Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Letter
  • Published:

The mirrored methionine sulfoxide reductases of Neisseria gonorrhoeae pilB

Abstract

Methionine sulfoxide reductases (Msr) protect against oxidative damage that can contribute to cell death. The tandem Msr domains (MsrA and MsrB) of the pilB protein from Neisseria gonorrhoeae each reduce different epimeric forms of methionine sulfoxide. The overall fold of the MsrB domain revealed by the 1.85 Å crystal structure shows no resemblance to the previously determined MsrA structures from other organisms. Despite the lack of homology, the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulfenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulfide exchange steps involving another active site Cys residue and thioredoxin. These observations have broad implications for modular catalysis, antibiotic drug design and continuing longevity studies in mammals.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Figure 1: Domain structure and reductase activity.
Figure 2: Conservation and structure of the MsrB domain.
Figure 3: Mirror-like relationship between the active sites of MsrB and MsrA domains.
Figure 4: Proposed reaction mechanism for MsrB catalysis.

Similar content being viewed by others

Accession codes

Accessions

GenBank/EMBL/DDBJ

Protein Data Bank

References

  1. Khosla, C. & Harbury, P.B. Nature 409, 247–252 (2001).

    Article  CAS  Google Scholar 

  2. Levine, R.L., Moskovitz, J. & Stadtman, E.R. IUBMB Life 50, 301–307 (2000).

    Article  CAS  Google Scholar 

  3. Brot, N. & Weissbach, H. Biopolymers 55, 288–296 (2000).

    Article  CAS  Google Scholar 

  4. Hoshi, T. & Heinemann, S. J. Physiol. 531, 1–11 (2001).

    Article  CAS  Google Scholar 

  5. Sharov, V.S., Ferrington, D.A., Squier, T.C. & Schöneich, C. FEBS Lett. 455, 247–250 (1999).

    Article  CAS  Google Scholar 

  6. Moskovitz, J. et al. Proc. Natl. Acad. Sci. USA 98, 12920–12925 (2001).

    Article  CAS  Google Scholar 

  7. Petropoulos, M.J., Perichon, M. & Friguet, B. Biochem. J. 355, 819–825 (2001).

    Article  CAS  Google Scholar 

  8. Wizemann, T.M. et al. Proc. Natl. Acad. Sci. USA 93, 7985–7990 (1996).

    Article  CAS  Google Scholar 

  9. Hassouni, M.E., Chambost, J.P., Expert, D., Van Gijsegem, F. & Barras, F. Proc. Natl. Acad. Sci. USA 96, 887–892 (1999).

    Article  CAS  Google Scholar 

  10. Laplace, J.M., Hartke, A., Giard, J.C. & Auffray, Y. Appl. Microbiol. Biotechnol. 53, 685–689 (2000).

    Article  CAS  Google Scholar 

  11. Singh, V.K., Moskovitz, J., Wilkinson, B.J. & Jayaswal, R.K. Microbiology 147, 3037–3045 (2001).

    Article  CAS  Google Scholar 

  12. Moskovitz, J. et al. J. Biol. Chem. 275, 14167–14172 (2000).

    Article  CAS  Google Scholar 

  13. Tête-Favier, F. et al. Structure Fold. Des. 8, 1167–1178 (2000).

    Article  Google Scholar 

  14. Boschi-Muller, S. et al. J. Biol. Chem. 275, 35908–35913 (2000).

    Article  CAS  Google Scholar 

  15. Lowther, W.T., Brot, N., Weissbach, H., Honek, J.F. & Matthews, B.W. Proc. Natl. Acad. Sci. USA 97, 6463–6468 (2000).

    Article  CAS  Google Scholar 

  16. Lowther, W.T., Brot, N., Weissbach, H. & Matthews, B.W. Biochemistry 39, 13307–13312 (2000).

    Article  CAS  Google Scholar 

  17. Boschi-Muller, S., Azza, S. & Branlant, G. Protein Sci. 10, 2272–2279 (2001).

    Article  CAS  Google Scholar 

  18. Grimaud, R. et al. J. Biol. Chem. 276, 48915–48920 (2001).

    Article  CAS  Google Scholar 

  19. Huang, W., Escribano, J., Sarfarazi, M. & Coca-Prados, M. Gene 233, 233–240 (1999).

    Article  CAS  Google Scholar 

  20. Apweiler, R. et al. Nucleic Acids Res. 29, 37–40 (2001).

    Article  CAS  Google Scholar 

  21. Hendrickson, W.A. & Ogata, C.M. Methods Enzymol. 276, 494–523 (1997).

    Article  CAS  Google Scholar 

  22. Holmgren, A. Antioxid. Redox Signal. 2, 811–820 (2000).

    Article  CAS  Google Scholar 

  23. Kortemme, T. & Creighton, T.E. J. Mol. Biol. 253, 799–812 (1995).

    Article  CAS  Google Scholar 

  24. Stadtman, T.C. Annu. Rev. Biochem. 65, 83–100 (1996).

    Article  CAS  Google Scholar 

  25. Lescure, A., Gautheret, D., Carbon, P. & Krol, A. J. Biol. Chem. 274, 38147–38154 (1999).

    Article  CAS  Google Scholar 

  26. Emanuelsson, O., Nielsen, H., Brunak, S. & von Heijne, G. J. Mol. Biol. 300, 1005–1016 (2000).

    Article  CAS  Google Scholar 

  27. Ruan, H. et al. Proc. Natl. Acad. Sci. USA 99, 2749–2753 (2002).

    Article  Google Scholar 

  28. Holm, L. & Sander, C. Trends Biochem. Sci. 20, 478–480 (1995).

    Article  CAS  Google Scholar 

  29. Thaw, P. et al. Nature Struct. Biol. 8, 701–704 (2001).

    Article  CAS  Google Scholar 

  30. Yu, H. & Schreiber, S. L. Nature 376, 788–791 (1995).

    Article  CAS  Google Scholar 

  31. Zhu, Z., Dumas, J.J., Lietzke, S.E. & Lambright, D.G. Biochemistry 40, 3027–3036 (2001).

    Article  CAS  Google Scholar 

  32. Nakajima, K. et al. Proc. Natl. Acad. Sci. USA 95, 4876–4881 (1998).

    Article  CAS  Google Scholar 

  33. Mattevi, A. et al. Biochemistry 93, 7496–7501 (1996).

    CAS  Google Scholar 

  34. Pawelek, P.D. et al. EMBO J. 19, 4204–4215 (2000).

    Article  CAS  Google Scholar 

  35. Sussman, J.L. et al. Science 253, 872–879 (1991).

    Article  CAS  Google Scholar 

  36. Bullock, T.L., Breddam, K. & Remington, S.J. J. Mol. Biol. 255, 714–725 (1996).

    Article  CAS  Google Scholar 

  37. Moskovitz, J. et al. Biochem. Biophys. Res. Commun. 290, 62–65 (2002).

    Article  CAS  Google Scholar 

  38. Olry, A. et al. J. Biol. Chem. 99, 2749–2753 (2002).

    Google Scholar 

  39. Gassner, N.C., Baase, W.A., Hausrath, A.C. & Matthews, B.W. J. Mol. Biol. 294, 17–20 (1999).

    Article  CAS  Google Scholar 

  40. Lavine, T.F. J. Biol. Chem. 169, 477–491 (1947).

    CAS  PubMed  Google Scholar 

  41. Ejiri, S.I., Weissbach, H. & Brot, N. J. Bacteriol. 139, 161–164 (1979).

    CAS  PubMed  PubMed Central  Google Scholar 

  42. Otwinowski, Z. & Minor, W. Methods Enzymol. 276, 307–326 (1997).

    Article  CAS  Google Scholar 

  43. Terwilliger, T.C. & Berendzen, J. Acta Crystallogr. D 55, 849–861 (1999).

    Article  CAS  Google Scholar 

  44. de La Fortelle, E. & Bricogne, G. Methods Enzymol. 276, 472–494 (1997).

    Article  CAS  Google Scholar 

  45. Abrahams, J.P. & Leslie, A.G. Acta Crystallogr. D 52, 30–42 (1996).

    Article  CAS  Google Scholar 

  46. Jones, T.A., Zou, J.Y., Cowan, S.W. & Kjeldgaard, M. Acta Crystallogr. A 47, 110–119 (1991).

    Article  Google Scholar 

  47. Brünger, A.T. et al. Acta Crystallogr. D 54, 905–921 (1998).

    Article  Google Scholar 

  48. Corpet, F., Servant, F., Gouzy, J. & Kahn, D. Nucleic Acids Res. 28, 267–269 (2000).

    Article  CAS  Google Scholar 

  49. Barton, G.J. Protein Eng. 6, 37–40 (1993).

    Article  CAS  Google Scholar 

  50. Carson, M. Methods Enzymol. 277, 493–505 (1997).

    Article  CAS  Google Scholar 

Download references

Acknowledgements

This research was supported by the National Institutes of Health and a grant from Hoffmann-La Roche. We are extremely grateful to the staff of the Advanced Light Source (ALS) Beamline 5.0.2 for assistance in data collection and M. Coca-Prados of the Yale University School of Medicine for the human CBS-1 cDNA clone.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Brian W. Matthews.

Ethics declarations

Competing interests

The authors declare no competing financial interests.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Lowther, W., Weissbach, H., Etienne, F. et al. The mirrored methionine sulfoxide reductases of Neisseria gonorrhoeae pilB. Nat Struct Mol Biol 9, 348–352 (2002). https://doi.org/10.1038/nsb783

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/nsb783

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing