Abstract
Somatic mutations affecting CREBBP and EP300 are a hallmark of diffuse large B-cell lymphoma (DLBCL). These mutations are frequently monoallelic, within the histone acetyltransferase (HAT) domain and usually mutually exclusive, suggesting that they might affect a common pathway, and their residual WT expression is required for cell survival. Using in vitro and in vivo models, we found that inhibition of CARM1 activity (CARM1i) slows DLBCL growth, and that the levels of sensitivity are positively correlated with the CREBBP/EP300 mutation load. Conversely, treatment of DLBCLs that do not have CREBBP/EP300 mutations with CARM1i and a CBP/p300 inhibitor revealed a strong synergistic effect. Our mechanistic data show that CARM1i further reduces the HAT activity of CBP genome wide and downregulates CBP-target genes in DLBCL cells, resulting in a synthetic lethality that leverages the mutational status of CREBBP/EP300 as a biomarker for the use of small-molecule inhibitors of CARM1 in DLBCL and other cancers.
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Data availability
All raw and normalized RNA-Seq and ChIP-seq data that support the findings of this study have been deposited in the GEO SuperSeries under accession number GSE152668.
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Acknowledgements
We thank Manu Sebastian Ph.D., Abhinav Jain Ph.D., Michelle Barton Ph.D., Carlos Perez, and members of the MAS laboratory for technical support and helpful discussions. Core facilities were supported by the NIH Grant P30CA16672 and Cancer Prevention Research Institute of Texas (CPRIT) Grants RP120348, RP170002, and RP170628. This work was supported by CPRIT Recruitment of First-time Tenure-Track Faculty award RR160097 (to HX), NIH grant GM126421 (to MTB), Andrew Sabin Family Fellow Award, American Society of Hematology Junior Faculty Scholar Award, and CPRIT First-time Tenure-Track Faculty award RR150039 (to MAS). MAS and HX are CPRIT scholars in cancer research.
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KJV, MG, HX, YL, MTB, and MAS participated in the study design. KJV, DC, GG, MP-O, and HTV participated in cell culture experiments, in vitro drug treatments, protein, and mRNA quantifications, and analyzed data. KJV performed and analyzed all ChIP-qPCR experiments. KJV and SAS performed mouse breeding, xenografts, and in vivo drug treatments, and analyzed data. OV performed the synergistic drug computational analysis. KJV, KL and YL performed all the RNA-seq and ChIP-seq computational analysis. KJV and MAS wrote the paper and all authors reviewed it. MAS supervised the project.
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Veazey, K.J., Cheng, D., Lin, K. et al. CARM1 inhibition reduces histone acetyltransferase activity causing synthetic lethality in CREBBP/EP300-mutated lymphomas. Leukemia 34, 3269–3285 (2020). https://doi.org/10.1038/s41375-020-0908-8
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DOI: https://doi.org/10.1038/s41375-020-0908-8
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