kang, Y. et al. MAPK kinase 3 potentiates Chlamydia HSP60-induced inflammatory response through distinct activation of NF-kappaB. J. Immunol. 191, 386–394 (2013).

    Article  CAS  PubMed  Google Scholar 

  39. Ravindran, R. et al. The amino acid sensor GCN2 controls gut inflammation by inhibiting inflammasome activation. Nature 531, 523–527 (2016).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  40. Shi, B. et al. SNAPIN is critical for lysosomal acidification and autophagosome maturation in macrophages. Autophagy 13, 285–301 (2017).

    Article  CAS  PubMed  Google Scholar 

  41. Liang, C. et al. Beclin1-binding UVRAG targets the class C Vps complex to coordinate autophagosome maturation and endocytic trafficking. Nat. cell Biol. 10, 776–787 (2008).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  42. Yang, J. & Zhang, Y. I-TASSER server: new development for protein structure and function predictions. Nucleic acids Res. 43, W174–W181 (2015).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  43. Xu, Y. et al. Structural basis for signal transduction by the Toll/interleukin-1 receptor domains. Nature 408, 111–115 (2000).

    Article  CAS  PubMed  Google Scholar 

  44. Phillips, J. C. et al. Scalable molecular dynamics with NAMD. J. Comput. Chem. 26, 1781–1802 (2005).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  45. Tanner, D. E., Chan, K. Y., Phillips, J. C. & Schulten, K. Parallel generalized born implicit solvent calculations with NAMD. J. Chem. Theory Comput. 7, 3635–3642 (2011).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  46. Garcia-Saez, I., Lacroix, F. B., Blot, D., Gabel, F. & Skoufias, D. A. Structural characterization of HBXIP: the protein that interacts with the anti-apoptotic protein survivin and the oncogenic viral protein HBx. J. Mol. Biol. 405, 331–340 (2011).

    Article  CAS  PubMed  Google Scholar 

  47. Park, B. S. et al. The structural basis of lipopolysaccharide recognition by the TLR4-MD-2 complex. Nature 458, 1191–1195 (2009).

    Article  CAS  PubMed  Google Scholar 

  48. Settembre, C. et al. A lysosome-to-nucleus signalling mechanism senses and regulates the lysosome via mTOR and TFEB. EMBO J. 31, 1095–1108 (2012).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  49. Munafo, D. B. & Colombo, M. I. A novel assay to study autophagy: regulation of autophagosome vacuole size by amino acid deprivation. J. cell Sci. 114, 3619–3629 (2001).

    Article  CAS  PubMed  Google Scholar 

  50. Konner, A. C. & Bruning, J. C. Toll-like receptors: linking inflammation to metabolism. Trends Endocrinol. Metab.: TEM 22, 16–23 (2011).

    Article  PubMed  CAS  Google Scholar 

  51. O'Neill, L. A. & Pearce, E. J. Immunometabolism governs dendritic cell and macrophage function. J. Exp. Med. 213, 15–23 (2016).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  52. Delgado, M. A., Elmaoued, R. A., Davis, A. S., Kyei, G. & Deretic, V. Toll-like receptors control autophagy. EMBO J. 27, 1110–1121 (2008).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  53. Netea-Maier, R. T., Plantinga, T. S., van de Veerdonk, F. L., Smit, J. W. & Netea, M. G. Modulation of inflammation by autophagy: Consequences for human disease. Autophagy 12, 245–260 (2016).

    Article  CAS  PubMed  Google Scholar 

  54. Luo, L. et al. SCIMP is a transmembrane non-TIR TLR adaptor that promotes proinflammatory cytokine production from macrophages. Nat. Commun. 8, 14133 (2017).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  55. Weichhart, T. et al. The TSC-mTOR signaling pathway regulates the innate inflammatory response. Immunity 29, 565–577 (2008).

    Article  CAS  PubMed  Google Scholar 

  56. Luo, L. et al. Rab8a interacts directly with PI3Kgamma to modulate TLR4-driven PI3K and mTOR signalling. Nat. Commun. 5, 4407 (2014).

    Article  CAS  PubMed  Google Scholar 

  57. Schweitzer, L. D., Comb, W. C., Bar-Peled, L. & Sabatini, D. M. Disruption of the rag-ragulator complex by c17orf59 inhibits mTORC1. Cell Rep. 12, 1445–1455 (2015).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  58. Gwinn, D. M. et al. AMPK phosphorylation of raptor mediates a metabolic checkpoint. Mol. cell 30, 214–226 (2008).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  59. Scheffler, J. M. et al. LAMTOR2 regulates dendritic cell homeostasis through FLT3-dependent mTOR signalling. Nat. Commun. 5, 5138 (2014).

    Article  CAS  PubMed  Google Scholar 

  60. Soma-Nagae, T. et al. The lysosomal signaling anchor p18/LAMTOR1 controls epidermal development by regulating lysosome-mediated catabolic processes. J. cell Sci. 126, 3575–3584 (2013).

    CAS  PubMed  Google Scholar 

  61. Martina, J. A., Chen, Y., Gucek, M. & Puertollano, R. MTORC1 functions as a transcriptional regulator of autophagy by preventing nuclear transport of TFEB. Autophagy 8, 903–914 (2012).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  62. Buck, M. D., Sowell, R. T., Kaech, S. M. & Pearce, E. L. Metabolic Instruction of Immunity. Cell 169, 570–586 (2017).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  63. Zhao, G. N. et al. Tmbim1 is a multivesicular body regulator that protects against non-alcoholic fatty liver disease in mice and monkeys by targeting the lysosomal degradation of Tlr4. Nat. Med. 23, 742–752 (2017).

    Article  CAS  PubMed  Google Scholar 

  64. Uchimura, K. et al. The serine protease prostasin regulates hepatic insulin sensitivity by modulating TLR4 signalling. Nat. Commun. 5, 3428 (2014).

    Article  PubMed  CAS  Google Scholar 

  65. Pal, D. et al. Fetuin-A acts as an endogenous ligand of TLR4 to promote lipid-induced insulin resistance. Nat. Med. 18, 1279–1285 (2012).

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgements

This work was supported by National Natural Scientific Funds (81770014 and 81470210), the National Key Research and Development Program Project (2018YFC1705900), the Natural Science Foundation of Jiangsu Province Fund (BK20180824), financial support for the Jiangsu Key Laboratory for Pharmacology and Safety Evaluation of Chinese Materia Medica, and the Priority Academic Program Development of Jiangsu Higher Education Institutions.

Author information

Authors and Affiliations

Authors

Contributions

L.S. designed the project. W.Z., N.Z., L.H., X.L., Y.H., M.P., H.Z. and Y.K. performed experiments and analyzed data. Y.L., D.X. and Q.W. contributed to the experimental material and provided insightful suggestions. L.S. and W.Z. wrote the manuscript.

Corresponding author

Correspondence to Liyun Shi.

Ethics declarations

Competing interests

The authors declare no competing interests.

Supplementary information

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Zhang, W., Zhuang, N., Liu, X. et al. The metabolic regulator Lamtor5 suppresses inflammatory signaling via regulating mTOR-mediated TLR4 degradation. Cell Mol Immunol 17, 1063–1076 (2020). https://doi.org/10.1038/s41423-019-0281-6

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/s41423-019-0281-6

Keywords

This article is cited by

Search

Quick links